Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq6 109 5e-19 seq5 84.2 2e-11 >seq6 Length=4002965 Score = 109 bits (120), Expect = 5e-19 Identities = 149/206 (72%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| |||||| || |||||||| |||| | ||| ||||||| ||||| Sbjct 1337557 ATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCGTCCTCGAGCTG 1337498 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||||||| || | || | |||||||| ||| || | | ||||||||| || || Sbjct 1337497 CTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTT 1337438 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||||| | | || ||||| |||| ||||||| ||||| || || || |||||| Sbjct 1337437 GGACTTGACGTTGTCG--ATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCG 1337380 Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726 || || || || |||||||||||||| Sbjct 1337379 GTAAGGGTCTTGACAAAAATCTGCAT 1337354 >seq5 Length=4198534 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/188 (72%), Gaps = 11/188 (6%) Strand=Plus/Minus Query 48540 TTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTA 48599 ||||||||||||| || | | || || | ||||| ||||||||||| || |||| | Sbjct 2276951 TTTGAATGTTGTAGTCGGAAAGTT--CGACCATCCTCGAGCTGCTTACCAGCGAAAATCA 2276894 Query 48600 AACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTA 48659 ||||||| ||| || | | | |||||||| ||| || |||||| | || | Sbjct 2276893 ---GCTGCTGGTCC-GGGGGAATCCTCCCTTGTCCTGAATCTT-GACTTGATTGTCG--A 2276841 Query 48660 TGGTATCGGTAGACTCCGTCTCGACTGTT-ATGGTTTTACCGGTGAGAGTTTTCACAAAA 48718 |||| |||| |||||| ||||| ||| |||||||| || || ||||| || || ||| Sbjct 2276840 TGGTGTCGGAAGACTCAACCTCGAGAGTTGATGGTTTTTCCAGTCAGAGTCTTGACGAAA 2276781 Query 48719 ATCTGCAT 48726 || ||||| Sbjct 2276780 AT-TGCAT 2276774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421251164062007