Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12]
7 sequences; 20,547,992 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq6 125 8e-24
seq5 86.0 7e-12
>seq6
Length=4002965
Score = 125 bits (138), Expect = 8e-24
Identities = 166/228 (73%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
|||||||| | |||| || | ||| | ||| |||||| || || ||||| || |
Sbjct 1219247 ACCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 1219188
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
||||| || |||| || ||||||||||| ||||| || |||||||||||||| | ||
Sbjct 1219187 AAGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 1219128
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159
| | |||||||||| ||| || |||| ||| | | | ||||| || ||||
Sbjct 1219127 GATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCAATGGTGTCAGAGGACTCCA 1219069
Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 42207
| |||| ||||| || ||||| || || ||||| |||||||||||||
Sbjct 1219068 CCTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1219021
Score = 116 bits (128), Expect = 4e-21
Identities = 166/231 (72%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040
||| |||| | |||| || | ||| | ||| |||||| || || ||||| ||||
Sbjct 1337581 ACCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1337522
Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100
|| || || |||| || ||||||||||| ||||| || |||||||||||||| | ||
Sbjct 1337521 AAGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 1337462
Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159
| | |||||||||| ||| || |||| ||| | | | |||||| || ||||
Sbjct 1337461 AATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCA 1337403
Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 42210
| |||| ||||| || || || || || ||||| ||||| || |||||||
Sbjct 1337402 CCTCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1337352
>seq5
Length=4198534
Score = 86.0 bits (94), Expect = 7e-12
Identities = 142/197 (72%), Gaps = 10/197 (5%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGA-GTCCGCTCGTCATCT-AGCTGCTTACCAGCG 42074
|||||| ||||| ||||| || | ||| || || | || || |||||||||||||||
Sbjct 2277400 CTCCTTCTGAATGTTGTAGTCGGAAAGAAGTTCGACCATCCTCGGAGCTGCTTACCAGCG 2277341
Query 42075 AATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG--TTTGA 42132
|| || |||||||||||||| | || | | |||||||||| ||| | || | ||| |
Sbjct 2277340 AAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC-TGAATCTTGGACTTTAA 2277282
Query 42133 GCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT-TTTGCCCGTTAGCGTC 42191
|||| | |||||| || || || |||| |||||| ||| || || || |||
Sbjct 2277281 TTGTCG--ATGGTGTCGGAAGACTCAACCTCGA--AGGATGGTCTTTTCCAGTCAGAGTC 2277226
Query 42192 TTTACAAAGATTTGCAT 42208
|| || || || |||||
Sbjct 2277225 TTGACGAAAATCTGCAT 2277209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543212752468880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |