Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5 86.0 1e-11 seq2 84.2 5e-11 >seq5 Length=4198534 Score = 86.0 bits (94), Expect = 1e-11 Identities = 159/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTC-GGC 288305 ||||| ||||||| || | |||||| | ||| |||| | | || || ||||| || Sbjct 2276772 CCACCTCGGAGTCGGAGAAAGAGATGGAGAGTGGACTCTTCT-GAATGTTTTAGTCCGGA 2276714 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || | || || || | || || || ||||| ||||| ||||| || | || Sbjct 2276713 AAGAGTTGGACCATCCTCGAGCTGCTTACCAGCGAAAATCAGTCGCTGCTG-GTCCGGGG 2276655 Query 288366 GATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTAC 288425 || |||| ||| ||||| || || ||| || || || | ||| || || || Sbjct 2276654 GAATCCTCCTTG-TCCTGAATCTTGACTTGACAATTGTCGATGGTGTCGGAAGACTCAAC 2276596 Query 288426 TTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| ||||| ||||| || ||||||||||||||||| |||||||| Sbjct 2276595 CTCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 2276548 >seq2 Length=3044971 Score = 84.2 bits (92), Expect = 5e-11 Identities = 131/184 (71%), Gaps = 10/184 (5%) Strand=Plus/Minus Query 268462 TTTCCCATTCAATATCATGATCTGTGGAACATGTACAAGAAGGCAGTGGCAACCTTTTGG 268521 || ||||| || || || || | ||| | |||||||||||||| | ||| | || ||| Sbjct 506968 TTCCCCATCCAGTACCACGAAATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGG 506909 Query 268522 ACCACCGAGGAAGTTCCTCTT--AACGCAGACGTTGCAGACTGGCGTGAGAA---ACTGA 268576 || | ||||| || |||| || | ||| | | |||||| ||||| ||| | Sbjct 506908 ACAGCTGAGGAGATTGATCTTGGAAAG--GACATGGGTGACTGG---GAGAACAGACTCA 506854 Query 268577 ACAACGATGAACGACACTTCATCAAACATATTCTGGGGTTCTTTGCAGGCTCCGACGGTA 268636 |||||||||| || ||||||| || |||| | |||||||| | ||||||||||| Sbjct 506853 ACAACGATGAGCGGTTCTTCATCTCCCACGTTCTCGCATTCTTTGCTGCCTCCGACGGTA 506794 Query 268637 TCGT 268640 |||| Sbjct 506793 TCGT 506790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654294199746