Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq6 100 2e-16 seq5 93.3 3e-14 >seq6 Length=4002965 Score = 100 bits (110), Expect = 2e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| ||||| |||| | || || ||||| || ||||| || Sbjct 1219210 TCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAG 1219151 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| |||||||| | || | ||||||||||| ||||| |||||| Sbjct 1219150 ATAAGTCGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 1219091 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | ||| || ||| || |||| ||| || || || || || || ||||| ||| Sbjct 1219090 TCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACA 1219031 Query 34971 AAGATCTGCA 34980 ||||| |||| Sbjct 1219030 AAGATTTGCA 1219021 Score = 98.7 bits (108), Expect = 6e-16 Identities = 140/196 (71%), Gaps = 1/196 (1%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850 || ||||| ||||| ||||| |||||| |||| | || || ||||| || ||||| || Sbjct 1337544 TCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAG 1337485 Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910 || ||||| |||||||| | || | ||||||||||| ||||| |||||| Sbjct 1337484 ATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG 1337425 Query 34911 GCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACA 34970 | || | || | ||| || |||| ||| || || || || || || ||||| ||| Sbjct 1337424 TCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACA 1337365 Query 34971 AAGATCTGCATATTCG 34986 || |||||||| |||| Sbjct 1337364 AAAATCTGCAT-TTCG 1337350 >seq5 Length=4198534 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/191 (72%), Gaps = 5/191 (3%) Strand=Plus/Minus Query 34794 TTCTGAATGTTATAGTCC-GAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAATAT 34852 ||||||||||| |||||| ||||| || | |||| || ||||| || || || || || Sbjct 2276734 TTCTGAATGTTTTAGTCCGGAAAGAGTTGGACCATCCTCGAGCTGCTTACCAGCGAAAAT 2276675 Query 34853 TAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGATG- 34911 ||||| |||||||| | || | |||||||||| |||||| ||||| || Sbjct 2276674 CAGTCGCTGCTGGTCCGGGGGAA--TCCTCCTTGTCCTGAATCTT-GACTTGACAATTGT 2276618 Query 34912 CTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCACAA 34971 | || | || | |||||| |||| || ||||| ||||| || |||||||| || | Sbjct 2276617 CGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGA 2276558 Query 34972 AGATCTGCATA 34982 | ||||||||| Sbjct 2276557 AAATCTGCATA 2276547 Score = 87.8 bits (96), Expect = 1e-12 Identities = 144/200 (72%), Gaps = 16/200 (8%) Strand=Plus/Minus Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGC-TTCGTTCATCATCC-AGCTGTTTTCCGGCAA 34848 || ||||||||||| ||||| ||||| |||| |||| || ||||| || || || | Sbjct 2277399 TCCTTCTGAATGTTGTAGTCGGAAAGAAGTTCGACCATCCTCGGAGCTGCTTACCAGCGA 2277340 Query 34849 ATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTT---CTGT--TT 34903 | || ||||| |||||||| | || | ||||||||||| |||||| || | || Sbjct 2277339 AAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTTAATT 2277280 Query 34904 GACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT-TTTTCCCGTGAGAG 34962 | | |||| | ||| | |||||| |||| || ||||| |||||| || |||| Sbjct 2277279 GTC-GATGGTGTCG-----GAAGACTCAACCTCGAAGG--ATGGTCTTTTCCAGTCAGAG 2277228 Query 34963 TCTTCACAAAGATCTGCATA 34982 |||| || || ||||||||| Sbjct 2277227 TCTTGACGAAAATCTGCATA 2277208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633572304696