Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2 271 1e-66 seq6 145 1e-28 seq5 96.9 5e-14 >seq2 Length=3044971 Score = 271 bits (300), Expect = 1e-66 Identities = 408/568 (72%), Gaps = 14/568 (2%) Strand=Plus/Minus Query 1455715 CGAGCCGCTGCTGCGCGATAACC--CGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAG 1455772 |||||| ||||| || |||| ||| || ||||| || |||||||||| ||||| Sbjct 507008 CGAGCCTCTGCTCAAGGAGAACCATCGA--CGGTTTGTGCTCTTCCCCATCCAGTACCAC 506951 Query 1455773 CGGATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGA 1455832 || ||| | |||||| || |||||||||||||| || ||||| || |||||| | || Sbjct 506950 GAAATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACAGCTGAGGAGATTGA 506892 Query 1455833 CCTCGGCGCCGACACGGTCCACTGGGTGTCG---CTGAGCGACGACGAGCGCCATTTCAT 1455889 || || |||| || |||||| | || | | |||| ||||| ||||| Sbjct 506891 TCTTGGAAAGGACATGGGTGACTGGGAGAACAGACTCAACAACGATGAGCGGTTCTTCAT 506832 Query 1455890 CAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCG 1455949 | ||||| ||||| || ||| || ||| ||| || ||||| ||||||||||| | Sbjct 506831 CTCCCACGTTCTCGCATTCTTT-GCTGCCTCCGACGGTATCGTTAACGAGAACCTGGTTG 506773 Query 1455950 GCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCG 1456009 || || ||||| || || ||||| | || ||||| ||||||||| Sbjct 506772 AGCGATTCTCCGGCGAGGTGCAGGCCCCCGAGGCCAAGTGCTTCTACGGCTTCCAGATCA 506713 Query 1456010 CCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACC 1456069 || || ||||||||||| || ||||||||||| ||||||||||| ||| ||||||||| Sbjct 506712 TGATGGAGAACATCCACTCCGAGACCTACTCGCTGCTGATCGACACATACATCAAGGACC 506653 Query 1456070 CGGTCGAGAAGGACC-ACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAG 1456128 | ||| | ||| |||| || ||||||||| || | || | | | ||||||| Sbjct 506652 CCAAAGAGC-GAACCTACCTGTTCAACGCCATCGAGACCATCCCCTGCATCAAGAAAAAG 506594 Query 1456129 GCCGACTGGGCGATGAAGTGGATCAACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCG 1456188 ||||||||||| | ||||||||| | | || | || || ||||| ||||| ||| Sbjct 506593 GCCGACTGGGCCCTCAAGTGGATCTCCGACGA-AGAGTCCAC-CTTTGGAGAGCGACTCA 506536 Query 1456189 TCGGCTTTGCCG-CGTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGC 1456247 | | |||||||| ||||||||||||||| ||||| ||| |||| | ||||||| |||| Sbjct 506535 TTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTGGC 506476 Query 1456248 TCAAGAAGCGCGGCCTCATGCCCGGTCT 1456275 |||||||||| || |||||||| || || Sbjct 506475 TCAAGAAGCGAGGTCTCATGCCTGGCCT 506448 >seq6 Length=4002965 Score = 145 bits (160), Expect = 1e-28 Identities = 207/289 (72%), Gaps = 2/289 (1%) Strand=Plus/Plus Query 259895 ATGTCGCAGCAGTTGTTCACCTCA-GCGACGCCCACGCTCTTTAATGCCGGCACGCCGCG 259953 ||||| ||| ||| ||||| ||| || | ||||| |||| || ||||| || || | Sbjct 3933614 ATGTCTCAGAAGTACTTCAC-TCACGCTTCCCCCACTCTCTACAACGCCGGAACTCCCCA 3933672 Query 259954 CCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTA 260013 || |||| |||||||| || || | ||||||||| ||| || ||||| |||||||| Sbjct 3933673 GCCTCAGATGTCGTCGTGTTTCCTTGTCAACATGAAGGACGACTCCATCGACGGCATCTA 3933732 Query 260014 TGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGC 260073 || || ||||| || || || || |||||| | |||||||| |||||| | | Sbjct 3933733 CGATACCCTCAAAACCTGTGCTCTGATTTCCAAGTCTGCCGGCGGTATCGGTCTGTCTAT 3933792 Query 260074 ACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCT 260133 ||||| | || || | ||| ||||| | || || || ||||| |||||||| | Sbjct 3933793 CCACAACATCCGAGCTACTGGCTCCTACATTGCTGGAACTAACGGAACCTCCAACGGTAT 3933852 Query 260134 TGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACCAG 260182 ||||||||||| || || | |||| |||| || || ||||| || ||| Sbjct 3933853 CGTGCCCATGCTGCGTGTCTATAACAACACCGCCCGATACGTTGATCAG 3933901 >seq5 Length=4198534 Score = 96.9 bits (106), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 6/228 (3%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | |||||||||||||| |||||| ||||| || | | ||| Sbjct 3138793 TACTCTTCTTACATCTACAAGGTGCTGAAGCAGACCCACCCTGACACTGGT-----ATC- 3138740 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 |||| | ||||||| ||||||||||| |||||||||||||| | || || ||| | Sbjct 3138739 TCCACCCGAGCCATGTCTATCATGAACTCCTTTGTCAACGACATCTTTGAGCGAGTCGCC 3138680 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 ||||||||| ||||| || || |||| ||| ||| | || |||||| Sbjct 3138679 ACCGAGGCCTCCAAGCTGGCCACCTACACCAAGAAGTCCACCATCACTTCTCGAGAGATC 3138620 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCC 725126 |||||||| || || || || | | ||| || || |||| ||||||| Sbjct 3138619 CAGACCGCTGTCCGACTCATTCTCCCCGGTGAGCTCGCCAAGCACGCC 3138572 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177810524837134