Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12]
7 sequences; 20,547,992 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq2 143 3e-29
seq6 113 4e-20
seq5 104 2e-17
>seq2
Length=3044971
Score = 143 bits (158), Expect = 3e-29
Identities = 331/493 (67%), Gaps = 13/493 (3%)
Strand=Plus/Minus
Query 52341 AAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGC 52400
|||||||| | ||||| | ||||||||| ||| |||| | | |||||
Sbjct 506599 AAAAAGGCCGACTGGGCCCTCAAGTGGATCTCCGACGAAGAGTCCACCTTTGGAGAGCGA 506540
Query 52401 ATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTT 52460
| | ||||| ||| ||||||||| | || || |||||| || ||| |||||||
Sbjct 506539 CTCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTC 506480
Query 52461 TACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGC 52520
| | || | | ||| | ||||| ||||| || ||| ||||||| | || || ||
Sbjct 506479 TGGCTCAAGAAGCGAGGTCTCATGCCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGA 506420
Query 52521 GACGAAGGACTGCACACGGACTTTGCGTGCCTCTACTACAAGACGCGCGTGA-CCGAA-- 52577
||||| || |||||||| |||||||| ||||| | | | | | || ||||
Sbjct 506419 GACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTTTTCTCGCACCTTGAGAACCGACCC 506360
Query 52578 --AAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTATCGAAAAGG 52635
||| |||| | | || | | ||| || ||||| || | ||||| |||
Sbjct 506359 TCAAAGAAGATT-GTTGAGGA-CGT---CATTGTC---GAGGCTGTTGGCATCGAGCAGG 506308
Query 52636 AGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGTCCATGTGCG 52695
|||| |||| | ||| ||||| | ||||| || |||||||| || ||||||
Sbjct 506307 AGTTCCTTACTGACGCTCTGCCCTGTGGTCTGCTTGGTATGAACGCCAAGCTGATGTGCC 506248
Query 52696 AGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCAAAGTACTTCA 52755
|||||||||||||||| || || |||||| | || ||||| | | ||| | |
Sbjct 506247 AGTACATCGAGTTTGTCGCTGACCGTCTGCTAGTTGCTCTCGGTAACTCCAAGGTGTATA 506188
Query 52756 ACGCTCGCAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCAAGACCAACTTTT 52815
|| | ||| || || || || ||| | ||||| || || | ||||||||||||||||
Sbjct 506187 ACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGCCGGCAAGACCAACTTTT 506128
Query 52816 TCGAGAAGCGAGT 52828
|||||||||||||
Sbjct 506127 TCGAGAAGCGAGT 506115
>seq6
Length=4002965
Score = 113 bits (124), Expect = 4e-20
Identities = 166/234 (71%), Gaps = 1/234 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| ||||| | |||| ||| | ||| | | |||||||| || ||||||||||||
Sbjct 1219246 CCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 1219187
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||||||||| || ||||||| |||| || ||||| |||||||| ||
Sbjct 1219186 AGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 1219127
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| || || ||||| ||| || || | | || | |||||| | |||||||||
Sbjct 1219126 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACC 1219067
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCA-TGGCTTA 138620
|||| || | || || ||||| || || || ||||| || |||| ||| |||
Sbjct 1219066 TCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCACTGGGTTA 1219013
Score = 113 bits (124), Expect = 4e-20
Identities = 161/227 (71%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| ||||| | |||| || | ||| | | |||||||| || |||||||||||
Sbjct 1337580 CCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1337521
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| || || ||||||||| || ||||||| |||| || ||||| |||||||| ||
Sbjct 1337520 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 1337461
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567
|| || || ||||| ||| || || | | || | |||||||| |||||||||
Sbjct 1337460 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1337401
Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||| || | || ||||| || || || || ||||||||||||||
Sbjct 1337400 TCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCAT 1337354
>seq5
Length=4198534
Score = 104 bits (114), Expect = 2e-17
Identities = 146/197 (74%), Gaps = 6/197 (3%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATA-GTACGCGAGTCCTCG-AGTTGTTTACCGG 138478
|||||||| ||||||||||||||| | | || || |||||| || || ||||| |
Sbjct 2277402 GACTCCTTCTGAATGTTGTAGTCGGAAAGAAGTTCGACCATCCTCGGAGCTGCTTACCAG 2277343
Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGT-TTT 138537
| || || ||||| |||||||| || || || || ||||| ||| | || | |||
Sbjct 2277342 CGAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC-TGAATCTTGGACTTT 2277284
Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597
|||||| | | |||||||| ||||| ||||||| | | |||| |||||||||||
Sbjct 2277283 AATTGT-CGATGGTGTCGGAAGACTCAACCTCGAAGGATGGTCTTTT-CCAGTCAGAGTC 2277226
Query 138598 TTTACAAAAATCTGCAT 138614
|| || |||||||||||
Sbjct 2277225 TTGACGAAAATCTGCAT 2277209
Score = 84.2 bits (92), Expect = 2e-11
Identities = 141/197 (72%), Gaps = 8/197 (4%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTC-GCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGA 138479
||||| || |||||||| ||||| | | ||| | |||||||| || ||||| |
Sbjct 2276739 GACTC-TTCTGAATGTTTTAGTCCGGAAAGAGTTGGACCATCCTCGAGCTGCTTACCAGC 2276681
Query 138480 ATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA- 138538
| || || ||||| |||||||| || || | || ||||| ||| | || || |
Sbjct 2276680 GAAAATCAGTCGCTGCTGGTCCGGGGGAATCC--TCCTTGTCC-TGAATCTTGACTTGAC 2276624
Query 138539 -ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597
||||| | | |||||||| ||||| ||||||| || | || || |||||||||||
Sbjct 2276623 AATTGT-CGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTTCCAGTCAGAGTC 2276565
Query 138598 TTTACAAAAATCTGCAT 138614
|| || |||||||||||
Sbjct 2276564 TTGACGAAAATCTGCAT 2276548
Score = 84.2 bits (92), Expect = 2e-11
Identities = 137/188 (73%), Gaps = 11/188 (6%)
Strand=Plus/Minus
Query 138428 TTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTA 138487
||||||||||||||||| | ||| || |||||||| || ||||| | | || |
Sbjct 2276951 TTTGAATGTTGTAGTCGG--AAAGTTCGACCATCCTCGAGCTGCTTACCAGCGAAAATCA 2276894
Query 138488 GACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCA 138547
| ||| |||||||| || || ||| | ||||| ||| | || | || ||||| | |
Sbjct 2276893 G---CTGCTGGTCCGGGGGAAT-CCTCCCTTGTCC-TGAATCTT-GACTTGATTGT-CGA 2276841
Query 138548 CGGTGTCGGTCGACTCCACCTCGACCGTC-AGCGTTTTACCAGTCAGAGTTTTTACAAAA 138606
|||||||| ||||| ||||||| || | ||||| ||||||||||| || || |||
Sbjct 2276840 TGGTGTCGGAAGACTCAACCTCGAGAGTTGATGGTTTTTCCAGTCAGAGTCTTGACGAAA 2276781
Query 138607 ATCTGCAT 138614
|| |||||
Sbjct 2276780 AT-TGCAT 2276774
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496262356577040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |