Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq5 149 2e-30 seq4 149 2e-30 seq1 149 2e-30 seq6 127 8e-24 >seq5 Length=4198534 Score = 149 bits (164), Expect = 2e-30 Identities = 281/413 (68%), Gaps = 3/413 (1%) Strand=Plus/Plus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 ||||||||| | || | || | | || || ||||| || || | || ||||| Sbjct 12001 GGAAAGCCCAACATCGAGGTCGAATTCAAGGGCGAAACCAAGGTCTTCACCCCCGAAGAG 12060 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || || || ||| | || || || ||||||||||| || || ||| | || | Sbjct 12061 ATCTCTTCCATGATCCTCACCAAGATGAAAGAAACTGCTGAGGGATACCTCGGAACAAAG 12120 Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || | || || || ||||| |||||||| || ||||||||| | || || || || || Sbjct 12121 GTGAACGACGCTGTCATTACCGTTCCCGCATACTTCAATGATTCTCAGCGACAGGCCACC 12180 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 || || ||||| | |||||||||| | ||||||| ||||||| || || ||||| || Sbjct 12181 AAGGACGCAGGTCTTATTGCTGGTCTGAATGTTCAGAGAATTATCAACGAGCCTACCGCT 12240 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTA 451492 || || | || || || || | || || || || | || ||| | | | Sbjct 12241 GCCGCCATTGCCTACGGTCTCGATAA---GAAGGAGACTGGCGAGCGAAACGTGCTCATT 12297 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 || ||| |||| ||||||||| |||| |||| | || || || ||||| || | ||| Sbjct 12298 TTCGATCTTGGAGGAGGAACTTTTGATGTTTCTCTTCTGTCTATCGAAGACGGCATCTTT 12357 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || ||||| ||| ||| ||||| ||||| || ||||| || |||| || Sbjct 12358 GAGGTCAAGGCCACCGCTGGAGATACCCATCTCGGTGGTGAGGACTTTGACAA 12410 Score = 149 bits (164), Expect = 2e-30 Identities = 281/413 (68%), Gaps = 3/413 (1%) Strand=Plus/Minus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 ||||||||| | || | || | | || || ||||| || || | || ||||| Sbjct 4164471 GGAAAGCCCAACATCGAGGTCGAATTCAAGGGCGAAACCAAGGTCTTCACCCCCGAAGAG 4164412 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || || || ||| | || || || ||||||||||| || || ||| | || | Sbjct 4164411 ATCTCTTCCATGATCCTCACCAAGATGAAAGAAACTGCTGAGGGATACCTCGGAACAAAG 4164352 Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || | || || || ||||| |||||||| || ||||||||| | || || || || || Sbjct 4164351 GTGAACGACGCTGTCATTACCGTTCCCGCATACTTCAATGATTCTCAGCGACAGGCCACC 4164292 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 || || ||||| | |||||||||| | ||||||| ||||||| || || ||||| || Sbjct 4164291 AAGGACGCAGGTCTTATTGCTGGTCTGAATGTTCAGAGAATTATCAACGAGCCTACCGCT 4164232 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTA 451492 || || | || || || || | || || || || | || ||| | | | Sbjct 4164231 GCCGCCATTGCCTACGGTCTCGATAA---GAAGGAGACTGGCGAGCGAAACGTGCTCATT 4164175 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 || ||| |||| ||||||||| |||| |||| | || || || ||||| || | ||| Sbjct 4164174 TTCGATCTTGGAGGAGGAACTTTTGATGTTTCTCTTCTGTCTATCGAAGACGGCATCTTT 4164115 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || ||||| ||| ||| ||||| ||||| || ||||| || |||| || Sbjct 4164114 GAGGTCAAGGCCACCGCTGGAGATACCCATCTCGGTGGTGAGGACTTTGACAA 4164062 >seq4 Length=3629463 Score = 149 bits (164), Expect = 2e-30 Identities = 281/413 (68%), Gaps = 3/413 (1%) Strand=Plus/Minus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 ||||||||| | || | || | | || || ||||| || || | || ||||| Sbjct 3625150 GGAAAGCCCAACATCGAGGTCGAATTCAAGGGCGAAACCAAGGTCTTCACCCCCGAAGAG 3625091 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || || || ||| | || || || ||||||||||| || || ||| | || | Sbjct 3625090 ATCTCTTCCATGATCCTCACCAAGATGAAAGAAACTGCTGAGGGATACCTCGGAACAAAG 3625031 Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || | || || || ||||| |||||||| || ||||||||| | || || || || || Sbjct 3625030 GTGAACGACGCTGTCATTACCGTTCCCGCATACTTCAATGATTCTCAGCGACAGGCCACC 3624971 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 || || ||||| | |||||||||| | ||||||| ||||||| || || ||||| || Sbjct 3624970 AAGGACGCAGGTCTTATTGCTGGTCTGAATGTTCAGAGAATTATCAACGAGCCTACCGCT 3624911 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTA 451492 || || | || || || || | || || || || | || ||| | | | Sbjct 3624910 GCCGCCATTGCCTACGGTCTCGATAA---GAAGGAGACTGGCGAGCGAAACGTGCTCATT 3624854 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 || ||| |||| ||||||||| |||| |||| | || || || ||||| || | ||| Sbjct 3624853 TTCGATCTTGGAGGAGGAACTTTTGATGTTTCTCTTCTGTCTATCGAAGACGGCATCTTT 3624794 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || ||||| ||| ||| ||||| ||||| || ||||| || |||| || Sbjct 3624793 GAGGTCAAGGCCACCGCTGGAGATACCCATCTCGGTGGTGAGGACTTTGACAA 3624741 >seq1 Length=2257857 Score = 149 bits (164), Expect = 2e-30 Identities = 281/413 (68%), Gaps = 3/413 (1%) Strand=Plus/Minus Query 451193 GGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGAA 451252 ||||||||| | || | || | | || || ||||| || || | || ||||| Sbjct 2253582 GGAAAGCCCAACATCGAGGTCGAATTCAAGGGCGAAACCAAGGTCTTCACCCCCGAAGAG 2253523 Query 451253 ATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCCA 451312 || || || ||| | || || || ||||||||||| || || ||| | || | Sbjct 2253522 ATCTCTTCCATGATCCTCACCAAGATGAAAGAAACTGCTGAGGGATACCTCGGAACAAAG 2253463 Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || | || || || ||||| |||||||| || ||||||||| | || || || || || Sbjct 2253462 GTGAACGACGCTGTCATTACCGTTCCCGCATACTTCAATGATTCTCAGCGACAGGCCACC 2253403 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 || || ||||| | |||||||||| | ||||||| ||||||| || || ||||| || Sbjct 2253402 AAGGACGCAGGTCTTATTGCTGGTCTGAATGTTCAGAGAATTATCAACGAGCCTACCGCT 2253343 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTA 451492 || || | || || || || | || || || || | || ||| | | | Sbjct 2253342 GCCGCCATTGCCTACGGTCTCGATAA---GAAGGAGACTGGCGAGCGAAACGTGCTCATT 2253286 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 || ||| |||| ||||||||| |||| |||| | || || || ||||| || | ||| Sbjct 2253285 TTCGATCTTGGAGGAGGAACTTTTGATGTTTCTCTTCTGTCTATCGAAGACGGCATCTTT 2253226 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || ||||| ||| ||| ||||| ||||| || ||||| || |||| || Sbjct 2253225 GAGGTCAAGGCCACCGCTGGAGATACCCATCTCGGTGGTGAGGACTTTGACAA 2253173 >seq6 Length=4002965 Score = 127 bits (140), Expect = 8e-24 Identities = 278/414 (67%), Gaps = 3/414 (1%) Strand=Plus/Minus Query 451192 AGGAAAGCCCTATATTCAAGTAAATTATAAAGGTGAAACTAAAACTTTTGCTCCTGAAGA 451251 |||||||||| | || | || | | || ||||| || || || | || || || Sbjct 3259429 AGGAAAGCCCAACATCGAGGTGGAGTTCAAGGGTGAGACCAAGGTCTTCACCCCCGAGGA 3259370 Query 451252 AATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATTGGTTCTCC 451311 || || || ||| | || ||||| ||||| || || || || || | ||| Sbjct 3259369 GATCTCTTCCATGATCCTCACTAAGATGAAGGAGACCGCTGAGGGCTACCTCGGTGGAAA 3259310 Query 451312 AGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAAC 451371 || |||||||| || || ||||| || ||||| ||||| || | || || || || || Sbjct 3259309 GGTCACTGATGCCGTCATCACTGTCCCTGCTTACTTCAACGACTCCCAGCGACAGGCTAC 3259250 Query 451372 TAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGC 451431 || || || || | |||||| ||| | || || | ||||| || || || ||||| || Sbjct 3259249 CAAGGACGCTGGTCTTATTGCCGGTCTCAACGTCCAGCGAATCATCAACGAGCCTACCGC 3259190 Query 451432 AGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGT 451491 |||||| | || || || || ||| || || || | | || ||| || | | Sbjct 3259189 AGCTGCCATTGCCTACGGTCT-GGACAAG--AAGGAGGCTGGTGAGCGAAACGTTCTCAT 3259133 Query 451492 ATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATT 451551 || ||| |||||||||||||| ||| || | || || || || ||||| | || Sbjct 3259132 CTTCGATCTTGGTGGAGGAACTTTCGATGTCTCCCTCCTCTCTATCGAGGATGGTATTTT 3259073 Query 451552 TGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAA 451605 || || ||||| ||| |||||| || ||||| || ||||| ||| ||||||| Sbjct 3259072 CGAGGTCAAGGCCACCGCTGGTGACACCCATCTTGGTGGTGAGGATTTTGATAA 3259019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975718222802756