Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq2 199 5e-45 seq6 174 2e-37 seq4 147 3e-29 seq1 113 6e-19 seq5 107 2e-17 seq3 91.5 2e-12 >seq2 Length=3044971 Score = 199 bits (220), Expect = 5e-45 Identities = 244/326 (75%), Gaps = 13/326 (4%) Strand=Plus/Plus Query 869141 GCGACACATGCAGGGACGGCAAAGAGGGCACTATGCGAACCTTCGTCGCGACTGATCATT 869200 |||| | | ||||| | ||||||| || | ||| ||| ||||| || ||| | Sbjct 506377 GCGAGAAAAGCAGGCA-GGCAAAGT---CAGTGTGCAGACCCTCGTCTCGGGAGATGAGC 506432 Query 869201 TCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAG 869260 |||||| |||| |||||| |||||||| || |||||||||||||| ||||||| | | Sbjct 506433 TCGTTGGAGAAGGTGAGGCCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCG 506492 Query 869261 AAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAG 869320 ||| ||| ||||| |||||||||||||||||||||||| | ||||| ||||| ||||| Sbjct 506493 AAAGAGCCGGAGAAGAAGATGCCCTCGACGGCGGCAAAGGCAATGAGTCGCTCTCCAAAG 506552 Query 869321 GTGTCGAGGCCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGAC 869380 ||| || | || | | ||||||||| | |||||||||||||||||| | | | Sbjct 506553 GTG--GA-CTCTTCGTCGGAGATCCACTTGAGGGCCCAGTCGGCCTTTTTCTTGATGCAG 506609 Query 869381 GGCACCGTGTCGATGGCGCGAAAGAGGT-GGT--CCTTTTCGGCCGGGTCCTTGACATAG 869437 || | || ||||||||| || |||| ||| || || | |||||||||| || Sbjct 506610 GGGATGGTCTCGATGGCGTTGAACAGGTAGGTTCGCTCTTTG---GGGTCCTTGATGTAT 506666 Query 869438 GTGTCGATCAGGAGCGAATAGGTCTC 869463 ||||||||||| ||||| |||||||| Sbjct 506667 GTGTCGATCAGCAGCGAGTAGGTCTC 506692 Score = 132 bits (146), Expect = 6e-25 Identities = 202/287 (70%), Gaps = 3/287 (1%) Strand=Plus/Plus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 |||||||||||||| || ||||||||||||||| ||| | | |||| | | || Sbjct 506694 GAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGCCTGC 506753 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 ||||| ||| || | ||||||||||| ||||| |||||| ||| || || Sbjct 506754 ACCTCGCCGGAGAATCGCTCAACCAGGTTCTCGTTAACGATACCGTCGGAGGCAGCAAAG 506813 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGA---CACCCAGTGG 869809 || || || ||||| ||| ||| ||||| |||| | |||| | |||||| Sbjct 506814 AATGCGAGAACGTGGGAGATGAAGAACCGCTCATCGTTGTTGAGTCTGTTCTCCCAGTCA 506873 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 | |||| | || || | |||||| || ||||||| |||||||||||||| ||| Sbjct 506874 CCCATGTCCTTTCCAAGATCAATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCTTCTTG 506933 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCG 869916 ||||||| ||| | || ||||| |||| |||||||| ||||| || Sbjct 506934 TACATCTGCCAGATTTCGTGGTACTGGATGGGGAAGAGCACAAACCG 506980 Score = 114 bits (126), Expect = 2e-19 Identities = 172/242 (71%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||| ||| ||| ||| ||||||||||||||||||||| | || ||||| Sbjct 506097 GCCTTCTGGTAGTCGGACACTCGCTTCTCGAAAAAGTTGGTCTTGCCGGCCAGAGAGATG 506156 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||| ||||||| | || || ||| | ||||| | | Sbjct 506157 TTCTCCATGAAGTCGAAGGGGTTGGTGGAGTTATACACCTTGGAGTTACCGAGAGCAACT 506216 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 ||||| ||||| |||||||||||||||||||||||||| || ||||||||| || | Sbjct 506217 AGCAGACGGTCAGCGACAAACTCGATGTACTGGCACATCAGCTTGGCGTTCATACCAAGC 506276 Query 868871 AGCGCCAC-CGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGAT 868929 || |||| ||||| | || | | ||||| | |||||| | || |||||||| || Sbjct 506277 AG-ACCACAGGGCAGAGCGTCAGTAAGGAACTCCTGCTCGATGCCAACAGCCTCGACAAT 506335 Query 868930 GA 868931 || Sbjct 506336 GA 506337 >seq6 Length=4002965 Score = 174 bits (192), Expect = 2e-37 Identities = 332/489 (68%), Gaps = 15/489 (3%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 ||| || ||||| || || |||| |||| |||| || ||||||||||||| |||||||| Sbjct 3933901 CTGATCAACGTATCGGGCGGTGTTGTTATAGACACGCAGCATGGGCACGATACCGTTGGA 3933842 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 ||||| || || || | ||||| ||| | || || | ||||| | | || Sbjct 3933841 GGTTCCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCTCGGATGTTGTGGATAGACAGACC 3933782 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 ||| |||||||| |||||||| || || || || |||||| || ||||||||||| || Sbjct 3933781 GATACCGCCGGCAGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAGATGCCGTC 3933722 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 ||| |||||| ||||||||| || || || |||||||| | || || || | || || Sbjct 3933721 GATGGAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGAGGCTGGGGAGTTCC 3933662 Query 1630305 GGCGTTGAAGAGCGTGGGCGTCGCCGCGGTGAACAACTGCCGCGACATGGCGTCGTAGGT 1630364 ||||||| |||| ||||| | || ||||| ||| | | ||||| || |||||| Sbjct 3933661 GGCGTTGTAGAGAGTGGGGGAAGCGTGAGTGAAGTACTTCTGAGACATATAGTTGTAGGT 3933602 Query 1630365 GGCGAGCACGCGCGCCAGCGCATCGTCCACGTCGGCAAACCCATAGTGGCCGATGGCGAC 1630424 | | ||| | ||| || |||| || | | |||| | ||| Sbjct 3933601 ------CTCAATGGCCCGGGCAATGT---TGTCG------CCGTGGATACCGACAGAGAC 3933557 Query 1630425 GCGCATGAGCATGTACTGGGGCCGCTCGACGACGACGCCGCGCACCTTGGTCAGGTAGGA 1630484 ||||||| ||| | ||||| |||||| | || | ||| || |||||| | Sbjct 3933556 TCGCATGATCATCTGTTGGGGTCGCTCGGCAACAGCACCGTTGACTCGCAGCAGGTATGC 3933497 Query 1630485 CCGGCGCATGGTCATGAGGCCAAAGTAGGAAAAGGCAAAATCGCGGTCGTGGCGGATGGC 1630544 || || |||| ||| |||||||||| ||| || || ||||||| | | ||||| Sbjct 3933496 TCGCTCCAGGGTCTTGAAGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTAGAGAATGGC 3933437 Query 1630545 GGCGTCGAG 1630553 | ||| ||| Sbjct 3933436 GCCGTTGAG 3933428 >seq4 Length=3629463 Score = 147 bits (162), Expect = 3e-29 Identities = 264/386 (68%), Gaps = 0/386 (0%) Strand=Plus/Minus Query 18061 ATGAGCACATTCGGCAAGGTATTTAGGGTCACCACCTTTGGCGAGTCGCACGGGGCGGGC 18120 |||||||| ||||||| | | || | |||||||||| |||||||||||| | Sbjct 2223740 ATGAGCACTTTCGGCACGCTTTTCAAAGTCACCACCTACGGCGAGTCGCACTGCAAATCT 2223681 Query 18121 GTCGGCTGCATCATCGACGGCGTGCCGCCGTGCATGCCACTGGCCGAGGCCGACATCCAG 18180 || |||||||| | ||||| || ||||| | ||| || | ||| |||| || ||| Sbjct 2223680 GTGGGCTGCATTGTTGACGGAGTTCCGCCCGGAATGGATCTCGATGAGTCCGATATTCAG 2223621 Query 18181 CCTCAGTTGGATCGGCGCCGACCGGGCCAGGGCGCACTTTCCACGCCGCGCAACGAGCCC 18240 || ||| || || || |||| |||||| || || |||| || || ||||||| Sbjct 2223620 CCCCAGCTGACCCGTCGAAGACCTGGCCAGTCGGCTCTGACCACTCCTCGAAACGAGCGA 2223561 Query 18241 GATCGCGTCATCATCCAGTCGGGCACGGAGAACGGCCTCACGCTCGGCTCGCCCGTCGGC 18300 ||| || |||||| || || ||| ||||| || || || | ||| | | | Sbjct 2223560 GATGCGGTTGCTATCCAGAGTGGAACCGAGTACGGCAAGACTCTGGGTACCCCCATTGCC 2223501 Query 18301 CTCTTTGTGGCCAACCGCGACCAGCGGCCCGTCGACTATTCCGACATGTGCAAGGTGCCG 18360 | | || ||| |||||||| ||| |||||| || || ||| | | || Sbjct 2223500 ATGCTGGTTCAGAACAAGGACCAGCGACCCCACGACTACTCGGAGATGGACGACTACCCC 2223441 Query 18361 CGGCCCTCACACGCCGACTACACCTACATGGCCAAGTACGGCATCAAGGCGTCGTCGGGC 18420 || || || || ||||||||||||||| || |||||||| |||||||| || || || Sbjct 2223440 CGACCTTCTCATGCCGACTACACCTACCAGGAGAAGTACGGAATCAAGGCCTCTTCTGGA 2223381 Query 18421 GGAGGCCGGTCGTCTGCCCGCGAGAC 18446 || ||||| || ||||| || ||||| Sbjct 2223380 GGCGGCCGATCTTCTGCACGAGAGAC 2223355 Score = 95.1 bits (104), Expect = 1e-13 Identities = 85/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 19095 GGCCTCGGCGAGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCG 19154 || ||||||||||| || || |||||| | || ||| | ||||||||||||||| |||| Sbjct 2223056 GGTCTCGGCGAGCCCTGTTTCGACAAGCTGGAAGCCACTCTCGCCCACGCCATGATGTCC 2222997 Query 19155 ATCCCGGCCACCAAGGGATTCGAGATTGGCAGCGGGTTTGCGGGTGC 19201 ||||| ||||||||||| || ||| |||| || ||||| || || Sbjct 2222996 ATCCCCGCCACCAAGGGCTTTGAGTTTGGTTCTGGCTTTGCCGGAGC 2222950 Score = 89.7 bits (98), Expect = 6e-12 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 1630180 AAGCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATG 1630239 |||||||| || ||||| | |||||||| | || ||| ||||||||||||||||||| Sbjct 425423 AAGCCGATACCTCCGGCGGTTTTGGAGATTTGGGCACACGTTTTGAGCGTGTCGTAGATG 425482 Query 1630240 CCCTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGA 1630283 || ||||| ||||| || |||| |||| || || || ||||| Sbjct 425483 CCGTCGATGGAGTCTGCTGCCATGGCCACCAGGAAACAGGACGA 425526 >seq1 Length=2257857 Score = 113 bits (124), Expect = 6e-19 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || |||||| | || || |||| || ||||| ||||||||||| ||||| || | || Sbjct 1093085 CTGTTTGAGATTATTCTGACCGCAAATTACCTGGACATCAAGCCCCTGCTGGACGTGGGC 1093026 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 |||||| | |||||||||||||||||||||||| | ||||||||||| || ||||| Sbjct 1093025 TGCAAGACGGTGGCCAACATGATCAAGGGCAAGACCCCCGAGGAGATTCGACGAACCTTC 1092966 Query 1592288 AACAT 1592292 ||||| Sbjct 1092965 AACAT 1092961 >seq5 Length=4198534 Score = 107 bits (118), Expect = 2e-17 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || ||| | | || || || || |||||||||||||| || | || Sbjct 3138577 GCTTGGCGAGCTCACCGGGGAGAATGAGTCGGACAGCGGTCTGGATCTCTCGAGAAGTGA 3138636 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| |||| | || ||||| | |||||||||| ||| || || | | Sbjct 3138637 TGGTGGACTTCTTGGTGTAGGTGGCCAGCTTGGAGGCCTCGGTGGCGACTCGCTCAAAGA 3138696 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| |||||||||| ||||| | | ||||||| || ||| |||| Sbjct 3138697 TGTCGTTGACAAAGGAGTTCATGATAGACATGGCTCGGGTGGAGATACCAGTGTCAGGGT 3138756 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | |||||| ||||||||||||||| | || ||||| Sbjct 3138757 GGGTCTGCTTCAGCACCTTGTAGATGTAAGAAGAGTA 3138793 >seq3 Length=3366276 Score = 91.5 bits (100), Expect = 2e-12 Identities = 200/294 (68%), Gaps = 8/294 (3%) Strand=Plus/Minus Query 507581 CTCCAGATCGGGTGGTCGGTCGAGCGCCACCTGCGCGCGGGCGACGCCGTGGTGATGAAC 507640 || ||| ||| ||| ||| ||||| |||||| | ||| | ||| || | ||| Sbjct 2369656 CTGCAGTACGGCTGGAAGGTGGAGCGGCACCTGATGGACAACGATCCTGTGCTGTTCAAC 2369597 Query 507641 CGGCAGCCGTCGCTGCACATGGGCTCCATGCTCATGCACAAGGTGGTGCC---CATGCCC 507697 || ||||| |||||||| | |||||| | ||||| | | ||| ||||||| Sbjct 2369596 CGACAGCCCTCGCTGCATAAAATGTCCATGATG--GCACATCGAG-TGCGAGTCATGCCC 2369540 Query 507698 GGGCGCACCATGCGATTCAACCTGGCCGTCACGGGCACCTACAACGCCGACTTTGACGGC 507757 |||| | ||| |||||||| | || || | |||||||||| || || || || Sbjct 2369539 TACTCCACCTTTCGACTCAACCTGTCGGTAACATCCCCCTACAACGCTGATTTCGATGGT 2369480 Query 507758 GACGAGATGAACCTGCACGTGCCCCAGTCCGAGACGGCGCGCGCCGAGGTGACGCACACC 507817 ||||| |||||| |||| ||||| ||||||||| | || || ||| || |||| | Sbjct 2369479 GACGAAATGAACTTGCATGTGCCTCAGTCCGAGGAAACTCGAGCTGAGCTGTCGCAG-CT 2369421 Query 507818 ATG-AGCGTGTCGCTCAAGACCGTGTCGCCGCAGGCCAACAAGCCCATCATCGG 507870 || | || | | ||| ||||| || ||| ||||||||||| |||| || Sbjct 2369420 GTGCATGGTTCCTTTGCAGATTGTGTCTCCCCAGTCCAACAAGCCCGTCATGGG 2369367 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107138625547219