Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq5 159 3e-33 seq4 159 3e-33 seq1 159 3e-33 >seq5 Length=4198534 Score = 159 bits (176), Expect = 3e-33 Identities = 559/865 (65%), Gaps = 16/865 (2%) Strand=Plus/Plus Query 551727 GGAACTCATGACGTAACTCTTCTATCTCTCGAAGATGGTCTCTTTTCTGTATTAGCTACT 551786 |||||| ||| || ||||||| ||| ||||||| || ||||| || || || Sbjct 12313 GGAACTTTTGATGTTTCTCTTCTGTCTATCGAAGACGGCATCTTTGAGGTCAAGGCCACC 12372 Query 551787 AGTGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTG 551844 ||||||| | ||||| ||||| || || ||||| || |||| || | || | || Sbjct 12373 GCTGGAGATACCCATCTCGGTGGTGAGGACTTTGACAACCGACTCGTGAACCAC--TTTG 12430 Query 551845 TTGAAGATTTTAAACGAAAAAACAAAGTTGATCTATCTACATCTGCCAA--AGCTCTTCG 551902 || | || || || ||||| |||| || |||| || | ||| |||||| || Sbjct 12431 TTCAGGAGTTCAAGCGAAAGCACAAGAAGGAC--ATCTCCACCAACCAGCGAGCTCTCCG 12488 Query 551903 TCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCAC 551962 || || |||| ||||| || |||| || ||| | ||||| ||| |||| || | Sbjct 12489 ACGACTGCGAACCGCTTGTGAGCGAGCTAAGCGAACCCTTTCGTCTTCCGCTCAGACATC 12548 Query 551963 TATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAA 552022 ||||| | || || | | ||||| ||||||| | || | || | | ||| Sbjct 12549 CATTGAGATCGACTCTCTCTACGAGGGTATTGATTTCTACACCTCCATCACTCGAGCCCG 12608 Query 552023 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTT 552082 ||| || || | ||| |||||||| || || |||| ||||| || | || | Sbjct 12609 ATTCGAGGAACTCTGTCAGGATCTCTTCCGAGGCACTCTTGAGCCAGTTGAGAAGGTCCT 12668 Query 552083 AAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTAC 552142 | || | ||||| || || || ||| | || ||||| ||||||||||| || || Sbjct 12669 GAAGGACGCTAAGATGGACAAGGCCTCAGTCAACGAGATTGTCCTTGTTGGTGGCTCCAC 12728 Query 552143 AAGAATTCCTAAAATTCGCGAAATGTTAAGTTCT---TATTTCAATGGTAAAAAATTAAA 552199 |||| || || | | | | | | |||| | ||||| || ||| | | || Sbjct 12729 TCGAATCCCCAAGGTGC---AGAAGCTCGTTTCTGACTTCTTCAACGGAAAAGAGCTGAA 12785 Query 552200 TGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCT 552259 | | | | || || ||||||||||||||||| ||||| || | || || || || || Sbjct 12786 TCGATCTATCAACCCTGATGAGGCTGTTGCCTACGGTGCTGCCGTCCAGGCTGCCATCCT 12845 Query 552260 TTCTGGACAAAC-TGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTAT 552318 |||||| | || | | ||| || ||||| | || | || ||| |||| || | Sbjct 12846 TTCTGGTGACACTTCCTCTTCCACT-CAGGATATTCTGCTCCTTGACGTTGCTCCCCTTT 12904 Query 552319 CTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTA 552378 ||||||| | || || | ||| ||| ||||||| || || ||| |||| | |||| Sbjct 12905 CTCTTGGAATCGAGACTGCTGGCGGTGTTATGACCAAGCTCATCCCCCGAAACTCGACTA 12964 Query 552379 TTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAA 552438 | || || || ||| || || || || | || || || ||| ||| | Sbjct 12965 TCCCCACCAAGAAGTCTGAGACCTTCTCCACCTACGCTGACAACCAGCCTGGCGTTCTGA 13024 Query 552439 TTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTA 552498 |||| | ||||| || || || || || ||||| || ||||||| ||| Sbjct 13025 TTCAGGTCTTTGAGGGTGAGCGAGCTCAGACCAAGGATAACAACATCCTTGGTAAGTTTG 13084 Query 552499 ATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATA 552558 | | |||||||| || ||||||||||| || || || || ||||| || || || Sbjct 13085 AGCTGTCCGGTATTCCCCCCGCTCCTCGTGGTGTTCCTCAGATCGAAGTCACCTTTGACG 13144 Query 552559 TCGATGCCAATGGAATTTTGAATGT 552583 | |||||||| || ||| | || || Sbjct 13145 TTGATGCCAACGGTATTCTCAACGT 13169 Score = 159 bits (176), Expect = 3e-33 Identities = 559/865 (65%), Gaps = 16/865 (2%) Strand=Plus/Minus Query 551727 GGAACTCATGACGTAACTCTTCTATCTCTCGAAGATGGTCTCTTTTCTGTATTAGCTACT 551786 |||||| ||| || ||||||| ||| ||||||| || ||||| || || || Sbjct 4164159 GGAACTTTTGATGTTTCTCTTCTGTCTATCGAAGACGGCATCTTTGAGGTCAAGGCCACC 4164100 Query 551787 AGTGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTG 551844 ||||||| | ||||| ||||| || || ||||| || |||| || | || | || Sbjct 4164099 GCTGGAGATACCCATCTCGGTGGTGAGGACTTTGACAACCGACTCGTGAACCAC--TTTG 4164042 Query 551845 TTGAAGATTTTAAACGAAAAAACAAAGTTGATCTATCTACATCTGCCAA--AGCTCTTCG 551902 || | || || || ||||| |||| || |||| || | ||| |||||| || Sbjct 4164041 TTCAGGAGTTCAAGCGAAAGCACAAGAAGGAC--ATCTCCACCAACCAGCGAGCTCTCCG 4163984 Query 551903 TCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCAC 551962 || || |||| ||||| || |||| || ||| | ||||| ||| |||| || | Sbjct 4163983 ACGACTGCGAACCGCTTGTGAGCGAGCTAAGCGAACCCTTTCGTCTTCCGCTCAGACATC 4163924 Query 551963 TATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAA 552022 ||||| | || || | | ||||| ||||||| | || | || | | ||| Sbjct 4163923 CATTGAGATCGACTCTCTCTACGAGGGTATTGATTTCTACACCTCCATCACTCGAGCCCG 4163864 Query 552023 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTT 552082 ||| || || | ||| |||||||| || || |||| ||||| || | || | Sbjct 4163863 ATTCGAGGAACTCTGTCAGGATCTCTTCCGAGGCACTCTTGAGCCAGTTGAGAAGGTCCT 4163804 Query 552083 AAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTAC 552142 | || | ||||| || || || ||| | || ||||| ||||||||||| || || Sbjct 4163803 GAAGGACGCTAAGATGGACAAGGCCTCAGTCAACGAGATTGTCCTTGTTGGTGGCTCCAC 4163744 Query 552143 AAGAATTCCTAAAATTCGCGAAATGTTAAGTTCT---TATTTCAATGGTAAAAAATTAAA 552199 |||| || || | | | | | | |||| | ||||| || ||| | | || Sbjct 4163743 TCGAATCCCCAAGGTGC---AGAAGCTCGTTTCTGACTTCTTCAACGGAAAAGAGCTGAA 4163687 Query 552200 TGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCT 552259 | | | | || || ||||||||||||||||| ||||| || | || || || || || Sbjct 4163686 TCGATCTATCAACCCTGATGAGGCTGTTGCCTACGGTGCTGCCGTCCAGGCTGCCATCCT 4163627 Query 552260 TTCTGGACAAAC-TGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTAT 552318 |||||| | || | | ||| || ||||| | || | || ||| |||| || | Sbjct 4163626 TTCTGGTGACACTTCCTCTTCCACT-CAGGATATTCTGCTCCTTGACGTTGCTCCCCTTT 4163568 Query 552319 CTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTA 552378 ||||||| | || || | ||| ||| ||||||| || || ||| |||| | |||| Sbjct 4163567 CTCTTGGAATCGAGACTGCTGGCGGTGTTATGACCAAGCTCATCCCCCGAAACTCGACTA 4163508 Query 552379 TTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAA 552438 | || || || ||| || || || || | || || || ||| ||| | Sbjct 4163507 TCCCCACCAAGAAGTCTGAGACCTTCTCCACCTACGCTGACAACCAGCCTGGCGTTCTGA 4163448 Query 552439 TTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTA 552498 |||| | ||||| || || || || || ||||| || ||||||| ||| Sbjct 4163447 TTCAGGTCTTTGAGGGTGAGCGAGCTCAGACCAAGGATAACAACATCCTTGGTAAGTTTG 4163388 Query 552499 ATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATA 552558 | | |||||||| || ||||||||||| || || || || ||||| || || || Sbjct 4163387 AGCTGTCCGGTATTCCCCCCGCTCCTCGTGGTGTTCCTCAGATCGAAGTCACCTTTGACG 4163328 Query 552559 TCGATGCCAATGGAATTTTGAATGT 552583 | |||||||| || ||| | || || Sbjct 4163327 TTGATGCCAACGGTATTCTCAACGT 4163303 >seq4 Length=3629463 Score = 159 bits (176), Expect = 3e-33 Identities = 559/865 (65%), Gaps = 16/865 (2%) Strand=Plus/Minus Query 551727 GGAACTCATGACGTAACTCTTCTATCTCTCGAAGATGGTCTCTTTTCTGTATTAGCTACT 551786 |||||| ||| || ||||||| ||| ||||||| || ||||| || || || Sbjct 3624838 GGAACTTTTGATGTTTCTCTTCTGTCTATCGAAGACGGCATCTTTGAGGTCAAGGCCACC 3624779 Query 551787 AGTGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTG 551844 ||||||| | ||||| ||||| || || ||||| || |||| || | || | || Sbjct 3624778 GCTGGAGATACCCATCTCGGTGGTGAGGACTTTGACAACCGACTCGTGAACCAC--TTTG 3624721 Query 551845 TTGAAGATTTTAAACGAAAAAACAAAGTTGATCTATCTACATCTGCCAA--AGCTCTTCG 551902 || | || || || ||||| |||| || |||| || | ||| |||||| || Sbjct 3624720 TTCAGGAGTTCAAGCGAAAGCACAAGAAGGAC--ATCTCCACCAACCAGCGAGCTCTCCG 3624663 Query 551903 TCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCAC 551962 || || |||| ||||| || |||| || ||| | ||||| ||| |||| || | Sbjct 3624662 ACGACTGCGAACCGCTTGTGAGCGAGCTAAGCGAACCCTTTCGTCTTCCGCTCAGACATC 3624603 Query 551963 TATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAA 552022 ||||| | || || | | ||||| ||||||| | || | || | | ||| Sbjct 3624602 CATTGAGATCGACTCTCTCTACGAGGGTATTGATTTCTACACCTCCATCACTCGAGCCCG 3624543 Query 552023 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTT 552082 ||| || || | ||| |||||||| || || |||| ||||| || | || | Sbjct 3624542 ATTCGAGGAACTCTGTCAGGATCTCTTCCGAGGCACTCTTGAGCCAGTTGAGAAGGTCCT 3624483 Query 552083 AAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTAC 552142 | || | ||||| || || || ||| | || ||||| ||||||||||| || || Sbjct 3624482 GAAGGACGCTAAGATGGACAAGGCCTCAGTCAACGAGATTGTCCTTGTTGGTGGCTCCAC 3624423 Query 552143 AAGAATTCCTAAAATTCGCGAAATGTTAAGTTCT---TATTTCAATGGTAAAAAATTAAA 552199 |||| || || | | | | | | |||| | ||||| || ||| | | || Sbjct 3624422 TCGAATCCCCAAGGTGC---AGAAGCTCGTTTCTGACTTCTTCAACGGAAAAGAGCTGAA 3624366 Query 552200 TGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCT 552259 | | | | || || ||||||||||||||||| ||||| || | || || || || || Sbjct 3624365 TCGATCTATCAACCCTGATGAGGCTGTTGCCTACGGTGCTGCCGTCCAGGCTGCCATCCT 3624306 Query 552260 TTCTGGACAAAC-TGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTAT 552318 |||||| | || | | ||| || ||||| | || | || ||| |||| || | Sbjct 3624305 TTCTGGTGACACTTCCTCTTCCACT-CAGGATATTCTGCTCCTTGACGTTGCTCCCCTTT 3624247 Query 552319 CTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTA 552378 ||||||| | || || | ||| ||| ||||||| || || ||| |||| | |||| Sbjct 3624246 CTCTTGGAATCGAGACTGCTGGCGGTGTTATGACCAAGCTCATCCCCCGAAACTCGACTA 3624187 Query 552379 TTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAA 552438 | || || || ||| || || || || | || || || ||| ||| | Sbjct 3624186 TCCCCACCAAGAAGTCTGAGACCTTCTCCACCTACGCTGACAACCAGCCTGGCGTTCTGA 3624127 Query 552439 TTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTA 552498 |||| | ||||| || || || || || ||||| || ||||||| ||| Sbjct 3624126 TTCAGGTCTTTGAGGGTGAGCGAGCTCAGACCAAGGATAACAACATCCTTGGTAAGTTTG 3624067 Query 552499 ATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATA 552558 | | |||||||| || ||||||||||| || || || || ||||| || || || Sbjct 3624066 AGCTGTCCGGTATTCCCCCCGCTCCTCGTGGTGTTCCTCAGATCGAAGTCACCTTTGACG 3624007 Query 552559 TCGATGCCAATGGAATTTTGAATGT 552583 | |||||||| || ||| | || || Sbjct 3624006 TTGATGCCAACGGTATTCTCAACGT 3623982 >seq1 Length=2257857 Score = 159 bits (176), Expect = 3e-33 Identities = 559/865 (65%), Gaps = 16/865 (2%) Strand=Plus/Minus Query 551727 GGAACTCATGACGTAACTCTTCTATCTCTCGAAGATGGTCTCTTTTCTGTATTAGCTACT 551786 |||||| ||| || ||||||| ||| ||||||| || ||||| || || || Sbjct 2253270 GGAACTTTTGATGTTTCTCTTCTGTCTATCGAAGACGGCATCTTTGAGGTCAAGGCCACC 2253211 Query 551787 AGTGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTG 551844 ||||||| | ||||| ||||| || || ||||| || |||| || | || | || Sbjct 2253210 GCTGGAGATACCCATCTCGGTGGTGAGGACTTTGACAACCGACTCGTGAACCAC--TTTG 2253153 Query 551845 TTGAAGATTTTAAACGAAAAAACAAAGTTGATCTATCTACATCTGCCAA--AGCTCTTCG 551902 || | || || || ||||| |||| || |||| || | ||| |||||| || Sbjct 2253152 TTCAGGAGTTCAAGCGAAAGCACAAGAAGGAC--ATCTCCACCAACCAGCGAGCTCTCCG 2253095 Query 551903 TCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCAC 551962 || || |||| ||||| || |||| || ||| | ||||| ||| |||| || | Sbjct 2253094 ACGACTGCGAACCGCTTGTGAGCGAGCTAAGCGAACCCTTTCGTCTTCCGCTCAGACATC 2253035 Query 551963 TATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAA 552022 ||||| | || || | | ||||| ||||||| | || | || | | ||| Sbjct 2253034 CATTGAGATCGACTCTCTCTACGAGGGTATTGATTTCTACACCTCCATCACTCGAGCCCG 2252975 Query 552023 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTT 552082 ||| || || | ||| |||||||| || || |||| ||||| || | || | Sbjct 2252974 ATTCGAGGAACTCTGTCAGGATCTCTTCCGAGGCACTCTTGAGCCAGTTGAGAAGGTCCT 2252915 Query 552083 AAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTAC 552142 | || | ||||| || || || ||| | || ||||| ||||||||||| || || Sbjct 2252914 GAAGGACGCTAAGATGGACAAGGCCTCAGTCAACGAGATTGTCCTTGTTGGTGGCTCCAC 2252855 Query 552143 AAGAATTCCTAAAATTCGCGAAATGTTAAGTTCT---TATTTCAATGGTAAAAAATTAAA 552199 |||| || || | | | | | | |||| | ||||| || ||| | | || Sbjct 2252854 TCGAATCCCCAAGGTGC---AGAAGCTCGTTTCTGACTTCTTCAACGGAAAAGAGCTGAA 2252798 Query 552200 TGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCT 552259 | | | | || || ||||||||||||||||| ||||| || | || || || || || Sbjct 2252797 TCGATCTATCAACCCTGATGAGGCTGTTGCCTACGGTGCTGCCGTCCAGGCTGCCATCCT 2252738 Query 552260 TTCTGGACAAAC-TGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTAT 552318 |||||| | || | | ||| || ||||| | || | || ||| |||| || | Sbjct 2252737 TTCTGGTGACACTTCCTCTTCCACT-CAGGATATTCTGCTCCTTGACGTTGCTCCCCTTT 2252679 Query 552319 CTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTA 552378 ||||||| | || || | ||| ||| ||||||| || || ||| |||| | |||| Sbjct 2252678 CTCTTGGAATCGAGACTGCTGGCGGTGTTATGACCAAGCTCATCCCCCGAAACTCGACTA 2252619 Query 552379 TTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAA 552438 | || || || ||| || || || || | || || || ||| ||| | Sbjct 2252618 TCCCCACCAAGAAGTCTGAGACCTTCTCCACCTACGCTGACAACCAGCCTGGCGTTCTGA 2252559 Query 552439 TTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTTA 552498 |||| | ||||| || || || || || ||||| || ||||||| ||| Sbjct 2252558 TTCAGGTCTTTGAGGGTGAGCGAGCTCAGACCAAGGATAACAACATCCTTGGTAAGTTTG 2252499 Query 552499 ATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATA 552558 | | |||||||| || ||||||||||| || || || || ||||| || || || Sbjct 2252498 AGCTGTCCGGTATTCCCCCCGCTCCTCGTGGTGTTCCTCAGATCGAAGTCACCTTTGACG 2252439 Query 552559 TCGATGCCAATGGAATTTTGAATGT 552583 | |||||||| || ||| | || || Sbjct 2252438 TTGATGCCAACGGTATTCTCAACGT 2252414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029295629808430