Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq6 170 4e-37 seq5 131 4e-25 >seq6 Length=4002965 Score = 170 bits (188), Expect = 4e-37 Identities = 181/238 (76%), Gaps = 2/238 (1%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||||| || ||| || || ||||||||||| || || || ||||| |||| |||||| Sbjct 1219241 TCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGT 1219182 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || || || |||||||||||||| |||||||||||||| || ||||| || || || || Sbjct 1219181 TCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATTCC 1219122 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||| || || || ||||||||| ||||||||||| || ||||| || || Sbjct 1219121 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAG 1219062 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTTACTTGGTG 195156 ||| | ||||| || || | || || || || | ||||| | ||||| |||||| Sbjct 1219061 GGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCACT--GGGTTAGTTGGTG 1219006 Score = 154 bits (170), Expect = 3e-32 Identities = 166/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || || || || ||||||||||| || || || ||||| || | ||| |||| Sbjct 1337571 AGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGG 1337512 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || |||||||||||||| |||||||||||||| || ||||| || ||||| || || Sbjct 1337511 CCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCC 1337452 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| || || || ||||||||| || |||||||| ||| ||||| || ||||| Sbjct 1337451 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTG 1337392 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 | ||||| || || | || || || || | ||||||| Sbjct 1337391 ATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1337352 >seq5 Length=4198534 Score = 131 bits (144), Expect = 4e-25 Identities = 167/224 (75%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATC-GGCAAGAG 194977 || ||||| | || || || ||||||||||||| | |||| || || || || ||||| Sbjct 2276767 TCGGAGTCGGAGAAAGAGATGGAGAGTGGACTCTTCT-GAATGTTTTAGTCCGGAAAGAG 2276709 Query 194978 TTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGC 195037 || ||||| |||||||||||||| ||||| || ||||| || ||||| || ||||| Sbjct 2276708 TTGGACCATCCTCGAGCTGCTTACCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAAT-- 2276651 Query 195038 CTTCTTTGTCTTGAATTTTTTGCTTGAC-GTTCTCAATGGTGTCCGAACTTTCCACTTCA 195096 | || ||||| |||| | || |||||| || || |||||||| ||| || || || Sbjct 2276650 CCTCCTTGTCCTGAA-TCTTGACTTGACAATTGTCGATGGTGTCGGAAGACTCAACCTCG 2276592 Query 195097 AGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | |||||||| |||| ||| || ||||| | ||||| Sbjct 2276591 AGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 2276548 Score = 122 bits (134), Expect = 2e-22 Identities = 152/202 (75%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 194942 GAGTGGACTCTTTTTGAATATTGTAATCGGCAAGA-GTTCTCCCATCTTCG-AGCTGCTT 194999 |||||||||| || ||||| ||||| |||| |||| |||| ||||| ||| |||||||| Sbjct 2277407 GAGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAAGTTCGACCATCCTCGGAGCTGCTT 2277348 Query 195000 ACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTG 195059 ||| ||||| || ||||| || ||||| || ||||| || || ||||| ||||| || Sbjct 2277347 ACCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGAATCTTGGA 2277288 Query 195060 CTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTC-TTTCCTGTCA 195118 ||| | || || |||||||| ||| || || || | || | ||| ||||| |||| Sbjct 2277287 CTTTA-ATTGTCGATGGTGTCGGAAGACTCAACCTCGAAGG--ATGGTCTTTTCCAGTCA 2277231 Query 195119 AAGTTTTTACGAACACTTGCAT 195140 ||| || ||||| | ||||| Sbjct 2277230 GAGTCTTGACGAAAATCTGCAT 2277209 Score = 120 bits (132), Expect = 7e-22 Identities = 131/169 (78%), Gaps = 4/169 (2%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||||| | ||| || || ||||||||||| || ||||| ||||| || | |||||| Sbjct 2277202 TCGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAG-AAGAGT 2277144 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || ||||| |||||||||||||| || || || ||||| || |||| | | || || || Sbjct 2277143 TCGGCCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGT-TCGGGGGATCCC 2277085 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAAT-GGTGTCCGAACT 195086 ||| ||||| ||||| || |||||| || || || ||||| |||||| Sbjct 2277084 TTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGGTGT-CGAACT 2277037 Score = 100 bits (110), Expect = 6e-16 Identities = 142/192 (74%), Gaps = 11/192 (6%) Strand=Plus/Minus Query 194950 TCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAG 195009 ||| ||||||| ||||| |||| ||| ||| ||||| |||||||||||||| ||||| Sbjct 2276955 TCTCTTTGAATGTTGTAGTCGGAAAG--TTCGACCATCCTCGAGCTGCTTACCAGCGAAA 2276898 Query 195010 ATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTC 195069 || | | || ||||| || ||||| ||| | ||||| |||| | || ||||| || Sbjct 2276897 ATCA---GCTGCTGGTCCGGGGGAAT-CCTCCCTTGTCCTGAA-TCTTGACTTGA--TTG 2276845 Query 195070 TCAATGGTGTCCGAACTTTCCACTTCAAG-GGTAACCGTCTTTCCTGTCAAAGTTTTTAC 195128 || |||||||| ||| || || || || | | | || ||||| |||| ||| || || Sbjct 2276844 TCGATGGTGTCGGAAGACTCAACCTCGAGAGTTGATGGTTTTTCCAGTCAGAGTCTTGAC 2276785 Query 195129 GAACACTTGCAT 195140 ||| | |||||| Sbjct 2276784 GAA-AATTGCAT 2276774 Score = 89.7 bits (98), Expect = 1e-12 Identities = 127/169 (75%), Gaps = 10/169 (6%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATT-GTAATCGG--CAAG 194975 || ||||| | ||| || || ||||||| || || ||||| || ||| || | || | Sbjct 2276113 TCGGAGTCGGAGAACGAGATGGAGAGTGG--TCCTTCTGAATGTTTGTAGTCAGGACAGG 2276056 Query 194976 AGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAAT 195035 |||| ||||| |||||||||||||| ||||| | ||||| || | ||| |||||||| Sbjct 2276055 GGTTCGGCCATCCTCGAGCTGCTTACC-GCGAA-AACAGTCGCTGCT-GTCCGGAGGAAT 2275999 Query 195036 GCCTTCTTTGTCTTGAATTTTTTGCTTGACG-TTCTCAATGGTGTCCGA 195083 || || ||||| ||||| || ||||||| || || |||||||| || Sbjct 2275998 TCC-TCCTTGTCCTGAATCTTGGACTTGACGTTTGTCGATGGTGTCGGA 2275951 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481500493369