Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12]
7 sequences; 20,547,992 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq6 100 2e-16
seq5 93.3 3e-14
>seq6
Length=4002965
Score = 100 bits (110), Expect = 2e-16
Identities = 136/190 (72%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| ||||| |||| | || || ||||| || ||||| ||
Sbjct 1219210 TCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAG 1219151
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| ||||| |||||||| | || | ||||||||||| ||||| ||||||
Sbjct 1219150 ATAAGTCGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 1219091
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | ||| || ||| || |||| ||| || || || || || || ||||| |||
Sbjct 1219090 TCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACA 1219031
Query 34971 AAGATCTGCA 34980
||||| ||||
Sbjct 1219030 AAGATTTGCA 1219021
Score = 98.7 bits (108), Expect = 6e-16
Identities = 140/196 (71%), Gaps = 1/196 (1%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| ||||| |||||| |||| | || || ||||| || ||||| ||
Sbjct 1337544 TCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAG 1337485
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| ||||| |||||||| | || | ||||||||||| ||||| ||||||
Sbjct 1337484 ATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 1337425
Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970
| || | || | ||| || |||| ||| || || || || || || ||||| |||
Sbjct 1337424 TCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACA 1337365
Query 34971 AAGATCTGCATATTCG 34986
|| |||||||| ||||
Sbjct 1337364 AAAATCTGCAT-TTCG 1337350
>seq5
Length=4198534
Score = 93.3 bits (102), Expect = 3e-14
Identities = 138/191 (72%), Gaps = 5/191 (3%)
Strand=Plus/Minus
Query 34794 TTCTGAATGTTATAGTCC-GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATAT 34852
||||||||||| |||||| ||||| || | |||| || ||||| || || || || ||
Sbjct 2276734 TTCTGAATGTTTTAGTCCGGAAAGAGTTGGACCATCCTCGAGCTGCTTACCAGCGAAAAT 2276675
Query 34853 TAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG- 34911
||||| |||||||| | || | |||||||||| |||||| ||||| ||
Sbjct 2276674 CAGTCGCTGCTGGTCCGGGGGAA--TCCTCCTTGTCCTGAATCTT-GACTTGACAATTGT 2276618
Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971
| || | || | |||||| |||| || ||||| ||||| || |||||||| || |
Sbjct 2276617 CGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGA 2276558
Query 34972 AGATCTGCATA 34982
| |||||||||
Sbjct 2276557 AAATCTGCATA 2276547
Score = 87.8 bits (96), Expect = 1e-12
Identities = 144/200 (72%), Gaps = 16/200 (8%)
Strand=Plus/Minus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGC-TTCGTTCATCATCC-AGCTGTTTTCCGGCAA 34848
|| ||||||||||| ||||| ||||| |||| |||| || ||||| || || || |
Sbjct 2277399 TCCTTCTGAATGTTGTAGTCGGAAAGAAGTTCGACCATCCTCGGAGCTGCTTACCAGCGA 2277340
Query 34849 ATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT---CTGT--TT 34903
| || ||||| |||||||| | || | ||||||||||| |||||| || | ||
Sbjct 2277339 AAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTTAATT 2277280
Query 34904 GACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT-TTTTCCCGTGAGAG 34962
| | |||| | ||| | |||||| |||| || ||||| |||||| || ||||
Sbjct 2277279 GTC-GATGGTGTCG-----GAAGACTCAACCTCGAAGG--ATGGTCTTTTCCAGTCAGAG 2277228
Query 34963 TCTTCACAAAGATCTGCATA 34982
|||| || || |||||||||
Sbjct 2277227 TCTTGACGAAAATCTGCATA 2277208
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324633572304696
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |