Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12]
7 sequences; 20,547,992 total letters
Query= NC_026511.1
Length=140913
Score E
Sequences producing significant alignments: (Bits) Value
seq6 118 1e-21
seq5 87.8 2e-12
>seq6
Length=4002965
Score = 118 bits (130), Expect = 1e-21
Identities = 144/194 (74%), Gaps = 2/194 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| || | | |||||| |||| || ||||||||||| || ||
Sbjct 1337545 CTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAA 1337486
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||||||||||| |||| | |||||||||| |||||| ||| | ||
Sbjct 1337485 GATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 1337427
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | |||||| || |||||||| | ||||| || ||||| || | || || |
Sbjct 1337426 TGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGA 1337367
Query 35724 CAAATATCTGCATT 35737
|||| |||||||||
Sbjct 1337366 CAAAAATCTGCATT 1337353
Score = 96.9 bits (106), Expect = 3e-15
Identities = 138/192 (72%), Gaps = 2/192 (1%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604
|||||| || |||||||| |||| | ||||| |||| || ||||||||||| || ||
Sbjct 1219211 CTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAA 1219152
Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664
|| | ||||||||||||| || | | |||||||||| |||||| ||| | ||
Sbjct 1219151 GATAAGTCGCTGCTGGTCCGGGGGGATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGT 1219093
Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723
|| | | ||||| || |||||||| | ||||| || || || || | || || |
Sbjct 1219092 TGTCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGA 1219033
Query 35724 CAAATATCTGCA 35735
|||| || ||||
Sbjct 1219032 CAAAGATTTGCA 1219021
>seq5
Length=4198534
Score = 87.8 bits (96), Expect = 2e-12
Identities = 137/191 (72%), Gaps = 5/191 (3%)
Strand=Plus/Minus
Query 35548 CTTTTGAATGTTGTAATCGGCCAAG-GTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATA 35606
||| |||||||| || || | ||| ||| | | || || ||||||||||| || || |
Sbjct 2276735 CTTCTGAATGTTTTAGTCCGGAAAGAGTTGGACCATCCTCGAGCTGCTTACCAGCGAAAA 2276676
Query 35607 TCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG 35666
||| ||||||||||||| |||| |||||||||| ||| || ||| | | |||
Sbjct 2276675 TCAGTCGCTGCTGGTCCGGGGGAA--TCCTCCTTGTCC-TGAATCTTGACTTGACAATTG 2276619
Query 35667 -CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725
| | |||||| || || ||||| | ||||| || || || |||| ||| || ||
Sbjct 2276618 TCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACG 2276559
Query 35726 AATATCTGCAT 35736
|| ||||||||
Sbjct 2276558 AAAATCTGCAT 2276548
Score = 87.8 bits (96), Expect = 2e-12
Identities = 140/195 (72%), Gaps = 6/195 (3%)
Strand=Plus/Minus
Query 35545 CTCCTTTTGAATGTTGTAATCGGCCA-AGGTTCGCTCGTCGTCC-AGCTGCTTACCCGCA 35602
|||||| ||||||||||| |||| | | ||||| | || || ||||||||||| ||
Sbjct 2277400 CTCCTTCTGAATGTTGTAGTCGGAAAGAAGTTCGACCATCCTCGGAGCTGCTTACCAGCG 2277341
Query 35603 AATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGA 35662
|| |||| ||||||||||||| |||| | |||||||||| ||||| ||| | |
Sbjct 2277340 AAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTTA-A 2277282
Query 35663 GTTGCCACCGTGTCGCTCGATTCCACCTCCACCG-TGATCGTTTTACCCGTCAAAGTTTT 35721
| | | |||||| || || ||||| | | || || ||| || |||| ||| ||
Sbjct 2277281 TTGTCGATGGTGTCGGAAGACTCAACCTCGAAGGATGGTC--TTTTCCAGTCAGAGTCTT 2277224
Query 35722 CACAAATATCTGCAT 35736
|| || ||||||||
Sbjct 2277223 GACGAAAATCTGCAT 2277209
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/188 (72%), Gaps = 11/188 (6%)
Strand=Plus/Minus
Query 35550 TTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCA 35609
||||||||||||| |||| || ||||| | || || ||||||||||| || || ||||
Sbjct 2276951 TTTGAATGTTGTAGTCGG--AAAGTTCGACCATCCTCGAGCTGCTTACCAGCGAAAATCA 2276894
Query 35610 ACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCA 35669
|||||||||||| |||| ||| |||||||| ||| || ||| || | | |
Sbjct 2276893 ---GCTGCTGGTCCGGGGGAATCCTC-CCTTGTCC-TGAATCTTGACTT--GATTGTCGA 2276841
Query 35670 CCGTGTCGCTCGATTCCACCTCCACCG-TGATCGTTTTACCCGTCAAAGTTTTCACAAAT 35728
|||||| || || ||||| | | |||| ||||| || |||| ||| || || ||
Sbjct 2276840 TGGTGTCGGAAGACTCAACCTCGAGAGTTGATGGTTTTTCCAGTCAGAGTCTTGACGAAA 2276781
Query 35729 ATCTGCAT 35736
|| |||||
Sbjct 2276780 AT-TGCAT 2276774
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 450793560555560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |