Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq6 125 7e-24 seq5 93.3 4e-14 >seq6 Length=4002965 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| ||||||| ||||| || || ||||| ||||| || ||||||||||| | Sbjct 1337580 CCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1337521 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | ||| | ||| |||||||| || || || || || | |||||||| || || || Sbjct 1337520 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 1337461 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || ||||| ||| | |||||||| || ||||| Sbjct 1337460 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1337401 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTT 134715 ||||| || || || |||||||| | || || || ||||| ||||||| Sbjct 1337400 TCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1337352 Score = 114 bits (126), Expect = 1e-20 Identities = 161/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 ||||||| |||||||| ||||| || || ||||| ||||| || |||||||||||| | Sbjct 1219246 CCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 1219187 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | ||| |||||||| || || || || || | |||||||| || || || Sbjct 1219186 AGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 1219127 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || || || || || ||||| ||| | ||||| || || ||||| Sbjct 1219126 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACC 1219067 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCA 134712 ||||| || || || || || || | || || || || ||||||| Sbjct 1219066 TCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1219021 >seq5 Length=4198534 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/228 (71%), Gaps = 11/228 (5%) Strand=Plus/Minus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || |||| |||||| | ||||| || || ||||| ||||| |||||||||||||| | Sbjct 2277207 CCACCTCGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTC-AGA 2277149 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || |||||||| || || |||||||||| |||||||| | || || Sbjct 2277148 AGAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTTCGG-GGG 2277090 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCA-ATGTGTCGGACGATTCCAC 134665 || ||||| || || ||||| || ||||| ||| | |||||| || || || Sbjct 2277089 ATCCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGGTGTCGAAC---TCAAC 2277033 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 |||||||| ||| ||| | | | | || || |||||||| ||||| Sbjct 2277032 -TCGAGAGTGATG--TTTCCAG--TCAGGTCTTGACGAAAATCTGCAT 2276990 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/191 (72%), Gaps = 17/191 (9%) Strand=Plus/Minus Query 134527 TTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCA 134586 ||||||||||||||||| || || || || |||||||| || || || ||||||| Sbjct 2276951 TTTGAATGTTGTAGTCGGAAA--GTTCGACCATCCTCGAGCTGCTTACCAGCGAAAATCA 2276894 Query 134587 AACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTT---TTGTTTGACCGCGT 134643 ||||||| || || || || ||| | || || ||||| || ||| || || Sbjct 2276893 ---GCTGCTGGTCCGGGGGAAT-CCTCCCTTGTCCTGAATCTTGACTTGATT------GT 2276844 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAG-TAATGGTTTTACCGGTTAAAGTTTTAACG 134702 | | |||||||| || || || ||||||| | |||||||| || || | ||| || ||| Sbjct 2276843 CGATGGTGTCGGAAGACTCAACCTCGAGAGTTGATGGTTTTTCCAGTCAGAGTCTTGACG 2276784 Query 134703 AAAATTTGCAT 134713 |||| |||||| Sbjct 2276783 AAAA-TTGCAT 2276774 Score = 89.7 bits (98), Expect = 5e-13 Identities = 162/227 (71%), Gaps = 9/227 (4%) Strand=Plus/Minus Query 134490 CCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAA-C 134548 |||| |||||| ||| ||| || | ||||| ||||| ||||||||||||||| || Sbjct 2277429 CCTCGGAGTCGGAAC--GAGATGG-GAGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGA 2277373 Query 134549 GGTGTGAGAGTCGTC-GAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTA 134607 || || || || |||||| || || || ||||||| |||||||| || || || | Sbjct 2277372 AGTTCGACCATCCTCGGAGCTGCTTACCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAA 2277313 Query 134608 TGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGT 134667 | || || || || ||||| || || | ||| | |||||||| || || || | Sbjct 2277312 TTCCCTCCTTGTCCTGAATCTTGGACTTTA-ATTGTCGATGGTGTCGGAAGACTCAACCT 2277254 Query 134668 CGAGAGTAATGGT-TTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||| || ||||| ||| || || | ||| || |||||||| ||||| Sbjct 2277253 CGA-AG-GATGGTCTTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 2277209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398355777640