Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq2 118 1e-21 seq6 102 8e-17 >seq2 Length=3044971 Score = 118 bits (130), Expect = 1e-21 Identities = 325/492 (66%), Gaps = 11/492 (2%) Strand=Plus/Minus Query 46773 AAAAAGGCCCAGTGGGCCATGAAGTGGATCGAGAGCGAGACCGCCACGCTGGCCGAGCGC 46832 ||||||||| | |||||| | ||||||||| ||| |||| | | ||||| Sbjct 506599 AAAAAGGCCGACTGGGCCCTCAAGTGGATCTCCGACGAAGAGTCCACCTTTGGAGAGCGA 506540 Query 46833 ATGGTGGCATTCGCGATAGTCGAAGGCGTGtttttttCGGGCAGTTTTGCCGCCATTTTT 46892 | | || || || ||||| ||| | || || || ||| ||| ||| |||| || Sbjct 506539 CTCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTC 506480 Query 46893 TACATTAAAACCAAAGGCATAATGCCGGGCCTGACGTTCAGTAACGAGTTGATCTCGCGC 46952 | | || | ||| | ||||| ||||| || ||| |||||| | ||||| || Sbjct 506479 TGGCTCAAGAAGCGAGGTCTCATGCCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGA 506420 Query 46953 GACGAAGGACTACACACGGACTTTGCGTGTCTCTATTACAAGACGCGCGTGAATGAGAAA 47012 ||||| || || ||||| |||||||| || || || | ||| | | |||||| Sbjct 506419 GACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTTTTCT---CGCACCT---TGAGAAC 506366 Query 47013 TTAAACTCGGACACGATCCT-GAGCATGT--TTAGGGAGGCGGTGAGCATCGAAAAGGAG 47069 | ||| | | ||| | ||| | || || ||||| || ||||||| ||||| Sbjct 506365 CGACCCTCAAAGAAGATTGTTGAGGACGTCATTGTCGAGGCTGTTGGCATCGAGCAGGAG 506306 Query 47070 TTTTTTACTGCGGCGCTGCCC-GTCGCCTTGCTGGGCATGAACGCACAGTCTATGTGCGA 47128 || |||||| || |||||| || | || ||| || |||||||| || |||||| | Sbjct 506305 TTCCTTACTGACGCTCTGCCCTGTGGTCT-GCTTGGTATGAACGCCAAGCTGATGTGCCA 506247 Query 47129 ATATATTGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGACAACCGAAATATTTTAA 47188 || || |||||||| || || |||||| | || ||||| | | || | ||| Sbjct 506246 GTACATCGAGTTTGTCGCTGACCGTCTGCTAGTTGCTCTCGGTAACTCCAAGGTGTATAA 506187 Query 47189 TGCTCGTAATCCGTTTGAGTTTATGAACAACATTTCGCTCGAGGGCAAAACCAATTTTTT 47248 | || || || || || ||| | ||||| || || | ||||| ||||| ||||| Sbjct 506186 CTCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGCCGGCAAGACCAACTTTTT 506127 Query 47249 CGAGAAACGAGT 47260 |||||| ||||| Sbjct 506126 CGAGAAGCGAGT 506115 >seq6 Length=4002965 Score = 102 bits (112), Expect = 8e-17 Identities = 963/1539 (63%), Gaps = 59/1539 (4%) Strand=Plus/Minus Query 146893 TTGACCACTTGAAACTCGCCCGCCAGCACACGTCTGAGA-TACACATTGCTAGTGAAAGG 146951 ||||| | || || || || || || || |||| |||| || | ||| |||| | || Sbjct 3934959 TTGACAATCTGGAATTCACCAGCAAGAACTCGTC-GAGAGTAAATGTTGGAAGTGTAGGG 3934901 Query 146952 CTCAAAAGACTCATTATTGCCTAATATTTGGGCCGTGGTTGCGGTAGGCATGTACGCCAC 147011 ||| || ||||||| || | || |||| |||| || || |||||| || || Sbjct 3934900 CTCGAAGCACTCATTGAAACCAAGAATCTGGGAAGTGGAGGCAGTGGGCATGGGAGCGAC 3934841 Query 147012 CAACAATGAATTTCGCAGACC-GTACGCACGGATGTTGTCCTTCAAAGTTTGCCAGTCCC 147070 ||||| || ||||||| ||| || || | || ||| |||| | | | ||| |||| Sbjct 3934840 CAACAGCGAGTTTCGCATACCAGTCTTCATG-ATCTTGGCCTTGAGATCGTCCCACTCCC 3934782 Query 147071 ACATCGACGAGGGCGTCACGTTCCACATGTCGTACTGGAG--CACTCCTCGACTGGCGGG 147128 ||| | || || ||||||||||| | ||| ||||||| ||| | | || ||| || Sbjct 3934781 ACAGCTCGGAAGGAGTCACGTTCCAGAGATCGAACTGGAGGTCACCCTTGGA--GGCAGG 3934724 Query 147129 ACTGCCAGCGAACGTAGTGTAGCTTCCGTCGCGCTGCGCCAATTCACAGCTTGCCTCGAG 147188 ||| ||| || |||| ||||| | |||| || | || |||| Sbjct 3934723 GGAGCCCTGGAAGGTCTCGTAGGCACCGTCCTCAAGAGCCATCTCGTAAGAGGCTTCGAC 3934664 Query 147189 CGCTCCATAGTATATGGTTTCGGCGATTTGTTTGTTTAGGACGGTCGCTTCTTCGCTCTC 147248 ||||| | ||| ||||| ||| ||| || |||| || | || || ||| ||| Sbjct 3934663 AGCTCCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCCTCGGACTC 3934604 Query 147249 GTAAGGCATACGCAGAAGCACAAAGGCATCGGCCAAACCCTGGATACCGACGCCGATAGG 147308 | || | || ||| || |||| ||||||| |||||||| ||| | | || || Sbjct 3934603 AAATGGGAGTCGTAGAGCCATGAAGGTGTCGGCCAGACCCTGGACACCCAGAGCAATGGG 3934544 Query 147309 TCGATGCTTTTCGT-TGCTGCGCTTCGCG--CTCGCT-ATGGGATAGTGGTTGCGATCAA 147364 ||| || ||| || | |||| | |||| | || |||| ||| || || | Sbjct 3934543 TCGGTG----TCGCATGTTAGACTTCTTGGCCTCGGGGACCGGGTAGTAGTTTCGGTCGA 3934488 Query 147365 TAATCTTGTTGAGGTTACGCACTACAACTTTAGTTATTGTTTTG-AGTTTCTCGAAATCA 147423 | || ||||||||| ||||| | || || | || || || || |||| ||| || Sbjct 3934487 TGATAGCGTTGAGGTTTCGCACAATGACCTTGGCAAT-GTCGTGCAGCTTCTTGAAGTCG 3934429 Query 147424 TAA---------GTCCCGTCTTCGACACGTACGCATTG-GTTCACGGCGATAGACGCCAG 147473 || || ||||| ||| ||| | | | || ||||| || ||||| Sbjct 3934428 TAGAACGAGTTGGTGTCGTCT-CGA---GTAACAAAAGTGGGCAGAGCGATGGAAGCCAG 3934373 Query 147474 ATTGCAGACGGCCGTCTCTTC-GGCGTCGCTGTACTGCACGATTTCGGCGCACAGGTTGC 147532 |||||||| || ||| || || | | ||||| || || || ||||||||| Sbjct 3934372 GTTGCAGACAGCGACCTCATCAGGAGAAGA-GTACTCTACAATCTCACAGCACAGGTTAG 3934314 Query 147533 TGCATTTTATGACTCCCAAATTTTGCTGATTGCTTTTCCGATTGCACGCGTCTTTGAAGA 147592 | || || ||| | || | ||| ||| || || ||||| | ||| ||| | | Sbjct 3934313 AAGACTTAATTGTTCCGAGGTTCTTCTGGTTGGACTTTCGGTTGCAGGAGTCCTTGTACA 3934254 Query 147593 GCATGTACGGTCCGCCGGTCTCGA-CTTGCGTTTCAACGATAAACCTATG------CAGG 147645 ||||| | || ||||| |||| || || | ||| || | || ||| Sbjct 3934253 GCATGAAGGGGTTGCCGGACTCGGTCTGGCAGT----CGAGAA---TGTGGTACCACAGC 3934201 Query 147646 TCCTGCGCTCGCACCCGCTGCCGATAGCGGCCCTCGTTTTCGTACCGCTCGTACAACCGC 147705 | ||| || | | | || |||||||| || |||||| ||||||||| | || Sbjct 3934200 TTCTGGGCAGGGATGGTTCGTCGGCCTCGGCCCTCCTTCTCGTACTGCTCGTACAGCTGC 3934141 Query 147706 TCAAACTCGTCGCCGTAGCAATCGGCAAGGCCGGGACACTGATGCGGACACATCAGCGAC 147765 | |||||| || || ||| ||| |||| ||||| |||| | || |||||||| | | Sbjct 3934140 TTAAACTCATCACCATAGACGTCGTCAAGACCGGGGCACTCGTTGGGGCACATCAGGGTC 3934081 Query 147766 CACATGTCGTCCGCGTTAACGCGTCGCATAAACAGATCCGGCACCCACAGCGCGTACATA 147825 || ||| | | || || ||| ||||| || || | |||||| || | Sbjct 3934080 CATTCAGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGATCCACAGAGCCAGGAAC 3934021 Query 147826 AGATCGCGCGCTTTGCAATC-CTCGGCGCCCATGTTGCGTTTCAAATTA--AGCACGCTA 147882 || || || ||| |||| || || || | | || | | || || | | Sbjct 3934020 AGGTCTCGGGCTCG--AATCTCTTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGA 3933963 Query 147883 TAGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGCGCACCTTTACGCTTT---CCG 147939 |||| ||| |||||||||| |||| ||| | || | ||||| ||||| || Sbjct 3933962 -AGATATCGTCGTGCCAGGGCTCAAGGTACATTGCAAAGGCACCAGGTCGCTTGTTGCCT 3933904 Query 147940 CCCTGGTCGACATGGCGCACCATGTTGTTAAACACGCGCACCATGGGTTCCAGGCCGCTC 147999 ||||| || || | || | |||||||| | || |||| |||||| | | ||| | Sbjct 3933903 CCCTGATCAACGTATCGGGCGGTGTTGTTATAGACACGCAGCATGGGCACGATACCGTTG 3933844 Query 148000 GCAGTGCCGTTGGTGGAATTGATCTTGCTGCCGCGGGCTCGCACTTCGTGCACGTTAACG 148059 | || ||||| || | || | | ||| ||||| | | ||| | | Sbjct 3933843 GAGGTTCCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCTCGGATGTTGTGGATAGACAGA 3933784 Query 148060 CCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAATCGCCCAATGTCGTGTAGATGCCG 148119 || || |||||| | |||| || || ||| || | || |||||||||| Sbjct 3933783 CCGATACCGCCGGCAGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAGATGCCG 3933724 Query 148120 TCGATGCTGTCGTTTTTGACGCCAAGCAAAAAACACGAACACATTTGCGGAATCCGCGTT 148179 |||||| ||||| || | | | | |||||||| |||| || || | ||| Sbjct 3933723 TCGATGGAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGAGGCTGGGGAGTT 3933664 Query 148180 CCCGCCGAGAAAAGGGTGGGACTCGCGTGCGTAAACAATTTTTGACTCATCATGCGATAC 148239 || || | | || ||||| ||||| || || | || ||| ||| | || Sbjct 3933663 CCGGCGTTGTAGAGAGTGGGGGAAGCGTGAGTGAAGTACTTCTGAGACATATAGTTGTAG 3933604 Query 148240 GTCTCAATAGCGTCTTCGATGTCGTCGCCGTGAATGCCCAGCGCGACGCGCATGAGCATG 148299 |||||||| || | |||| ||||||||| || || | | ||| ||||||| ||| Sbjct 3933603 GTCTCAATGGCCCGGGCAATGTTGTCGCCGTGGATACCGACAGAGACTCGCATGATCATC 3933544 Query 148300 TGCTGTGGTCGTTCGGCAACTTGATTGTTGATCTTG-AGAAGATATCCATTTTCGAGGGT 148358 || || ||||| |||||||| | ||||| || | || || ||| | || ||||| Sbjct 3933543 TGTTGGGGTCGCTCGGCAACAGCACCGTTGA-CTCGCAGCAGGTATGCTCGCTCCAGGGT 3933485 Query 148359 TTTGTAACCAAAGTACTTGTAATCAAAATCTAGCTCGTA 148397 ||| | |||||||| ||||| || ||| | ||||| Sbjct 3933484 CTTGAAGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTA 3933446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476611158296520