Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq5 150 1e-30 seq4 150 1e-30 seq1 150 1e-30 >seq5 Length=4198534 Score = 150 bits (166), Expect = 1e-30 Identities = 369/552 (67%), Gaps = 8/552 (1%) Strand=Plus/Plus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTG-TTTGGCAAAATGGTAA 474387 ||| | || || ||| | ||||| || ||| ||||| || ||| || || || | Sbjct 11722 GCAGTAGGAATCGATCTTGGAACCACATACTCCTGTGTGGCCCATTTCGCCAA-TGACAG 11780 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| ||||| || ||||||||||| || || ||||| || || || | ||| | ||||| Sbjct 11781 AGTCGAAATCATCGCCAATGACCAGGGAAACAGAACCACTCCCTCGTTTGTGGCCTTTAC 11840 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || ||||||| || ||||| |||||||| || | || ||||| || |||| || Sbjct 11841 CGACACTGAACGACTCATTGGTGATGCTGCCAAGAACCAGGCTGCCATGAACCCTGCAAA 11900 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 || | ||||| || || || ||||||| || || || || || | ||||| Sbjct 11901 CACAGTCTTTGACGCCAAGCGACTGATTGGCCGAAAATTCGACGACCCTGAGGTCCAGAA 11960 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC 474627 ||| || | || || ||| | || | | ||| || || | || || | Sbjct 11961 TGACGCCAAGCACTTCCCCTTCAAGATTATCGACAAGGCTGGAAAGCCCAACATCGAGGT 12020 Query 474628 --AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 ||| || | || ||||| || || | || ||| | || ||||| ||| | | Sbjct 12021 CGAATTCAAG--GGCGAAACCAAGGTCTTCACCCCCGAAGAGATCTCTTCCATGATCCTC 12078 Query 474686 GCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAAT 474744 |||| |||||| |||| || ||| ||| || ||| | | || | || || || || Sbjct 12079 ACCAAGATGAAAGAAACTGCTGAGGG-ATACCTCGGAACAAAGGTGAACGACGCTGTCAT 12137 Query 474745 TACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAAT 474804 ||| ||||| ||||| || ||||||||||| || || || || || || || || || Sbjct 12138 TACCGTTCCCGCATACTTCAATGATTCTCAGCGACAGGCCACCAAGGACGCAGGTCTTAT 12197 Query 474805 TGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 ||| ||||| |||||| | ||||| || || || || || ||||| |||| || || Sbjct 12198 TGCTGGTCTGAATGTTCAGAGAATTATCAACGAGCCTACCGCTGCCGCCATTGCCTACGG 12257 Query 474865 TCTTGATAAGAA 474876 ||| |||||||| Sbjct 12258 TCTCGATAAGAA 12269 Score = 150 bits (166), Expect = 1e-30 Identities = 369/552 (67%), Gaps = 8/552 (1%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTG-TTTGGCAAAATGGTAA 474387 ||| | || || ||| | ||||| || ||| ||||| || ||| || || || | Sbjct 4164750 GCAGTAGGAATCGATCTTGGAACCACATACTCCTGTGTGGCCCATTTCGCCAA-TGACAG 4164692 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| ||||| || ||||||||||| || || ||||| || || || | ||| | ||||| Sbjct 4164691 AGTCGAAATCATCGCCAATGACCAGGGAAACAGAACCACTCCCTCGTTTGTGGCCTTTAC 4164632 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || ||||||| || ||||| |||||||| || | || ||||| || |||| || Sbjct 4164631 CGACACTGAACGACTCATTGGTGATGCTGCCAAGAACCAGGCTGCCATGAACCCTGCAAA 4164572 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 || | ||||| || || || ||||||| || || || || || | ||||| Sbjct 4164571 CACAGTCTTTGACGCCAAGCGACTGATTGGCCGAAAATTCGACGACCCTGAGGTCCAGAA 4164512 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC 474627 ||| || | || || ||| | || | | ||| || || | || || | Sbjct 4164511 TGACGCCAAGCACTTCCCCTTCAAGATTATCGACAAGGCTGGAAAGCCCAACATCGAGGT 4164452 Query 474628 --AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 ||| || | || ||||| || || | || ||| | || ||||| ||| | | Sbjct 4164451 CGAATTCAAG--GGCGAAACCAAGGTCTTCACCCCCGAAGAGATCTCTTCCATGATCCTC 4164394 Query 474686 GCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAAT 474744 |||| |||||| |||| || ||| ||| || ||| | | || | || || || || Sbjct 4164393 ACCAAGATGAAAGAAACTGCTGAGGG-ATACCTCGGAACAAAGGTGAACGACGCTGTCAT 4164335 Query 474745 TACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAAT 474804 ||| ||||| ||||| || ||||||||||| || || || || || || || || || Sbjct 4164334 TACCGTTCCCGCATACTTCAATGATTCTCAGCGACAGGCCACCAAGGACGCAGGTCTTAT 4164275 Query 474805 TGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 ||| ||||| |||||| | ||||| || || || || || ||||| |||| || || Sbjct 4164274 TGCTGGTCTGAATGTTCAGAGAATTATCAACGAGCCTACCGCTGCCGCCATTGCCTACGG 4164215 Query 474865 TCTTGATAAGAA 474876 ||| |||||||| Sbjct 4164214 TCTCGATAAGAA 4164203 >seq4 Length=3629463 Score = 150 bits (166), Expect = 1e-30 Identities = 369/552 (67%), Gaps = 8/552 (1%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTG-TTTGGCAAAATGGTAA 474387 ||| | || || ||| | ||||| || ||| ||||| || ||| || || || | Sbjct 3625429 GCAGTAGGAATCGATCTTGGAACCACATACTCCTGTGTGGCCCATTTCGCCAA-TGACAG 3625371 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| ||||| || ||||||||||| || || ||||| || || || | ||| | ||||| Sbjct 3625370 AGTCGAAATCATCGCCAATGACCAGGGAAACAGAACCACTCCCTCGTTTGTGGCCTTTAC 3625311 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || ||||||| || ||||| |||||||| || | || ||||| || |||| || Sbjct 3625310 CGACACTGAACGACTCATTGGTGATGCTGCCAAGAACCAGGCTGCCATGAACCCTGCAAA 3625251 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 || | ||||| || || || ||||||| || || || || || | ||||| Sbjct 3625250 CACAGTCTTTGACGCCAAGCGACTGATTGGCCGAAAATTCGACGACCCTGAGGTCCAGAA 3625191 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC 474627 ||| || | || || ||| | || | | ||| || || | || || | Sbjct 3625190 TGACGCCAAGCACTTCCCCTTCAAGATTATCGACAAGGCTGGAAAGCCCAACATCGAGGT 3625131 Query 474628 --AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 ||| || | || ||||| || || | || ||| | || ||||| ||| | | Sbjct 3625130 CGAATTCAAG--GGCGAAACCAAGGTCTTCACCCCCGAAGAGATCTCTTCCATGATCCTC 3625073 Query 474686 GCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAAT 474744 |||| |||||| |||| || ||| ||| || ||| | | || | || || || || Sbjct 3625072 ACCAAGATGAAAGAAACTGCTGAGGG-ATACCTCGGAACAAAGGTGAACGACGCTGTCAT 3625014 Query 474745 TACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAAT 474804 ||| ||||| ||||| || ||||||||||| || || || || || || || || || Sbjct 3625013 TACCGTTCCCGCATACTTCAATGATTCTCAGCGACAGGCCACCAAGGACGCAGGTCTTAT 3624954 Query 474805 TGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 ||| ||||| |||||| | ||||| || || || || || ||||| |||| || || Sbjct 3624953 TGCTGGTCTGAATGTTCAGAGAATTATCAACGAGCCTACCGCTGCCGCCATTGCCTACGG 3624894 Query 474865 TCTTGATAAGAA 474876 ||| |||||||| Sbjct 3624893 TCTCGATAAGAA 3624882 >seq1 Length=2257857 Score = 150 bits (166), Expect = 1e-30 Identities = 369/552 (67%), Gaps = 8/552 (1%) Strand=Plus/Minus Query 474329 GCAATTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTG-TTTGGCAAAATGGTAA 474387 ||| | || || ||| | ||||| || ||| ||||| || ||| || || || | Sbjct 2253861 GCAGTAGGAATCGATCTTGGAACCACATACTCCTGTGTGGCCCATTTCGCCAA-TGACAG 2253803 Query 474388 AGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTAC 474447 ||| ||||| || ||||||||||| || || ||||| || || || | ||| | ||||| Sbjct 2253802 AGTCGAAATCATCGCCAATGACCAGGGAAACAGAACCACTCCCTCGTTTGTGGCCTTTAC 2253743 Query 474448 TGAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAA 474507 || ||||||| || ||||| |||||||| || | || ||||| || |||| || Sbjct 2253742 CGACACTGAACGACTCATTGGTGATGCTGCCAAGAACCAGGCTGCCATGAACCCTGCAAA 2253683 Query 474508 TACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATC 474567 || | ||||| || || || ||||||| || || || || || | ||||| Sbjct 2253682 CACAGTCTTTGACGCCAAGCGACTGATTGGCCGAAAATTCGACGACCCTGAGGTCCAGAA 2253623 Query 474568 TGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAAGC 474627 ||| || | || || ||| | || | | ||| || || | || || | Sbjct 2253622 TGACGCCAAGCACTTCCCCTTCAAGATTATCGACAAGGCTGGAAAGCCCAACATCGAGGT 2253563 Query 474628 --AATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTA 474685 ||| || | || ||||| || || | || ||| | || ||||| ||| | | Sbjct 2253562 CGAATTCAAG--GGCGAAACCAAGGTCTTCACCCCCGAAGAGATCTCTTCCATGATCCTC 2253505 Query 474686 GCCAAAATGAAACAAACCGC-GAGCTCATATCTTGGACAAGAAGTAACTGATGCAGTAAT 474744 |||| |||||| |||| || ||| ||| || ||| | | || | || || || || Sbjct 2253504 ACCAAGATGAAAGAAACTGCTGAGGG-ATACCTCGGAACAAAGGTGAACGACGCTGTCAT 2253446 Query 474745 TACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAAT 474804 ||| ||||| ||||| || ||||||||||| || || || || || || || || || Sbjct 2253445 TACCGTTCCCGCATACTTCAATGATTCTCAGCGACAGGCCACCAAGGACGCAGGTCTTAT 2253386 Query 474805 TGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 ||| ||||| |||||| | ||||| || || || || || ||||| |||| || || Sbjct 2253385 TGCTGGTCTGAATGTTCAGAGAATTATCAACGAGCCTACCGCTGCCGCCATTGCCTACGG 2253326 Query 474865 TCTTGATAAGAA 474876 ||| |||||||| Sbjct 2253325 TCTCGATAAGAA 2253314 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268178899736036