Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12]
7 sequences; 20,547,992 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq2 143 3e-29
seq6 122 8e-23
seq5 82.4 7e-11
>seq2
Length=3044971
Score = 143 bits (158), Expect = 3e-29
Identities = 342/503 (68%), Gaps = 28/503 (6%)
Strand=Plus/Minus
Query 46098 CAAGAAAA---CCGACTGGGCGATGAAGTGGATCAACAGCAGCACCG-CGACTTTCGCCG 46153
|||||||| |||||||||| | ||||||||| | | | | | | || || | |
Sbjct 506603 CAAGAAAAAGGCCGACTGGGCCCTCAAGTGGATCTCCGAC-GAAGAGTCCACCTTTGGAG 506545
Query 46154 AGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCA 46213
|||| | | |||||||| || |||||| |||| || || ||| ||| ||| |||
Sbjct 506544 AGCGACTCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCA 506485
Query 46214 TCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATA 46272
|||| | |||| || | ||| | ||||||| ||||| || || ||||||||| ||
Sbjct 506484 TCTTCTGGCTCAAGAAGCGAGGTC-TCATGCCTGGCCTCACCTTCTCCAACGAGCTCATC 506426
Query 46273 TCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCAC 46332
|| || |||||||| ||||| || |||||||| || || || | ||||| |
Sbjct 506425 TCCCGAGACGAGGGTCTGCACACTGACTTTGCCTGCCTG--CTTTT---CTCGCAC-CTT 506372
Query 46333 GACAAGCTTGCGCCCGACACCG-----TGCTGAGCATGTTCAAG--GAGGCGGTGGCCAT 46385
|| || | | || || | || |||| | || | ||||| || | |||
Sbjct 506371 GAGAACC----GACCCTCAAAGAAGATTGTTGAGGACGTCATTGTCGAGGCTGTTGGCAT 506316
Query 46386 TGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTC 46445
||| ||||||| |||| | ||| |||||| || ||||| || |||||||| ||
Sbjct 506315 CGAGCAGGAGTTCCTTACTGACGCTCTGCCCTGTGGTCTGCTTGGTATGAACGCCAAGCT 506256
Query 46446 AATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCT-TCACCAGC-CG 46503
|||||| | |||||||||||||| || ||||| ||||| || ||| || | | |
Sbjct 506255 GATGTGCCAGTACATCGAGTTTGTCGCTGACCGTCTGCTAGT--TGCTCTCGGTAACTCC 506198
Query 46504 AAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAA 46563
||| | | || | ||| || || || || ||| | |||||||| |||| |||||
Sbjct 506197 AAGGTGTATAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGCCGGCAAG 506138
Query 46564 ACTAATTTTTTCGAAAAGCGCGT 46586
|| || |||||||| ||||| ||
Sbjct 506137 ACCAACTTTTTCGAGAAGCGAGT 506115
>seq6
Length=4002965
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | ||||| || | ||| | || |||||||| || |||||||| ||
Sbjct 1337580 CCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1337521
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| ||| || |||||| |||||||| || ||| |||| | |||||||||||||| ||
Sbjct 1337520 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 1337461
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
||||| || ||||| ||| || ||||| | || | || |||| ||||| |
Sbjct 1337460 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1337401
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| ||| | || |||||||| || || || || |||||||||||
Sbjct 1337400 TCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCAT 1337354
Score = 102 bits (112), Expect = 8e-17
Identities = 151/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079
||||| || | ||| | || |||||||| || |||||||| ||| | || || |
Sbjct 1219234 CGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCG 1219175
Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139
||||| |||||||| || ||| |||| | |||||||||||||| |||||||| || |||
Sbjct 1219174 TCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATTCCCTCCTTG 1219115
Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199
|| ||| || ||||| | || | || || | |||||| | |||| ||| |
Sbjct 1219114 TCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATA 1219055
Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCA 131233
|| || || || || || || || || || ||||
Sbjct 1219054 GTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1219021
>seq5
Length=4198534
Score = 82.4 bits (90), Expect = 7e-11
Identities = 142/200 (71%), Gaps = 6/200 (3%)
Strand=Plus/Minus
Query 131038 GTCGACTCCTTTTGAATGTTGTAATCGCTCATG-GTGCGCGAGTCCTCT-AGCTGCTTGC 131095
|| |||||||| ||||||||||| ||| | || || ||||| |||||||| |
Sbjct 2277405 GTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAAGTTCGACCATCCTCGGAGCTGCTTAC 2277346
Query 131096 CTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCT 131155
| ||| | || | |||||||||||||| || ||||| || ||||| || || ||
Sbjct 2277345 CAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACT 2277286
Query 131156 TGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACGGT-TTTACCGGTTAGA 131214
| | || || | || |||| ||||| | |||| || | ||| ||| || || |||
Sbjct 2277285 TTAATTG-TCGATGGTGTCGGAAGACTCAACCTCGAAGG--ATGGTCTTTTCCAGTCAGA 2277229
Query 131215 GTTTTTACGAAAATCTGCAT 131234
|| || ||||||||||||||
Sbjct 2277228 GTCTTGACGAAAATCTGCAT 2277209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 472012758698880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |