Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12]
7 sequences; 20,547,992 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq6 109 5e-19
seq5 84.2 2e-11
>seq6
Length=4002965
Score = 109 bits (120), Expect = 5e-19
Identities = 149/206 (72%), Gaps = 4/206 (2%)
Strand=Plus/Minus
Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582
||| || ||| |||||| || |||||||| |||| | ||| ||||||| |||||
Sbjct 1337557 ATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCGTCCTCGAGCTG 1337498
Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642
||||||| || | || | |||||||| ||| || | | ||||||||| || ||
Sbjct 1337497 CTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTT 1337438
Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700
||||| | | || ||||| |||| ||||||| ||||| || || || ||||||
Sbjct 1337437 GGACTTGACGTTGTCG--ATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCG 1337380
Query 48701 GTGAGAGTTTTCACAAAAATCTGCAT 48726
|| || || || ||||||||||||||
Sbjct 1337379 GTAAGGGTCTTGACAAAAATCTGCAT 1337354
>seq5
Length=4198534
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/188 (72%), Gaps = 11/188 (6%)
Strand=Plus/Minus
Query 48540 TTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTA 48599
||||||||||||| || | | || || | ||||| ||||||||||| || |||| |
Sbjct 2276951 TTTGAATGTTGTAGTCGGAAAGTT--CGACCATCCTCGAGCTGCTTACCAGCGAAAATCA 2276894
Query 48600 AACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTA 48659
||||||| ||| || | | | |||||||| ||| || |||||| | || |
Sbjct 2276893 ---GCTGCTGGTCC-GGGGGAATCCTCCCTTGTCCTGAATCTT-GACTTGATTGTCG--A 2276841
Query 48660 TGGTATCGGTAGACTCCGTCTCGACTGTT-ATGGTTTTACCGGTGAGAGTTTTCACAAAA 48718
|||| |||| |||||| ||||| ||| |||||||| || || ||||| || || |||
Sbjct 2276840 TGGTGTCGGAAGACTCAACCTCGAGAGTTGATGGTTTTTCCAGTCAGAGTCTTGACGAAA 2276781
Query 48719 ATCTGCAT 48726
|| |||||
Sbjct 2276780 AT-TGCAT 2276774
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421251164062007
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |