Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12]
7 sequences; 20,547,992 total letters
Query= NC_013756.1
Length=368454
Score E
Sequences producing significant alignments: (Bits) Value
seq6 156 1e-32
seq5 98.7 2e-15
>seq6
Length=4002965
Score = 156 bits (172), Expect = 1e-32
Identities = 166/219 (76%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
|||||||| |||||| || |||||||| |||||||| |||| ||||||||||| | ||
Sbjct 1337575 TCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGT 1337516
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| || || || |||||||| ||||||||||| || |||||||||||||| ||||||
Sbjct 1337515 TCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCC 1337456
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|| ||||| ||||| ||| ||| |||| |||||| | | || || || |
Sbjct 1337455 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAG 1337396
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| |||||||| || || || || |||||||| ||
Sbjct 1337395 GGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTG 1337357
Score = 134 bits (148), Expect = 3e-26
Identities = 161/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
||| |||| ||| || || |||||||| |||||||| |||| ||||||||| | | |||
Sbjct 1219241 TCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGT 1219182
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| || || || |||||||| ||||||||||| || |||||||||||||| |||||
Sbjct 1219181 TCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATTCC 1219122
Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587
|| ||||| ||||| ||| ||| || | |||||| | | || || || |
Sbjct 1219121 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAG 1219062
Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
||||| ||||| || || || || || ||||| |||||
Sbjct 1219061 GGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTG 1219023
>seq5
Length=4198534
Score = 98.7 bits (108), Expect = 2e-15
Identities = 159/221 (72%), Gaps = 6/221 (3%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAA-AG 199466
||| |||| || | || |||||||| ||||| || || | ||| ||||| | || ||
Sbjct 2276767 TCGGAGTCGGAGAAAGAGATGGAGAGTGGACTC-TTCTGAATGTTTTAGTCCGGAAAGAG 2276709
Query 199467 TCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTC 199526
| ||||| || |||||||| || ||||| || || |||||||||||||| || ||
Sbjct 2276708 TTGGACCATCCTCGAGCTGCTTACCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAA-TC 2276650
Query 199527 CTTCTCGCTCCTGAATCTTTTGCTTCACGGAT-TCGACGGTGTCTGTTGTTTCTACATCC 199585
|| || | ||||||||| || ||| || | |||| |||||| | | || || ||
Sbjct 2276649 CTCCTTG-TCCTGAATC-TTGACTTGACAATTGTCGATGGTGTCGGAAGACTCAACCTCG 2276592
Query 199586 AACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626
| ||||| ||||| || || ||||| || || ||||| ||
Sbjct 2276591 AGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTG 2276551
Score = 89.7 bits (98), Expect = 1e-12
Identities = 104/138 (75%), Gaps = 2/138 (1%)
Strand=Plus/Minus
Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467
||| |||| || || || |||||||| |||||||| || | ||||||||||| | |||
Sbjct 2277202 TCGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAG-AAGAGT 2277144
Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527
| ||||| || |||||||| || || || || || |||||||||| ||| || ||
Sbjct 2277143 TCGGCCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTTCGG-GGGATCCC 2277085
Query 199528 TTCTCGCTCCTGAATCTT 199545
||| |||||||||||
Sbjct 2277084 TTCCTTGTCCTGAATCTT 2277067
Score = 89.7 bits (98), Expect = 1e-12
Identities = 151/211 (72%), Gaps = 11/211 (5%)
Strand=Plus/Minus
Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCA-AAGTCCTTCCATCTTC 199479
|| || ||| |||| |||||||| || | ||||||||| | | |||| | ||||| ||
Sbjct 2277416 ACGAGATGG-GAGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAAGTTCGACCATCCTC 2277358
Query 199480 C-AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCT 199538
|||||||| || ||||| || || |||||||||||||| |||||| || ||||
Sbjct 2277357 GGAGCTGCTTACCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCT 2277298
Query 199539 GAATCTTTTGCTTCACGGAT--TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596
||||||| ||| | || |||| |||||| | | || || || || ||| ||
Sbjct 2277297 GAATCTTGGACTTTA---ATTGTCGATGGTGTCGGAAGACTCAACCTCGAA--GGATGGT 2277243
Query 199597 C-TTACCCGTGAGAGTTTTCACAAAAATTTG 199626
| || || || ||||| || || ||||| ||
Sbjct 2277242 CTTTTCCAGTCAGAGTCTTGACGAAAATCTG 2277212
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1178921494265469
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |