Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12]
7 sequences; 20,547,992 total letters
Query= NC_028110.1
Length=171045
Score E
Sequences producing significant alignments: (Bits) Value
seq6 280 2e-70
seq4 147 2e-30
seq2 98.7 1e-15
>seq6
Length=4002965
Score = 280 bits (310), Expect = 2e-70
Identities = 425/602 (71%), Gaps = 2/602 (0%)
Strand=Plus/Plus
Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGACTACACGCGTGTCCGTGAGACGTACG 53252
||||||| ||| | | ||||||||||| ||| || | || | | |||||| |||
Sbjct 3933549 TCATGCGAGTCTCTGTCGGTATCCACGGCGACAACATTGCCCGGGCCATTGAGACCTACA 3933608
Query 53253 ACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGA 53312
||| ||| || |||||||| || ||||| | || || || | |||||| || ||
Sbjct 3933609 ACTATATGTCTCAGAAGTACTTCACTCACGCTTCCCCCACTCTCTACAACGCCGGAACTC 3933668
Query 53313 ATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCA 53372
|| |||||||||||| || ||||| || |||||||| ||||| ||||||||||
Sbjct 3933669 CCCAGCCTCAGATGTCGTCGTGTTTCCTTGTCAACATGAAGGACGACTCCATCGACGGCA 3933728
Query 53373 TCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC- 53431
||||||| || ||||| ||||| | || ||||||| | || ||||||||| |
Sbjct 3933729 TCTACGATACCCTCAAAACCTGTGCTCTGATTTCCAAGTCTGCCGGCGGTATCGGTCTGT 3933788
Query 53432 CACTGCTCGAACGTCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGAT 53491
| | | | ||| |||| || | ||| | || || || ||||| | || |
Sbjct 3933789 CTATCCAC-AACATCCGAGCTACTGGCTCCTACATTGCTGGAACTAACGGAACCTCCAAC 3933847
Query 53492 GGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGT 53551
|| |||||||| ||||| || |||| |||||||| ||||| ||||| | ||||| ||
Sbjct 3933848 GGTATCGTGCCCATGCTGCGTGTCTATAACAACACCGCCCGATACGTTGATCAGGGAGGC 3933907
Query 53552 GGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAG 53611
||||| || | || || || ||||| ||||| ||||||| ||| || | |||
Sbjct 3933908 AACAAGCGACCTGGTGCCTTTGCAATGTACCTTGAGCCCTGGCACGACGATATCTTCGAG 3933967
Query 53612 TTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACA 53671
|| ||||||||| ||| || || | |||||||| || ||| ||||||||
Sbjct 3933968 TTCTGCGAGCTGCGAAAGAACCACGGAAAGGAAGAGATTCGAGCCCGAGACCTGTTCCTG 3934027
Query 53672 GCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTG 53731
||||||||||| || ||||| |||||| | || ||| || ||| || ||| ||||
Sbjct 3934028 GCTCTGTGGATCCCCGACCTGTTCATGGAGCGAGTCGAGCAGAACGCTGAATGGACCCTG 3934087
Query 53732 ATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATG 53791
|||||||| |||||||||||||| || | | ||||| ||||| |||||||| || ||
Sbjct 3934088 ATGTGCCCCAACGAGTGCCCCGGTCTTGACGACGTCTATGGTGATGAGTTTAAGCAGCTG 3934147
Query 53792 TA 53793
||
Sbjct 3934148 TA 3934149
Score = 147 bits (162), Expect = 2e-30
Identities = 529/813 (65%), Gaps = 36/813 (4%)
Strand=Plus/Plus
Query 55136 CGGAACCTGAACCGGGTCATCGACAAGAATTACTACCCGACTGAAGCGGCGCGCAAGTCC 55195
|| ||||| ||| |||||||| || ||||||||| | ||| |||||
Sbjct 3934469 CGAAACCTCAACGCTATCATCGACCGAAACTACTACCCGGTCCCCGAGGCCAAGAAGTCT 3934528
Query 55196 AACCTCCGGCACCGGCCCATCGCCATCGGTGTACAGGGCTTGGCCGACATCTTCATGATG 55255
||| | || ||||| ||||| || | ||||| ||||| ||||||||| |||||||
Sbjct 3934529 AACATGCGACACCGACCCATTGCTCTGGGTGTCCAGGGTCTGGCCGACACCTTCATGGCT 3934588
Query 55256 CTCGGATTGCCCTTCGACTCGGAACCTGCTCGAGAAATTAACCAGG-ACATCTTC-AGTC 55313
|| || | || || || || || || | |||| | | || | |||||| || |
Sbjct 3934589 CTACGACTCCCATTTGAGTCCGAGGAGGC-CAAGAAGCTCAACATCCAGATCTTCGAGAC 3934647
Query 55314 GCATCTACTTTGCAGCGCTCGAGGAGTCGTGTCATCTGGCTAT-GAGCGAGGGGACCTAC 55372
||||||| | ||| |||| | || | | ||||| | ||| || || |||||
Sbjct 3934648 -CATCTACCACGGAGCTGTCGAAGCCTCTTACGAGATGGCTCTTGAG-GACGGTGCCTAC 3934705
Query 55373 GAGACGTTCCGTGATTCGCCAGCTGACAAGGGACTTCTCCAGTTCGATCTATGGGGCAAG 55432
||||| |||| | || || || |||||| |||||||||||||| ||| |
Sbjct 3934706 GAGACCTTCCAGGGCTCCCCTGCCTCCAAGGGTGACCTCCAGTTCGATCTCTGGAACG-- 3934763
Query 55433 TCTGACCCCAT-------------GTTTGACAAGTTGAAG--CATGA-CATTCACTTGTG 55476
|||| || | || ||| | | ||| || || ||| | |
Sbjct 3934764 --TGACTCCTTCCGAGCTGTGGGAGTGGGACGATCTCAAGGCCAAGATCATGAA---GAC 3934818
Query 55477 GGGCCTACGCAACTCCCTGCTCGTGGCGCCAATGCCAACCGCGTCGACGGCTCAGATCAT 55536
|| | || ||||| ||| | || || || ||||| || || || || | ||||| |
Sbjct 3934819 TGGTATGCGAAACTCGCTGTTGGTCGCTCCCATGCCCACTGCCTCCACTTCCCAGATTCT 3934878
Query 55537 GGGCAACAACGAGGCGTTCGAGCCGTACACGACCAACATCTACCTGCGCCGGACCCTAGC 55596
|| ||| ||| |||||||| ||||| ||||||| ||| || || || ||
Sbjct 3934879 TGGTTTCAATGAGTGCTTCGAGCCCTACACTTCCAACATTTACTCTCGACGAGTTCTTGC 3934938
Query 55597 AGGTGAGTTTGTCATGATCAACAAGCACCTCGTCAAGGACCTGCAGAAGATCAACAAGTG 55656
||||| || || ||||| || ||||||||||| || | | |||
Sbjct 3934939 TGGTGAATTCCAGATTGTCAACCCCTGGCTGCTCAAGGACCTGGTTGAGGTTGGCCTGTG 3934998
Query 55657 GAACCCGCAGATCAAGA-CGGATATTGT-GCGGAACGGGGGGTCCGTCCAGAATCTGG-- 55712
|||| | || |||| | || ||||| || || | || ||||| ||||| |
Sbjct 3934999 GAACGAGACCATGAAGAACCGA-ATTGTTGCTGA-CAACGGATCCGTGCAGAACATCCCC 3935056
Query 55713 -AGATTCCTCTGCGTCTCAAGGAGATTTACCGGACGGTGTGGGAGATTCCACAGAAGAGT 55771
| ||||| | | ||||||| | ||| ||| |||||||||||| | |||||| |
Sbjct 3935057 AACATTCCCCAGGAAATCAAGGACCTGTACAAGACCGTGTGGGAGATTTCTCAGAAGCGA 3935116
Query 55772 CTGATTGACATGAGTGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATC 55831
| ||||| ||| ||||| || | | ||| |||||||| ||||| || |||||
Sbjct 3935117 ATCATTGAGATGGCCGCTGACCGATCCCCCTTCATTGACCAGTCTCAGTCCCTCAACATT 3935176
Query 55832 TTCATGGAGAATCCTTCACTGGCCAAGTTGAGCTCGATGCACTTTTACGGGTGGAAGAAG 55891
||| || | ||| | ||| |||| | | ||| |||||||| ||||| |||||||||
Sbjct 3935177 CACATCAAGGACCCTACCATGGGCAAGCTCACCTCCATGCACTTCTACGGCTGGAAGAAG 3935236
Query 55892 GGACTCAAGACGGGTATGTACTATCTGCGGACC 55924
|| |||||||| ||||||||||| ||||| |||
Sbjct 3935237 GGTCTCAAGACAGGTATGTACTACCTGCGAACC 3935269
>seq4
Length=3629463
Score = 147 bits (162), Expect = 2e-30
Identities = 274/397 (69%), Gaps = 4/397 (1%)
Strand=Plus/Minus
Query 53332 CTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAGGA 53391
||| ||||||||||| ||| | ||||| ||||||||||||||||| ||||||||
Sbjct 425521 CTGTTTCCTGGTGGCCATGGCAGCAGACTCCATCGACGGCATCTACGACACGCTCAAAAC 425462
Query 53392 GTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCACTGCTCGAACGTCCGTGC 53451
||||||||| |||||||| | || |||||||| | || | ||| | | ||
Sbjct 425461 GTGTGCCCAAATCTCCAAAACCGCCGGAGGTATCGGCTTGCATATCCACAACATTAGAGC 425402
Query 53452 GAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGCTCCG 53511
|| || | | || | ||| | | || || |||||||| ||||||||| |
Sbjct 425401 CAAGGGAGCTCTCATTACTGGGTCTCAAGGAAGATCCTCCGGAATCGTTCCTATGCTCAG 425342
Query 53512 CGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCG-CAAGGGGTCGT 53570
|| ||||||||||| || |||||||| |||| || || || || | ||| | |||
Sbjct 425341 AGTGTTCAACAACACTGCTCGGTACGTGGACCAAGGAGGAAACAAACGTCCAGGAG-CGT 425283
Query 53571 TCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTGA 53630
| || | || | ||||| ||||| || |||||| |||| || || | ||||| |
Sbjct 425282 TTGCAGTGTATTTGGAGCCCTGGCATGCAGACATTTTGGATTTCCTGAATCTGCGCAAAA 425223
Query 53631 ATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGAC 53689
| || |||| ||| || | || ||||||||| || ||| || | ||| | || |||
Sbjct 425222 ACCATGGTGCCGAGGAAAATCGAGCCCGTGACCTCTTCTAC-GCCTTATGGGTGCCTGAC 425164
Query 53690 CTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGT 53726
|| || |||| || || ||||| | ||| ||||||
Sbjct 425163 CTGTTTATGCGCAAAGTCGAGAATGGCGAAAAGTGGT 425127
>seq2
Length=3044971
Score = 98.7 bits (108), Expect = 1e-15
Identities = 354/546 (65%), Gaps = 12/546 (2%)
Strand=Plus/Plus
Query 74730 AGGTGAGAGTAAAGC-GTCACGGCAAACTCCTGATGCGAGCCTTCATCTCTGCTTATCAA 74788
||||| ||| ||||| | || |||||| || ||| || || |||| | || |
Sbjct 506373 AGGTGCGAGAAAAGCAGGCA-GGCAAAGTCAGTGTGCAGACCCTCGTCTCGGGAGATGAG 506431
Query 74789 TTCATTCGAAAACGAAAGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACA 74848
|| || || || | ||||||||||| || || |||||||| | ||| |||||||
Sbjct 506432 CTCGTTGGAGAAGGTGAGGCCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGC 506491
Query 74849 GAAGGAACCACTGAAGAAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA 74908
||| || || |||||||||||| ||||| |||||||| | || || | | | ||
Sbjct 506492 GAAAGAGCCGGAGAAGAAGATGCCCTCGACGGCGGCAAAGGCAATGAGTCGCT-CTCCAA 506550
Query 74909 CGGTG----CATCGGAAGTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA- 74963
|||| | ||| | ||||| | | ||||| || || ||| |||| |||
Sbjct 506551 AGGTGGACTCTTCGTCGGAGATCCACTTGAGGGCCCAGTCGGCCTTTTTCTTGA-TGCAG 506609
Query 74964 GGGACAGTATCGATCGCTTGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTG 75023
|||| || ||||| || | ||| ||| | ||||| ||| ||||||| | ||
Sbjct 506610 GGGATGGTCTCGATGGCGTTGAACAGGTAGGTTCGCTCTTTGGGGTCCTTGATGTATGTG 506669
Query 75024 TCAATCATAAGTGAGTACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAG 75083
|| |||| || ||||| ||||| || || || ||| | | |||| | |||||
Sbjct 506670 TCGATCAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAG 506729
Query 75084 AAAGACCGCGCCTCTGCAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATG 75143
|| || ||||| | ||| || || || || | | | ||||| |
Sbjct 506730 AAGCACTTGGCCTCGGGGGCCTGCACCTCGCCGGAGAATCGCTCAACCAGGTTCTCGTTA 506789
Query 75144 ACGATGCCGTCCGAGGCGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCG 75203
||||| ||||| ||||| || || || || || || ||| ||| |||||||||
Sbjct 506790 ACGATACCGTCGGAGGCAGCAAAGAATGCGAGAACGTGGGAGATGAAGAACCGCTCATCG 506849
Query 75204 TCAGTGAGT---TTGTCCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTC 75260
| ||||| || ||||| || || |||| | | |||||||||||| | |||
Sbjct 506850 TTGTTGAGTCTGTTCTCCCAGTCACCCATGTCCTTTCCAAGATCAATCTCCTCAGCTGTC 506909
Query 75261 CAGAAA 75266
||||||
Sbjct 506910 CAGAAA 506915
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547215952118600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |