Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq6 125 8e-24 seq5 86.0 7e-12 >seq6 Length=4002965 Score = 125 bits (138), Expect = 8e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 |||||||| | |||| || | ||| | ||| |||||| || || ||||| || | Sbjct 1219247 ACCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 1219188 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 ||||| || |||| || ||||||||||| ||||| || |||||||||||||| | || Sbjct 1219187 AAGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 1219128 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | | |||||||||| ||| || |||| ||| | | | ||||| || |||| Sbjct 1219127 GATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCAATGGTGTCAGAGGACTCCA 1219069 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 42207 | |||| ||||| || ||||| || || ||||| ||||||||||||| Sbjct 1219068 CCTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1219021 Score = 116 bits (128), Expect = 4e-21 Identities = 166/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 41981 ACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 42040 ||| |||| | |||| || | ||| | ||| |||||| || || ||||| |||| Sbjct 1337581 ACCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1337522 Query 42041 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGG 42100 || || || |||| || ||||||||||| ||||| || |||||||||||||| | || Sbjct 1337521 AAGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 1337462 Query 42101 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCA 42159 | | |||||||||| ||| || |||| ||| | | | |||||| || |||| Sbjct 1337461 AATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCA 1337403 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 42210 | |||| ||||| || || || || || ||||| ||||| || ||||||| Sbjct 1337402 CCTCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1337352 >seq5 Length=4198534 Score = 86.0 bits (94), Expect = 7e-12 Identities = 142/197 (72%), Gaps = 10/197 (5%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGA-GTCCGCTCGTCATCT-AGCTGCTTACCAGCG 42074 |||||| ||||| ||||| || | ||| || || | || || ||||||||||||||| Sbjct 2277400 CTCCTTCTGAATGTTGTAGTCGGAAAGAAGTTCGACCATCCTCGGAGCTGCTTACCAGCG 2277341 Query 42075 AATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG--TTTGA 42132 || || |||||||||||||| | || | | |||||||||| ||| | || | ||| | Sbjct 2277340 AAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC-TGAATCTTGGACTTTAA 2277282 Query 42133 GCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGT-TTTGCCCGTTAGCGTC 42191 |||| | |||||| || || || |||| |||||| ||| || || || ||| Sbjct 2277281 TTGTCG--ATGGTGTCGGAAGACTCAACCTCGA--AGGATGGTCTTTTCCAGTCAGAGTC 2277226 Query 42192 TTTACAAAGATTTGCAT 42208 || || || || ||||| Sbjct 2277225 TTGACGAAAATCTGCAT 2277209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543212752468880