Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12]
7 sequences; 20,547,992 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq6 170 4e-37
seq5 131 4e-25
>seq6
Length=4002965
Score = 170 bits (188), Expect = 4e-37
Identities = 181/238 (76%), Gaps = 2/238 (1%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|| ||||| || ||| || || ||||||||||| || || || ||||| |||| ||||||
Sbjct 1219241 TCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGT 1219182
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
|| || || |||||||||||||| |||||||||||||| || ||||| || || || ||
Sbjct 1219181 TCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATTCC 1219122
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098
|| ||||| || || || ||||||||| ||||||||||| || ||||| || ||
Sbjct 1219121 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAG 1219062
Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTTACTTGGTG 195156
||| | ||||| || || | || || || || | ||||| | ||||| ||||||
Sbjct 1219061 GGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCACT--GGGTTAGTTGGTG 1219006
Score = 154 bits (170), Expect = 3e-32
Identities = 166/220 (75%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982
|||| || || || || ||||||||||| || || || ||||| || | ||| ||||
Sbjct 1337571 AGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGG 1337512
Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042
|| || |||||||||||||| |||||||||||||| || ||||| || ||||| || ||
Sbjct 1337511 CCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCC 1337452
Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102
||||| || || || ||||||||| || |||||||| ||| ||||| || |||||
Sbjct 1337451 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTG 1337392
Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142
| ||||| || || | || || || || | |||||||
Sbjct 1337391 ATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1337352
>seq5
Length=4198534
Score = 131 bits (144), Expect = 4e-25
Identities = 167/224 (75%), Gaps = 6/224 (3%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATC-GGCAAGAG 194977
|| ||||| | || || || ||||||||||||| | |||| || || || || |||||
Sbjct 2276767 TCGGAGTCGGAGAAAGAGATGGAGAGTGGACTCTTCT-GAATGTTTTAGTCCGGAAAGAG 2276709
Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037
|| ||||| |||||||||||||| ||||| || ||||| || ||||| || |||||
Sbjct 2276708 TTGGACCATCCTCGAGCTGCTTACCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAAT-- 2276651
Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGAC-GTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096
| || ||||| |||| | || |||||| || || |||||||| ||| || || ||
Sbjct 2276650 CCTCCTTGTCCTGAA-TCTTGACTTGACAATTGTCGATGGTGTCGGAAGACTCAACCTCG 2276592
Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | |||||||| |||| ||| || ||||| | |||||
Sbjct 2276591 AGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 2276548
Score = 122 bits (134), Expect = 2e-22
Identities = 152/202 (75%), Gaps = 6/202 (3%)
Strand=Plus/Minus
Query 194942 GAGTGGACTCTTTTTGAATATTGTAATCGGCAAGA-GTTCTCCCATCTTCG-AGCTGCTT 194999
|||||||||| || ||||| ||||| |||| |||| |||| ||||| ||| ||||||||
Sbjct 2277407 GAGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAAGTTCGACCATCCTCGGAGCTGCTT 2277348
Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059
||| ||||| || ||||| || ||||| || ||||| || || ||||| ||||| ||
Sbjct 2277347 ACCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGAATCTTGGA 2277288
Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC-TTTCCTGTCA 195118
||| | || || |||||||| ||| || || || | || | ||| ||||| ||||
Sbjct 2277287 CTTTA-ATTGTCGATGGTGTCGGAAGACTCAACCTCGAAGG--ATGGTCTTTTCCAGTCA 2277231
Query 195119 AAGTTTTTACGAACACTTGCAT 195140
||| || ||||| | |||||
Sbjct 2277230 GAGTCTTGACGAAAATCTGCAT 2277209
Score = 120 bits (132), Expect = 7e-22
Identities = 131/169 (78%), Gaps = 4/169 (2%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978
|| ||||| | ||| || || ||||||||||| || ||||| ||||| || | ||||||
Sbjct 2277202 TCGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAG-AAGAGT 2277144
Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038
|| ||||| |||||||||||||| || || || ||||| || |||| | | || || ||
Sbjct 2277143 TCGGCCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGT-TCGGGGGATCCC 2277085
Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAAT-GGTGTCCGAACT 195086
||| ||||| ||||| || |||||| || || || ||||| ||||||
Sbjct 2277084 TTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGGTGT-CGAACT 2277037
Score = 100 bits (110), Expect = 6e-16
Identities = 142/192 (74%), Gaps = 11/192 (6%)
Strand=Plus/Minus
Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009
||| ||||||| ||||| |||| ||| ||| ||||| |||||||||||||| |||||
Sbjct 2276955 TCTCTTTGAATGTTGTAGTCGGAAAG--TTCGACCATCCTCGAGCTGCTTACCAGCGAAA 2276898
Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069
|| | | || ||||| || ||||| ||| | ||||| |||| | || ||||| ||
Sbjct 2276897 ATCA---GCTGCTGGTCCGGGGGAAT-CCTCCCTTGTCCTGAA-TCTTGACTTGA--TTG 2276845
Query 195070 TCAATGGTGTCCGAACTTTCCACTTCAAG-GGTAACCGTCTTTCCTGTCAAAGTTTTTAC 195128
|| |||||||| ||| || || || || | | | || ||||| |||| ||| || ||
Sbjct 2276844 TCGATGGTGTCGGAAGACTCAACCTCGAGAGTTGATGGTTTTTCCAGTCAGAGTCTTGAC 2276785
Query 195129 GAACACTTGCAT 195140
||| | ||||||
Sbjct 2276784 GAA-AATTGCAT 2276774
Score = 89.7 bits (98), Expect = 1e-12
Identities = 127/169 (75%), Gaps = 10/169 (6%)
Strand=Plus/Minus
Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATT-GTAATCGG--CAAG 194975
|| ||||| | ||| || || ||||||| || || ||||| || ||| || | || |
Sbjct 2276113 TCGGAGTCGGAGAACGAGATGGAGAGTGG--TCCTTCTGAATGTTTGTAGTCAGGACAGG 2276056
Query 194976 AGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAAT 195035
|||| ||||| |||||||||||||| ||||| | ||||| || | ||| ||||||||
Sbjct 2276055 GGTTCGGCCATCCTCGAGCTGCTTACC-GCGAA-AACAGTCGCTGCT-GTCCGGAGGAAT 2275999
Query 195036 GCCTTCTTTGTCTTGAATTTTTTGCTTGACG-TTCTCAATGGTGTCCGA 195083
|| || ||||| ||||| || ||||||| || || |||||||| ||
Sbjct 2275998 TCC-TCCTTGTCCTGAATCTTGGACTTGACGTTTGTCGATGGTGTCGGA 2275951
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109481500493369
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |