Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12]
7 sequences; 20,547,992 total letters
Query= NC_026922.1
Length=157977
Score E
Sequences producing significant alignments: (Bits) Value
seq6 125 7e-24
seq5 93.3 4e-14
>seq6
Length=4002965
Score = 125 bits (138), Expect = 7e-24
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| |||| ||||||| ||||| || || ||||| ||||| || ||||||||||| |
Sbjct 1337580 CCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1337521
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| ||| | ||| |||||||| || || || || || | |||||||| || || ||
Sbjct 1337520 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 1337461
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || || || || || ||||| ||| | |||||||| || |||||
Sbjct 1337460 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1337401
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTT 134715
||||| || || || |||||||| | || || || ||||| |||||||
Sbjct 1337400 TCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1337352
Score = 114 bits (126), Expect = 1e-20
Identities = 161/226 (71%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
||||||| |||||||| ||||| || || ||||| ||||| || |||||||||||| |
Sbjct 1219246 CCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 1219187
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || | ||| |||||||| || || || || || | |||||||| || || ||
Sbjct 1219186 AGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 1219127
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666
|| || || || || || || || ||||| ||| | ||||| || || |||||
Sbjct 1219126 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACC 1219067
Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCA 134712
||||| || || || || || || | || || || || |||||||
Sbjct 1219066 TCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1219021
>seq5
Length=4198534
Score = 93.3 bits (102), Expect = 4e-14
Identities = 162/228 (71%), Gaps = 11/228 (5%)
Strand=Plus/Minus
Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546
|| |||| |||||| | ||||| || || ||||| ||||| |||||||||||||| |
Sbjct 2277207 CCACCTCGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTC-AGA 2277149
Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606
| || | || |||||||| || || |||||||||| |||||||| | || ||
Sbjct 2277148 AGAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTTCGG-GGG 2277090
Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCA-ATGTGTCGGACGATTCCAC 134665
|| ||||| || || ||||| || ||||| ||| | |||||| || || ||
Sbjct 2277089 ATCCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGGTGTCGAAC---TCAAC 2277033
Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
|||||||| ||| ||| | | | | || || |||||||| |||||
Sbjct 2277032 -TCGAGAGTGATG--TTTCCAG--TCAGGTCTTGACGAAAATCTGCAT 2276990
Score = 89.7 bits (98), Expect = 5e-13
Identities = 138/191 (72%), Gaps = 17/191 (9%)
Strand=Plus/Minus
Query 134527 TTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCA 134586
||||||||||||||||| || || || || |||||||| || || || |||||||
Sbjct 2276951 TTTGAATGTTGTAGTCGGAAA--GTTCGACCATCCTCGAGCTGCTTACCAGCGAAAATCA 2276894
Query 134587 AACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT---TTGTTTGACCGCGT 134643
||||||| || || || || ||| | || || ||||| || ||| || ||
Sbjct 2276893 ---GCTGCTGGTCCGGGGGAAT-CCTCCCTTGTCCTGAATCTTGACTTGATT------GT 2276844
Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAG-TAATGGTTTTACCGGTTAAAGTTTTAACG 134702
| | |||||||| || || || ||||||| | |||||||| || || | ||| || |||
Sbjct 2276843 CGATGGTGTCGGAAGACTCAACCTCGAGAGTTGATGGTTTTTCCAGTCAGAGTCTTGACG 2276784
Query 134703 AAAATTTGCAT 134713
|||| ||||||
Sbjct 2276783 AAAA-TTGCAT 2276774
Score = 89.7 bits (98), Expect = 5e-13
Identities = 162/227 (71%), Gaps = 9/227 (4%)
Strand=Plus/Minus
Query 134490 CCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAA-C 134548
|||| |||||| ||| ||| || | ||||| ||||| ||||||||||||||| ||
Sbjct 2277429 CCTCGGAGTCGGAAC--GAGATGG-GAGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGA 2277373
Query 134549 GGTGTGAGAGTCGTC-GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTA 134607
|| || || || |||||| || || || ||||||| |||||||| || || || |
Sbjct 2277372 AGTTCGACCATCCTCGGAGCTGCTTACCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAA 2277313
Query 134608 TGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGT 134667
| || || || || ||||| || || | ||| | |||||||| || || || |
Sbjct 2277312 TTCCCTCCTTGTCCTGAATCTTGGACTTTA-ATTGTCGATGGTGTCGGAAGACTCAACCT 2277254
Query 134668 CGAGAGTAATGGT-TTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713
||| || ||||| ||| || || | ||| || |||||||| |||||
Sbjct 2277253 CGA-AG-GATGGTCTTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 2277209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 505398355777640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |