Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq2 174 3e-38 seq5 165 2e-35 seq6 132 1e-25 seq4 87.8 4e-12 >seq2 Length=3044971 Score = 174 bits (192), Expect = 3e-38 Identities = 565/861 (66%), Gaps = 26/861 (3%) Strand=Plus/Plus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||| || || | |||||| |||||||||| ||||||||||||||||||||| ||| Sbjct 506124 TCGAAAAAGTTGGTCTTGCCGGCCAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 506183 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | || ||| ||||| | || || || || | | ||||| || |||||||| | Sbjct 506184 GAGTTATACACCTTGGAGTTACCGAGAGCAACTAGCAGACGGTCAGCGACAAACTCGATG 506243 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | |||||| | | |||||| |||| || || ||| || | || ||| | | Sbjct 506244 TACTGGCACATCAGCTTGGCGTTCATACCAAGCAGACCACAGGGCAGAGCGTCAGTAAGG 506303 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAAT--TGCCTTCACCTGT-GCCAGAGAC 251799 || |||| ||| || |||| | |||| ||||| | | ||| | | | || Sbjct 506304 AACTCCTGCTCGATGCCAACAG---CCTCGACAATGACGTCCTCAACAATCTTCTTTGAG 506360 Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCG 251859 | |||||| || | ||| | || || | |||| | ||||||||||||||| Sbjct 506361 GGTCGGTTCTCAAGGTGCGAGAAAAGCAGGCAGGCAAAGTCAGTGTGCAGACCCTCGTCT 506420 Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919 || ||||| ||||||||| | ||||||||||| | || || ||| |||||||| Sbjct 506421 CGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGACCTCGCTTCTTGAGCCAG 506480 Query 251920 AAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGG 251979 ||||| | | || || || ||||| | | |||||||| | | |||| || Sbjct 506481 AAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACGGCGGCAAAGGCAATGAGT 506540 Query 251980 CGCTCAGCAAA---CGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTTT 252036 ||||| |||| |||| || | || | |||| | ||||| | ||||| ||| Sbjct 506541 CGCTCTCCAAAGGTGGACTCTTCGTCGGAGATCCACTTGAGGGCCCAGTCGGCCTT-TTT 506599 Query 252037 CCAACCGC-GGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTC 252095 | || |||||| || ||||| || | || || || | ||||| ||||| Sbjct 506600 CTTGATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTAGGTTCGCTCTTTGGGGTCCTT 506659 Query 252096 GATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTG 252155 |||| | || | ||| || ||||| |||| || |||||| || | | ||||| Sbjct 506660 GATGTATGTGTCGATCAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTG 506719 Query 252156 GTAAGCATAGAA----TAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTG 252211 | | | ||||| | | | | ||| ||| | | || || ||| || | Sbjct 506720 GAAGCCGTAGAAGCACTTGGC-CTCGG--GGGCCTG-CACCTCGCCGGAGAATCGCTCAA 506775 Query 252212 CAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGA 252271 | | |||||| | || || || ||| | | |||||||| | |||| | ||||| Sbjct 506776 CCAGGTTCTCGTTAACGATACCGTCGGAGGCAGCAAAGAATGCGAGAACGTGGGAGATGA 506835 Query 252272 AGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTC--AGAGG 252329 || |||||||||| |||||| ||| |||||| | ||||||| ||| ||| Sbjct 506836 AGAACCGCTCATCGTTGTTGAGTCTGTTCTCCCAGTCACCCATGTCCT--TTCCAAGATC 506893 Query 252330 AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCAG 252388 || || || | |||||||| | || | | |||||||||||||| ||| | | || Sbjct 506894 AATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGC-CAGATTTCGT 506952 Query 252389 GGTACTTGATTGGGAA-AGCA 252408 |||||| ||| ||||| |||| Sbjct 506953 GGTACTGGATGGGGAAGAGCA 506973 >seq5 Length=4198534 Score = 165 bits (182), Expect = 2e-35 Identities = 418/624 (67%), Gaps = 29/624 (5%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || |||||||||||| ||||||| ||||| || || || |||| ||||||||||| ||| Sbjct 1626861 GGCGAGGATCTGTGTAACTGTGAGTTCTCTCTGGCTTACGGTGCTAAGATTCTGCTGAAC 1626920 Query 279405 TCTACCCGCCT-CAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGC 279463 |||| || | || ||||||| ||| || || |||||| ||||| || || || Sbjct 1626921 CGAACCCAGCTGCGAC-TCAAGCGAGGCCGACGATACGGTCTCTGTGGTCCTAACGGTGC 1626979 Query 279464 GGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGC 279523 |||||| ||| || ||||| |||||||| ||||||||| | || || ||||| || | Sbjct 1626980 TGGTAAGTCCACCCTGATGCGAGCCATTGCCAACGGTCAGGTCGAGGG-TTTCCCCACCC 1627038 Query 279524 ATCTGAGGTAAGGA-CAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCA 279582 | | || || | || | || || |||||||| ||| | | | | || | || Sbjct 1627039 AGGAGGAGTGTCGAACTGTCTTCGTCGACCACGACATTGACGGTACCCACGCCGACACCA 1627098 Query 279583 CTGTGTTCGACTTCCTAACGTCTGACAATCAG--GTTATGGAAATCAGCTCTCCTGAGGA 279640 || |||||| ||||| || | | | | | | ||| | || ||||| Sbjct 1627099 ACGTTGTCGACT-----ACGTCCGAAAGACCGCCGGTGAGTCCATCGGTACTGAGGAGGA 1627153 Query 279641 AATCATCCAGAAACTGGAGGCCAATGGTTT---TGATGAAAGAATGCGTAATCTGCCAGT 279697 || || | ||| | | || ||| || | | || | |||| | Sbjct 1627154 GGTCCGAAAGCAGCTGCTTGACTTCCTGTTCACTGACGAGATGACCCGAA---TGCCCAT 1627210 Query 279698 AGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCT---CACTCGCGCCATTCTACT 279754 |||||||| ||||| ||||||||||||||||| || |||| || | | | | Sbjct 1627211 CACCTCTCTGTCTGGTGGATGGAAGATGAAGCTGGCTCTTGCCACTGCCGTCCTCCGAAA 1627270 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814 | |||||| |||| |||||||||||||| |||||||| |||| ||| |||||| || Sbjct 1627271 G---GCCGATATCCTGCTGCTTGATGAGCCTACCAACCATCTGGATACCGTCAACGTTGC 1627327 Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGA 279874 ||||| || |||||| | || ||| | | | | ||| |||| ||||| ||||| Sbjct 1627328 TTGGCTGGTCAACTACCTTAACA-CCTGTGG--TATCACCTCCATCATCGTCTCCCACGA 1627384 Query 279875 CTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCT 279934 |||||| ||||| ||| ||| || |||||||||||| |||| | | ||||| Sbjct 1627385 CTCTGGTTTCCTCGATAACGTCTGTGAGTACATCATTCACTACGAGCGA---TTCAAGCT 1627441 Query 279935 CTCCAAGCACATCGGCAACCTGTC 279958 | ||| ||| || |||||||| Sbjct 1627442 CCGAAAGTACAAGGGTAACCTGTC 1627465 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 280677 CTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAG 280736 || ||||| || |||||| || |||||||||| || || ||||| ||||| || ||| Sbjct 1628232 CTTGGTCTCGAGCCCGAGCTTGTCTCTCACTCTCGAATCCGAGGTCTGTCTGGTGGTCAG 1628291 Query 280737 AAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGAC 280796 |||||||| ||||| | | || | ||||| | || || | ||||| || || Sbjct 1628292 AAGGTCAAGCTTGTGCTTGCCGCCTGTACCTGGCAGCGACCCCATCTTATCGTCCTTGAT 1628351 Query 280797 GAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838 |||||||||||||||||||| || || || || |||||| Sbjct 1628352 GAGCCTACCAACTATCTGGATCGAGACTCTCTTGGAGCTCTG 1628393 >seq6 Length=4002965 Score = 132 bits (146), Expect = 1e-25 Identities = 495/764 (65%), Gaps = 23/764 (3%) Strand=Plus/Minus Query 293020 TAATACACAAGTGTTTTAAGACCCTTCTTCCATGCGTAGAACAGCATAGATGTCATAGAC 293079 || |||| | ||| || |||||||||||||| ||||||| |||| || || | | Sbjct 3935259 TAGTACATACCTGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATGGAGGTGAG---C 3935203 Query 293080 TTCAGTGTGGGAGTGGCCAGGAA---AAGGTTCATGCTCTGCGTCTGATCGACAAAGGCA 293136 || ||| || | || || || ||| | | ||| | ||| || | |||| Sbjct 3935202 TTGCCCATGGTAGGGTCCTTGATGTGAATGTTGAGGGACTGAGACTGGTCAATGAAGGGG 3935143 Query 293137 CCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGAGATCTCCCACGATGTCTTGTAC 293196 || ||||| || | ||||| | | |||| ||| ||||||||| ||||||||| Sbjct 3935142 GATCGGTCAGCGGCCATCTCAATGATTCGCTTCTGAGAAATCTCCCACACGGTCTTGTAC 3935083 Query 293197 ACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTGGATAGACCCTCCGTTG---GCA 293253 | |||||| || | ||||| | ||||| | || ||||||| ||| Sbjct 3935082 AGGTCCTTGATTTCCTGGGGAATGTTGGGGATGTTCTGCACGGA---TCCGTTGTCAGCA 3935026 Query 293254 ATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGAGCAATGAGCTCGCGGACAAG 293312 | ||| |||||||||| |||||| ||| || || || ||| || || || || Sbjct 3935025 ACAATTCGGTTCTTCATGGTCTCGTTCCACAGGCCAACCT-CAACCAGGTCCTTGAGCAG 3934967 Query 293313 GTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTTCGAAGT 293372 | | |||||||| |||| |||||||| ||| || || ||||||||| ||||| Sbjct 3934966 CCAGGGGTTGACAATCTGGAATTCACCAGCAAGAACTCGTCGAGAGTAAATGTTGGAAGT 3934907 Query 293373 GATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAGTAGATGCGGTAGGCATAAG 293432 | ||| ||| |||| | || |||||| | ||| || || || ||||| | Sbjct 3934906 GTAGGGCTCGAAGCACTCATTGAAACCAAGAATCTGGGAAGTGGAGGCAGTGGGCATGGG 3934847 Query 293433 AGCAGTCGTCAGAGAGTTCCTCACACC---CTTCTTGACACGCGATTCGAGACCCGCCCA 293489 ||| | ||| ||||| | || ||| |||| ||| | | |||| | |||| Sbjct 3934846 AGCGACCAACAGCGAGTTTCGCATACCAGTCTTCATGATCTTGGCCTTGAGATCGTCCCA 3934787 Query 293490 GTCC-AGAGCAGTCTGA-GGTGTAACACCCCAGAGATGATACTGCATGATACCCTTGCTG 293547 ||| | ||| || || || || || |||||||| |||| | | ||||||| | Sbjct 3934786 CTCCCACAGC--TCGGAAGGAGTCACGTTCCAGAGATCGAACTGGAGGTCACCCTTGGAG 3934729 Query 293548 GCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCATCAGAGAGCTCGCAAGATGCC 293607 ||||| || |||| ||||| | || || | |||| || | |||| |||| || Sbjct 3934728 GCAGGGGAGCCCTGGAAGGTCTCGTAGGCACCGTCCTCAAGAGCCATCTCGTAAGAGGCT 3934669 Query 293608 TCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGTTGAGCTTGCGAGCCTGCTCA 293667 || ||||| | ||| ||| ||||||||||| ||||||||| |||| ||| Sbjct 3934668 TCGACAGCTCCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCCTCG 3934609 Query 293668 GAGTCAAACGGCA-TCTTCAGCTGGAAGAACACATCCTGCAGACCCTGTACACCTACACC 293726 || ||||| || | || | || | ||| || ||||||||| ||||| | | | Sbjct 3934608 GACTCAAATGGGAGTCGT-AGAGCCATGAAGGTGTCGGCCAGACCCTGGACACCCAGAGC 3934550 Query 293727 AACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGAACCG 293770 || ||| || | ||| |||| | ||| |||||||| |||| Sbjct 3934549 AATGGGTCGGTGTCGCATGTTAGACTTCTTGGCCTCGGGGACCG 3934506 >seq4 Length=3629463 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896 ||||| ||||| || || ||||||||||| || || |||| | |||||| || | Sbjct 3120213 TGCACGCTCATTCTCACTGAGGGAGACTCCGCCATGACCATGGCGAACGCTGGACTGTCT 3120272 Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956 ||| | ||||| ||| | ||||| ||| || || ||||||||| ||||||||||||| Sbjct 3120273 GTGATTGGTCGAGAACGATATGGCGCCTTTCCTCTGCGTGGTAAGATGCTCAACGTGCGA 3120332 Query 217957 GATGCCTC 217964 || || || Sbjct 3120333 GAGGCGTC 3120340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836707815887