Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12]
7 sequences; 20,547,992 total letters
Query= NC_027923.1
Length=132831
Score E
Sequences producing significant alignments: (Bits) Value
seq4 107 2e-18
seq6 96.9 3e-15
seq5 87.8 2e-12
>seq4
Length=3629463
Score = 107 bits (118), Expect = 2e-18
Identities = 164/233 (70%), Gaps = 3/233 (1%)
Strand=Plus/Plus
Query 130764 GAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGGATT 130823
|||| ||||||||| |||| || | || |||||||||| |||| ||||||| || | |
Sbjct 424260 GAAACTCACCAGCCTGGACCCGACGAAGGTAAATGTTGGACGTGTACGGTTCGAAACACT 424319
Query 130824 CGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAGAAT 130883
|||||| ||| | || || | ||| | || || |||||| || || | |||||| |
Sbjct 424320 CGTTGTGGCCCAGAATCTGCGATGTGGAAGCTGTAGGCATGGGGGCAACAAGTAGAGAGT 424379
Query 130884 TACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGGTAG 130943
| || | |||||| | | || || ||| | | |||||||||| ||| | |
Sbjct 424380 TTCGCATACCGTGTTTGGCGAGCTTGGTCTTGAGGCGAGCCCAATCCCAGAGATCCGACG 424439
Query 130944 GTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTG 130996
|| | |||||||||| |||||| || || | || | |||||||||||||
Sbjct 424440 GTGTC---TTGTTCCACAGATCAAACTGCAGCTTTCCCTGACTGGCGGGACTG 424489
Score = 104 bits (114), Expect = 2e-17
Identities = 239/354 (68%), Gaps = 7/354 (2%)
Strand=Plus/Plus
Query 131656 CATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCTCTTCTGT 131715
|||||||| || ||||||||||| ||||| || || || | ||| || || || |
Sbjct 425155 CATAAACAGGTCAGGCACCCATAAGGCGTAGAAGAGGTCACGGGCTCGATTTTCCTCGGC 425214
Query 131716 ACCCATAAttttt-ttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTTCCAAAT 131774
| |||| ||||| || ||| | || ||||||||||| ||||||||||| |||||||
Sbjct 425215 A-CCATGGTTTTTGCGCAGATTCAGGAAATCCAAAATGTCTGCATGCCAGGGCTCCAAAT 425273
Query 131775 ACACTGCCATTGCGCCTTTGCG---CTTACCGCCTTGATTAACATGACGAACCATGTTGT 131831
||||||| | || ||| || || || ||||| | || | ||| | ||||||
Sbjct 425274 ACACTGCAAACGCTCCTGGACGTTTGTTTCCTCCTTGGTCCACGTACCGAGCAGTGTTGT 425333
Query 131832 TGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAATG-TAG 131890
|| | || | | ||| || | | ||| || |||| | | | ||||| ||
Sbjct 425334 TGAACACTCTGAGCATAGGAACGATTCCGGAGGATCTTCCTTGAGACCCAGTAATGAGAG 425393
Query 131891 CTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAGAGATT 131950
|| || |||||||| || ||||| | | | || ||||||||| || ||| ||||||
Sbjct 425394 CT-CCCTTGGCTCTAATGTTGTGGATATGCAAGCCGATACCTCCGGCGGTTTTGGAGATT 425452
Query 131951 AGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGGCAATG 132004
| || || | | || |||| ||||| || || | | ||| || || |||
Sbjct 425453 TGGGCACACGTTTTGAGCGTGTCGTAGATGCCGTCGATGGAGTCTGCTGCCATG 425506
>seq6
Length=4002965
Score = 96.9 bits (106), Expect = 3e-15
Identities = 157/226 (69%), Gaps = 0/226 (0%)
Strand=Plus/Minus
Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080
||||| || | |||| || | ||| | || || || || || || |||||||||
Sbjct 1219246 CCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 1219187
Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140
| | || |||| |||||||| ||||||||| | || || ||||| || ||||| ||
Sbjct 1219186 AGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 1219127
Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200
| ||||| || || ||||||| || | | | || | ||||| | || || ||
Sbjct 1219126 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACC 1219067
Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCA 27246
|| || || |||| ||||| || || || || |||||||||||||
Sbjct 1219066 TCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1219021
>seq5
Length=4198534
Score = 87.8 bits (96), Expect = 2e-12
Identities = 100/132 (76%), Gaps = 2/132 (2%)
Strand=Plus/Minus
Query 96897 GGGTTTCATGTACACGAGTTTGGCGACACGAGCAACGGCTGCACTTCGGCCGGCGAACAT 96956
|| || || || ||||||||||| |||| | ||||||||||||||| |||||| ||
Sbjct 1498733 GGATTCCACGTCCACGAGTTTGGTGACAACACCAACGGCTGCACTTCTGCCGGCCCCCAC 1498674
Query 96957 TTCAACCC-TACATTGCAAAATCACGGCGCACCCAGCGCCATTGAACGCCACGTTGGTGA 97015
|||||||| | || | | || ||||| | |||| || | ||| || |||||||||||
Sbjct 1498673 TTCAACCCCTTCAA-GAAGAACCACGGTGGTCCCACCGACTCTGAGCGACACGTTGGTGA 1498615
Query 97016 TCTGGGCAACGT 97027
|| || |||||
Sbjct 1498614 CCTCGGAAACGT 1498603
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 424934363747784
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |