Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12]
7 sequences; 20,547,992 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq6 100 2e-16
seq5 87.8 1e-12
>seq6
Length=4002965
Score = 100 bits (110), Expect = 2e-16
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| || | ||| || ||| ||| || || || ||||| ||||| || ||||
Sbjct 1337571 AGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGG 1337512
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| || | |||||||||||| || || |||||||| || |||| ||||| ||||||
Sbjct 1337511 CCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCC 1337452
Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728
||||| ||||| || || | | | || || | ||||||||| | ||
Sbjct 1337451 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTG 1337392
Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| || || || || | || || ||||||||||||||
Sbjct 1337391 ATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCAT 1337354
Score = 86.0 bits (94), Expect = 5e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| || | ||| || ||| ||| || || || ||||| || || ||| ||||
Sbjct 1219237 AGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGG 1219178
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
|||| || | |||||||||||| || || |||||||| || |||| ||| | ||||||
Sbjct 1219177 CCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATTCCCTCC 1219118
Query 48669 TTGTC 48673
|||||
Sbjct 1219117 TTGTC 1219113
>seq5
Length=4198534
Score = 87.8 bits (96), Expect = 1e-12
Identities = 140/195 (72%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGAC-TTCGATCGTCGTCCAA-CTGCTTACCGGCA 48632
||| || ||||| ||||| || || ||| ||||| | || || | ||||||||| ||
Sbjct 2277400 CTCCTTCTGAATGTTGTAGTCGGAAAGAAGTTCGACCATCCTCGGAGCTGCTTACCAGCG 2277341
Query 48633 AATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACA 48692
|| ||||||||||| || |||| ||||| ||||||||||| |||||| |||| |
Sbjct 2277340 AAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTTA-A 2277282
Query 48693 GAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT-TTTTCCCGTCAAAGTTTT 48751
| | | || || | ||| ||||| | | || || |||||| |||| ||| ||
Sbjct 2277281 TTGTCGATGGTGTCGGAAGACTCAACCTCGAAGG--ATGGTCTTTTCCAGTCAGAGTCTT 2277224
Query 48752 TACAAAAATCTGCAT 48766
|| |||||||||||
Sbjct 2277223 GACGAAAATCTGCAT 2277209
Score = 84.2 bits (92), Expect = 2e-11
Identities = 92/120 (77%), Gaps = 2/120 (2%)
Strand=Plus/Minus
Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622
||| || ||| ||| || ||||| ||||| ||||| ||| |||| | || || | |||
Sbjct 2277184 ATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAGA-AGAGTTCGGCCATCCTCGAGCTG 2277126
Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682
|||||| ||||| ||||||||||| || | || |||| | || |||||||| ||||||
Sbjct 2277125 CTTACCAGCAAAAATCAGTCGCTGCTGGTTCGGGGGATC-CCTTCCTTGTCCTGAATCTT 2277067
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380937567501261
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |