Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12]
7 sequences; 20,547,992 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq2 158 1e-33
seq6 111 1e-19
seq5 96.9 3e-15
>seq2
Length=3044971
Score = 158 bits (174), Expect = 1e-33
Identities = 357/531 (67%), Gaps = 17/531 (3%)
Strand=Plus/Minus
Query 47046 CTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAG 47105
|| || |||| |||||| ||| |||||| | | ||||||||| |||||| | |||
Sbjct 506635 CTGTTCAACGCCATCGAGACCATCCCCTGCATCAAGAAAAAGGCCGACTGGGCCCTCAAG 506576
Query 47106 TACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAG 47165
| || ||||| | ||| | | || || | || || || ||| |||||||
Sbjct 506575 TGGATCTCCGACGAAGAGTCCACCTTTGGAGAGCGACTCATTGCCTTTGCCGCCGTCGAG 506516
Query 47166 GGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATG 47225
||| |||||||||| ||| || || | || || | | || | ||| | |||
Sbjct 506515 GGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATG 506456
Query 47226 CCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTT 47285
|| |||||||| || ||||||||| ||||| ||||||| || |||||||| |||||
Sbjct 506455 CCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGAGACGAGGGTCTGCACACTGACTTT 506396
Query 47286 GCCTGTCTC---TACTACAACACT-AGAGTCGATCA--AAAGTTGGACGTGCCCACCGTC 47339
||||| || | || || | ||| ||| | |||| | || |
Sbjct 506395 GCCTGCCTGCTTTTCTCGCACCTTGAGAACCGACCCTCAAAGAAGATTGT--------TG 506344
Query 47340 AGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCC 47399
|| ||| | ||| ||| || || | ||| ||| |||||| | | || |||||||||
Sbjct 506343 AG-GACGTCATTGTCGAGGCTGTTGGCATCGAGCAGGAGTTCCTTACTGACGCTCTGCCC 506285
Query 47400 GAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGAC 47459
| | | || |||||||| || ||||| | |||||||||| |||||||| |||
Sbjct 506284 TGTGGTCTGCTTGGTATGAACGCCAAGCTGATGTGCCAGTACATCGAGTTTGTCGCTGAC 506225
Query 47460 CGCCTGCTCGTTCAGCTAAAGTATC-CCAAGATTTACCACACCGAGAATCCATTCGAGTT 47518
|| ||||| ||| || ||| | ||||| | || || || || || ||||| ||
Sbjct 506224 CGTCTGCTAGTTGCTCTCG-GTAACTCCAAGGTGTATAACTCCACCAACCCCTTCGACTT 506166
Query 47519 TATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 47569
||| | ||||| || || | |||||||||||||||||||||||||| ||
Sbjct 506165 CATGGAGAACATCTCTCTGGCCGGCAAGACCAACTTTTTCGAGAAGCGAGT 506115
>seq6
Length=4002965
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||||| || | ||| | || ||||| || || || ||||| ||
Sbjct 1337580 CCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1337521
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || ||||| || || ||| |||| | ||||||||| || || ||
Sbjct 1337520 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 1337461
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| ||| || ||||| ||||| ||| |||||| | | ||| ||
Sbjct 1337460 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGT-CGATGGTGTCGGAAGACTCCAC 1337402
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | || || ||||| || || || ||||||||||||||
Sbjct 1337401 CTCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCAT 1337354
Score = 95.1 bits (104), Expect = 1e-14
Identities = 166/238 (70%), Gaps = 3/238 (1%)
Strand=Plus/Minus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| || || | ||||| || | ||| | || ||||| || || || ||||| |||
Sbjct 1219246 CCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 1219187
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || ||||| || || ||| |||| | ||||||||| || || ||
Sbjct 1219186 AGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 1219127
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| ||| || ||||| |||| || | |||||| | ||| ||
Sbjct 1219126 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCAATGGTGTCAGAGGACTCCAC 1219068
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA-TGGCTTATTT 127122
|||| ||| | || ||||| || || || || ||||| || |||| ||| ||| ||
Sbjct 1219067 CTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCACTGGGTTAGTT 1219010
Score = 87.8 bits (96), Expect = 2e-12
Identities = 233/346 (67%), Gaps = 10/346 (3%)
Strand=Plus/Minus
Query 147219 CAGCCCGAGACCTCCGCCCAGA-TTCGAAATCAAAGCGGACTCGTGCAAGGTCTTGTAGA 147277
||| |||| ||| ||| | ||| || ||||||| ||| | | | ||| | |||||
Sbjct 3933787 CAGACCGATACCGCCGGC-AGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAGA 3933729
Query 147278 TGCCGTCGATGCTGTCTTCCTTGATGCATTGC--AGGAAACACGAACACATTTGGGGACG 147335
||||||||||| ||| ||||| ||| ||| ||||||||||| |||| || || |
Sbjct 3933728 TGCCGTCGATGGAGTCGTCCTTCATG--TTGACAAGGAAACACGACGACATCTGAGGCTG 3933671
Query 147336 ACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTGC-CCAGACTCATCA 147394
|| || || | || |||||| ||||| ||||| || | | || |||
Sbjct 3933670 GGGAGTTCCGGCGTTGTAGAGAGTGGGGGAAGCGTGAGTGAA-GTACTTCTGAGACATAT 3933612
Query 147395 ATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGACGCGCA 147454
| | || || |||||||| | || || |||||||| || | | | ||| ||||
Sbjct 3933611 AGTTGTAGGTCTCAATGGCCCGGGCAATGTTGTCGCCGTGGATACCGACAGAGACTCGCA 3933552
Query 147455 TGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTGACTTTTAATAGATATCCATTGG 147514
||| ||| || |||||||| || |||| | | |||||| | || ||| | | |
Sbjct 3933551 TGATCATCTGTTGGGGTCGCTCGGCAACAGCACCGTTGACTCGCAGCAGGTATGC-TCGC 3933493
Query 147515 T-CAGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTCCCTGTTGT 147559
| ||| || ||||| |||||||| |||||| | |||| | || ||
Sbjct 3933492 TCCAGGGTCTTGAAGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGT 3933447
>seq5
Length=4198534
Score = 96.9 bits (106), Expect = 3e-15
Identities = 145/200 (73%), Gaps = 6/200 (3%)
Strand=Plus/Minus
Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATC-GTGCGAGAATCGTCT-AGCTGTTTTC 126974
|| ||||| || ||||| ||||| ||| | || ||| ||| || ||||| || |
Sbjct 2277405 GTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAAGTTCGACCATCCTCGGAGCTGCTTAC 2277346
Query 126975 CAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCT 127034
||||| | |||| ||||||||| || || || || |||||||||||| || || ||
Sbjct 2277345 CAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACT 2277286
Query 127035 TGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGT-TTTGCCGGTCAGA 127093
| | ||| |||| |||||| | | ||| || |||| || | || ||| || ||||||
Sbjct 2277285 TTAATTG-TCGATGGTGTCGGAAGACTCAACCTCGAAGG--ATGGTCTTTTCCAGTCAGA 2277229
Query 127094 GTTTTTACAAAAATCTGCAT 127113
|| || || |||||||||||
Sbjct 2277228 GTCTTGACGAAAATCTGCAT 2277209
Score = 87.8 bits (96), Expect = 2e-12
Identities = 117/158 (74%), Gaps = 6/158 (4%)
Strand=Plus/Minus
Query 126958 ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTT 127017
||| || ||||| || |||||| | |||| ||||||||| || || || || |||||||
Sbjct 2276701 ATCCTCGAGCTGCTTACCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAAT--CCTCCTT 2276644
Query 127018 GTCCGTGATTTTCTGCTTGAG--TTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTC 127075
|||| ||| | | ||||| |||| ||| |||||| | | ||| || |||| ||
Sbjct 2276643 GTCC-TGAATCTTGACTTGACAATTGT-CGATGGTGTCGGAAGACTCAACCTCGAGAGTG 2276586
Query 127076 ACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
| || || || |||||||| || || |||||||||||
Sbjct 2276585 ATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 2276548
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500758393680
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