Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq6 118 1e-21 seq5 87.8 2e-12 >seq6 Length=4002965 Score = 118 bits (130), Expect = 1e-21 Identities = 144/194 (74%), Gaps = 2/194 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | |||||| |||| || ||||||||||| || || Sbjct 1337545 CTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAA 1337486 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||||| |||| | |||||||||| |||||| ||| | || Sbjct 1337485 GATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 1337427 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | |||||| || |||||||| | ||||| || ||||| || | || || | Sbjct 1337426 TGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGA 1337367 Query 35724 CAAATATCTGCATT 35737 |||| ||||||||| Sbjct 1337366 CAAAAATCTGCATT 1337353 Score = 96.9 bits (106), Expect = 3e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| |||| | ||||| |||| || ||||||||||| || || Sbjct 1219211 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAA 1219152 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||||| || | | |||||||||| |||||| ||| | || Sbjct 1219151 GATAAGTCGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 1219093 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| || |||||||| | ||||| || || || || | || || | Sbjct 1219092 TGTCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGA 1219033 Query 35724 CAAATATCTGCA 35735 |||| || |||| Sbjct 1219032 CAAAGATTTGCA 1219021 >seq5 Length=4198534 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/191 (72%), Gaps = 5/191 (3%) Strand=Plus/Minus Query 35548 CTTTTGAATGTTGTAATCGGCCAAG-GTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606 ||| |||||||| || || | ||| ||| | | || || ||||||||||| || || | Sbjct 2276735 CTTCTGAATGTTTTAGTCCGGAAAGAGTTGGACCATCCTCGAGCTGCTTACCAGCGAAAA 2276676 Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666 ||| ||||||||||||| |||| |||||||||| ||| || ||| | | ||| Sbjct 2276675 TCAGTCGCTGCTGGTCCGGGGGAA--TCCTCCTTGTCC-TGAATCTTGACTTGACAATTG 2276619 Query 35667 -CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | |||||| || || ||||| | ||||| || || || |||| ||| || || Sbjct 2276618 TCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACG 2276559 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 2276558 AAAATCTGCAT 2276548 Score = 87.8 bits (96), Expect = 2e-12 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCA-AGGTTCGCTCGTCGTCC-AGCTGCTTACCCGCA 35602 |||||| ||||||||||| |||| | | ||||| | || || ||||||||||| || Sbjct 2277400 CTCCTTCTGAATGTTGTAGTCGGAAAGAAGTTCGACCATCCTCGGAGCTGCTTACCAGCG 2277341 Query 35603 AATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGA 35662 || |||| ||||||||||||| |||| | |||||||||| ||||| ||| | | Sbjct 2277340 AAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTTA-A 2277282 Query 35663 GTTGCCACCGTGTCGCTCGATTCCACCTCCACCG-TGATCGTTTTACCCGTCAAAGTTTT 35721 | | | |||||| || || ||||| | | || || ||| || |||| ||| || Sbjct 2277281 TTGTCGATGGTGTCGGAAGACTCAACCTCGAAGGATGGTC--TTTTCCAGTCAGAGTCTT 2277224 Query 35722 CACAAATATCTGCAT 35736 || || |||||||| Sbjct 2277223 GACGAAAATCTGCAT 2277209 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/188 (72%), Gaps = 11/188 (6%) Strand=Plus/Minus Query 35550 TTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCA 35609 ||||||||||||| |||| || ||||| | || || ||||||||||| || || |||| Sbjct 2276951 TTTGAATGTTGTAGTCGG--AAAGTTCGACCATCCTCGAGCTGCTTACCAGCGAAAATCA 2276894 Query 35610 ACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCA 35669 |||||||||||| |||| ||| |||||||| ||| || ||| || | | | Sbjct 2276893 ---GCTGCTGGTCCGGGGGAATCCTC-CCTTGTCC-TGAATCTTGACTT--GATTGTCGA 2276841 Query 35670 CCGTGTCGCTCGATTCCACCTCCACCG-TGATCGTTTTACCCGTCAAAGTTTTCACAAAT 35728 |||||| || || ||||| | | |||| ||||| || |||| ||| || || || Sbjct 2276840 TGGTGTCGGAAGACTCAACCTCGAGAGTTGATGGTTTTTCCAGTCAGAGTCTTGACGAAA 2276781 Query 35729 ATCTGCAT 35736 || ||||| Sbjct 2276780 AT-TGCAT 2276774 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793560555560