Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2 325 4e-84 seq6 116 4e-21 >seq2 Length=3044971 Score = 325 bits (360), Expect = 4e-84 Identities = 606/879 (69%), Gaps = 17/879 (2%) Strand=Plus/Plus Query 132625 TTCTCaaaaaaaTTAGTTTTTCCCTCCAAGGAAATGAGCGTCATAAAATCCAAGGGGTTG 132684 ||||| ||||| || || || || ||| || ||| | ||| || || ||||||||| Sbjct 506121 TTCTCGAAAAAGTTGGTCTTGCCGGCCAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTG 506180 Query 132685 GCTGTGTTGTAGTGCTTGGTG---CCGATCAGGTCGACGAGCAGCCTGTCGGCCACGAAC 132741 | | ||| || ||||| | |||| || | || ||||| | ||| || || ||| Sbjct 506181 GTGGAGTTATACACCTTGGAGTTACCGAG-AG--CAACTAGCAGACGGTCAGCGACAAAC 506237 Query 132742 TCGATGTATTGCGACATG-GTTTCGCAATTAAGTCCCAGCAGACGCACCGG-CAGCGCTT 132799 |||||||| || |||| | || || || | || ||||||| ||| || ||| || | Sbjct 506238 TCGATGTACTGGCACATCAGCTTGGCG-TTCATACCAAGCAGAC-CACAGGGCAGAGCGT 506295 Query 132800 CGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCGGTGACGATTTCCCTAACGCGCGCCG 132859 | || || || ||||||||| | || || ||| | || ||| ||| | | Sbjct 506296 CAGTAAGGAACTCCTGCTCGATGCCAACAGCCTCGACAATGACGTCCTCAACAATCTTCT 506355 Query 132860 CGCTCGGCCGTTGCACCAAATGCTTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCT 132919 || || | | | | ||| ||| | || ||| |||||||| |||| |||| Sbjct 506356 TTGAGGGTCGGTTCTCAAGGTGCGAGAAAAGCAGGCAGGCAAAGTCAGTGTGCAGACCCT 506415 Query 132920 CGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGA 132979 |||| | ||| ||||| |||||| ||| || | ||| |||||||| || || || |||| Sbjct 506416 CGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGACCTCGCTTCTTGA 506475 Query 132980 GCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCA 133039 |||| || |||| ||||||| ||| || ||||||| |||||||||||| || || || | Sbjct 506476 GCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACGGCGGCAAAGGCAA 506535 Query 133040 CCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCT 133099 || ||||| || || |||| |||| | || |||||| || ||||| ||||||| Sbjct 506536 TGAGTCGCTCTCCAAAGGTGGACTCTTCGTCGGAGATCCACTTGAGGGCCCAGTCGGCCT 506595 Query 133100 TTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTT--CTCTTCCGA 133157 ||| |||| ||| || || || ||||||||||| ||| | | || || ||||| | Sbjct 506596 TTTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAAC--AGGTAGGTTCGCTCTTTGGG 506653 Query 133158 GGAACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGC 133217 | | ||| |||||||| || ||| || | || ||||| | ||||||||| Sbjct 506654 GTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCAT 506713 Query 133218 GATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTC 133277 ||| || |||||||| |||||| |||||| ||||||| || | ||| ||||| Sbjct 506714 GATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGCCTGCACCTCGCCGGAGAATCGCTC 506773 Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337 ||||| || ||||| ||||| |||||| ||| || || || || || ||||| ||| Sbjct 506774 AACCAGGTTCTCGTTAACGATACCGTCGGAGGCAGCAAAGAATGCGAGAACGTGGGAGAT 506833 Query 133338 GAAATGGCGCTCGTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTC 133394 ||| ||||| | || ||| | | ||||||||| | | ||||||| || || Sbjct 506834 GAAGAACCGCTCATCGTTGTTGAGTCTGTTCTCCCAGTCACCCATGTCCTTTCCAAGATC 506893 Query 133395 CACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGA 133454 | |||||| | ||||| || || |||||||| || |||||||| ||| || || Sbjct 506894 AATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCCAGATTTCGTG 506953 Query 133455 ATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493 || || ||||| || | ||||||||| || |||| || Sbjct 506954 GTACTGGATGGGGAAGAGCACAAACCGTCGATGGTTCTC 506992 >seq6 Length=4002965 Score = 116 bits (128), Expect = 4e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 38242 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCA 38301 ||||||| || || || || || || || || || || |||||| |||| || ||| | Sbjct 1337352 AAATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTCGAGGTGGAGTCTT 1337411 Query 38302 CCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | |||| | || || |||| ||||| |||||||||||| | ||| Sbjct 1337412 CCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGAC 1337470 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| || || ||||| || |||| || ||||| |||||| Sbjct 1337471 CAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTAC 1337530 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| ||||| | || || ||| | || ||||| Sbjct 1337531 AACATCCAGAAGGAGTCCACTCTCCATCTCGTCCTGCG 1337568 Score = 114 bits (126), Expect = 1e-20 Identities = 156/215 (73%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 38245 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACCG 38304 ||||||| || || || || || || ||||| || |||||| |||| || ||| || | | Sbjct 1219021 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAGTCCTCTG 1219080 Query 38305 ACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 ||| | | | |||| | || || |||| ||||| |||||||| ||| | ||||| Sbjct 1219081 ACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAG 1219139 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| || || ||||| || |||| || || || |||||||||| Sbjct 1219140 CAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACTCTTTCCGACTACAAC 1219199 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| ||||| | || || ||| | || ||||| Sbjct 1219200 ATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCG 1219234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172756234880