Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq2 143 3e-29 seq6 113 4e-20 seq5 104 2e-17 >seq2 Length=3044971 Score = 143 bits (158), Expect = 3e-29 Identities = 331/493 (67%), Gaps = 13/493 (3%) Strand=Plus/Minus Query 52341 AAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGC 52400 |||||||| | ||||| | ||||||||| ||| |||| | | ||||| Sbjct 506599 AAAAAGGCCGACTGGGCCCTCAAGTGGATCTCCGACGAAGAGTCCACCTTTGGAGAGCGA 506540 Query 52401 ATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTT 52460 | | ||||| ||| ||||||||| | || || |||||| || ||| ||||||| Sbjct 506539 CTCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTC 506480 Query 52461 TACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGC 52520 | | || | | ||| | ||||| ||||| || ||| ||||||| | || || || Sbjct 506479 TGGCTCAAGAAGCGAGGTCTCATGCCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGA 506420 Query 52521 GACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGA-CCGAA-- 52577 ||||| || |||||||| |||||||| ||||| | | | | | || |||| Sbjct 506419 GACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTTTTCTCGCACCTTGAGAACCGACCC 506360 Query 52578 --AAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGG 52635 ||| |||| | | || | | ||| || ||||| || | ||||| ||| Sbjct 506359 TCAAAGAAGATT-GTTGAGGA-CGT---CATTGTC---GAGGCTGTTGGCATCGAGCAGG 506308 Query 52636 AGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCG 52695 |||| |||| | ||| ||||| | ||||| || |||||||| || |||||| Sbjct 506307 AGTTCCTTACTGACGCTCTGCCCTGTGGTCTGCTTGGTATGAACGCCAAGCTGATGTGCC 506248 Query 52696 AGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCA 52755 |||||||||||||||| || || |||||| | || ||||| | | ||| | | Sbjct 506247 AGTACATCGAGTTTGTCGCTGACCGTCTGCTAGTTGCTCTCGGTAACTCCAAGGTGTATA 506188 Query 52756 ACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTT 52815 || | ||| || || || || ||| | ||||| || || | |||||||||||||||| Sbjct 506187 ACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGCCGGCAAGACCAACTTTT 506128 Query 52816 TCGAGAAGCGAGT 52828 ||||||||||||| Sbjct 506127 TCGAGAAGCGAGT 506115 >seq6 Length=4002965 Score = 113 bits (124), Expect = 4e-20 Identities = 166/234 (71%), Gaps = 1/234 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | |||| ||| | ||| | | |||||||| || |||||||||||| Sbjct 1219246 CCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 1219187 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||||||| || ||||||| |||| || ||||| |||||||| || Sbjct 1219186 AGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 1219127 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||| | ||||||||| Sbjct 1219126 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACC 1219067 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCA-TGGCTTA 138620 |||| || | || || ||||| || || || ||||| || |||| ||| ||| Sbjct 1219066 TCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCACTGGGTTA 1219013 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || ||||| | |||| || | ||| | | |||||||| || ||||||||||| Sbjct 1337580 CCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1337521 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | || || ||||||||| || ||||||| |||| || ||||| |||||||| || Sbjct 1337520 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 1337461 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || || || ||||| ||| || || | | || | |||||||| ||||||||| Sbjct 1337460 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1337401 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | || ||||| || || || || |||||||||||||| Sbjct 1337400 TCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCAT 1337354 >seq5 Length=4198534 Score = 104 bits (114), Expect = 2e-17 Identities = 146/197 (74%), Gaps = 6/197 (3%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATA-GTACGCGAGTCCTCG-AGTTGTTTACCGG 138478 |||||||| ||||||||||||||| | | || || |||||| || || ||||| | Sbjct 2277402 GACTCCTTCTGAATGTTGTAGTCGGAAAGAAGTTCGACCATCCTCGGAGCTGCTTACCAG 2277343 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-TTT 138537 | || || ||||| |||||||| || || || || ||||| ||| | || | ||| Sbjct 2277342 CGAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC-TGAATCTTGGACTTT 2277284 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||||| | | |||||||| ||||| ||||||| | | |||| ||||||||||| Sbjct 2277283 AATTGT-CGATGGTGTCGGAAGACTCAACCTCGAAGGATGGTCTTTT-CCAGTCAGAGTC 2277226 Query 138598 TTTACAAAAATCTGCAT 138614 || || ||||||||||| Sbjct 2277225 TTGACGAAAATCTGCAT 2277209 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/197 (72%), Gaps = 8/197 (4%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479 ||||| || |||||||| ||||| | | ||| | |||||||| || ||||| | Sbjct 2276739 GACTC-TTCTGAATGTTTTAGTCCGGAAAGAGTTGGACCATCCTCGAGCTGCTTACCAGC 2276681 Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538 | || || ||||| |||||||| || || | || ||||| ||| | || || | Sbjct 2276680 GAAAATCAGTCGCTGCTGGTCCGGGGGAATCC--TCCTTGTCC-TGAATCTTGACTTGAC 2276624 Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 ||||| | | |||||||| ||||| ||||||| || | || || ||||||||||| Sbjct 2276623 AATTGT-CGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTTCCAGTCAGAGTC 2276565 Query 138598 TTTACAAAAATCTGCAT 138614 || || ||||||||||| Sbjct 2276564 TTGACGAAAATCTGCAT 2276548 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/188 (73%), Gaps = 11/188 (6%) Strand=Plus/Minus Query 138428 TTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTA 138487 ||||||||||||||||| | ||| || |||||||| || ||||| | | || | Sbjct 2276951 TTTGAATGTTGTAGTCGG--AAAGTTCGACCATCCTCGAGCTGCTTACCAGCGAAAATCA 2276894 Query 138488 GACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCA 138547 | ||| |||||||| || || ||| | ||||| ||| | || | || ||||| | | Sbjct 2276893 G---CTGCTGGTCCGGGGGAAT-CCTCCCTTGTCC-TGAATCTT-GACTTGATTGT-CGA 2276841 Query 138548 CGGTGTCGGTCGACTCCACCTCGACCGTC-AGCGTTTTACCAGTCAGAGTTTTTACAAAA 138606 |||||||| ||||| ||||||| || | ||||| ||||||||||| || || ||| Sbjct 2276840 TGGTGTCGGAAGACTCAACCTCGAGAGTTGATGGTTTTTCCAGTCAGAGTCTTGACGAAA 2276781 Query 138607 ATCTGCAT 138614 || ||||| Sbjct 2276780 AT-TGCAT 2276774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262356577040