Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq6 156 1e-32 seq5 98.7 2e-15 >seq6 Length=4002965 Score = 156 bits (172), Expect = 1e-32 Identities = 166/219 (76%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 |||||||| |||||| || |||||||| |||||||| |||| ||||||||||| | || Sbjct 1337575 TCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGT 1337516 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || || || |||||||| ||||||||||| || |||||||||||||| |||||| Sbjct 1337515 TCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCC 1337456 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| ||||| ||| ||| |||| |||||| | | || || || | Sbjct 1337455 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAG 1337396 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| |||||||| || || || || |||||||| || Sbjct 1337395 GGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTG 1337357 Score = 134 bits (148), Expect = 3e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| ||| || || |||||||| |||||||| |||| ||||||||| | | ||| Sbjct 1219241 TCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGT 1219182 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | || || || |||||||| ||||||||||| || |||||||||||||| ||||| Sbjct 1219181 TCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATTCC 1219122 Query 199528 TTCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAA 199587 || ||||| ||||| ||| ||| || | |||||| | | || || || | Sbjct 1219121 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAG 1219062 Query 199588 CGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || || || || ||||| ||||| Sbjct 1219061 GGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTG 1219023 >seq5 Length=4198534 Score = 98.7 bits (108), Expect = 2e-15 Identities = 159/221 (72%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAA-AG 199466 ||| |||| || | || |||||||| ||||| || || | ||| ||||| | || || Sbjct 2276767 TCGGAGTCGGAGAAAGAGATGGAGAGTGGACTC-TTCTGAATGTTTTAGTCCGGAAAGAG 2276709 Query 199467 TCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTC 199526 | ||||| || |||||||| || ||||| || || |||||||||||||| || || Sbjct 2276708 TTGGACCATCCTCGAGCTGCTTACCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAA-TC 2276650 Query 199527 CTTCTCGCTCCTGAATCTTTTGCTTCACGGAT-TCGACGGTGTCTGTTGTTTCTACATCC 199585 || || | ||||||||| || ||| || | |||| |||||| | | || || || Sbjct 2276649 CTCCTTG-TCCTGAATC-TTGACTTGACAATTGTCGATGGTGTCGGAAGACTCAACCTCG 2276592 Query 199586 AACGTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | ||||| ||||| || || ||||| || || ||||| || Sbjct 2276591 AGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTG 2276551 Score = 89.7 bits (98), Expect = 1e-12 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 199408 TCGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGT 199467 ||| |||| || || || |||||||| |||||||| || | ||||||||||| | ||| Sbjct 2277202 TCGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAG-AAGAGT 2277144 Query 199468 CCTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCC 199527 | ||||| || |||||||| || || || || || |||||||||| ||| || || Sbjct 2277143 TCGGCCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTTCGG-GGGATCCC 2277085 Query 199528 TTCTCGCTCCTGAATCTT 199545 ||| ||||||||||| Sbjct 2277084 TTCCTTGTCCTGAATCTT 2277067 Score = 89.7 bits (98), Expect = 1e-12 Identities = 151/211 (72%), Gaps = 11/211 (5%) Strand=Plus/Minus Query 199421 ACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCA-AAGTCCTTCCATCTTC 199479 || || ||| |||| |||||||| || | ||||||||| | | |||| | ||||| || Sbjct 2277416 ACGAGATGG-GAGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAAGTTCGACCATCCTC 2277358 Query 199480 C-AGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCT 199538 |||||||| || ||||| || || |||||||||||||| |||||| || |||| Sbjct 2277357 GGAGCTGCTTACCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCT 2277298 Query 199539 GAATCTTTTGCTTCACGGAT--TCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||||||| ||| | || |||| |||||| | | || || || || ||| || Sbjct 2277297 GAATCTTGGACTTTA---ATTGTCGATGGTGTCGGAAGACTCAACCTCGAA--GGATGGT 2277243 Query 199597 C-TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 | || || || ||||| || || ||||| || Sbjct 2277242 CTTTTCCAGTCAGAGTCTTGACGAAAATCTG 2277212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921494265469