Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq6 217 2e-51 seq5 143 3e-29 >seq6 Length=4002965 Score = 217 bits (240), Expect = 2e-51 Identities = 689/1059 (65%), Gaps = 33/1059 (3%) Strand=Plus/Minus Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774 |||||| ||| ||||| ||||| || || | || || || ||||| ||| |||| || Sbjct 3934585 CATGAAGGTGTCGGCCAGACCCTGGACACCCAGAGCAATGGGTCGGTGTCGCATGTTAGA 3934526 Query 80775 TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT 80834 || |||||| || | ||||| |||| ||||||| ||| ||||| || Sbjct 3934525 CTTCTTGGCCTCGGGGACCGGGTAGTAGTTTCGGTCGATGATAGCGTTGAGGTTTCGCAC 3934466 Query 80835 AACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAA-------TTGGT-TCCCCT-- 80884 || ||| | || || || || |||| |||||| | ||||| || || Sbjct 3934465 AATGACCTTGGCAATGTCGTGCAGCTTCTTGAAGTCGTAGAACGAGTTGGTGTCGTCTCG 3934406 Query 80885 --TCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATC 80942 | ||||| | || || | ||| ||||| ||||| || || ||||| |||| | Sbjct 3934405 AGTAACAAAAGTGGGCAGAGCGATGGAAGCCAGGTTGCAGACAGCGACCTCATCAGGAGA 3934346 Query 80943 TGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTG 81002 | |||| || || || ||||| ||||||||||||||||| || ||||| ||||| Sbjct 3934345 AGAGTACTCTACAATCTCACAGCACAGGTTAGAAGACTTAATTGTTCCGAGGTTCTTCTG 3934286 Query 81003 GTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTG 81062 ||| ||||| |||||| | ||||||||| |||| | ||| | |||| |||| ||| Sbjct 3934285 GTTGGACTTTCGGTTGCAGGAGTCCTTGTACAGCATGAAGGGGTTGCCGGACTCGGTCTG 3934226 Query 81063 TGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTC 81122 | | ||| ||| || ||| | || | || || ||| | ||| || Sbjct 3934225 GCAGTCGAGAATGTGGTACCACAGCTTCTGGGCAGGGATGGTTCGTCGGCCTCGGCCCTC 3934166 Query 81123 GGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGT-GAAGT--TCAGTGAGGT 81178 | | |||| |||| |||| | | |||| |||| | || || ||| || Sbjct 3934165 CTTCTCGTACTGCTCGTACAGCTGCTTA-AACTCATCACCATAGACGTCGTCA---AGAC 3934110 Query 81179 CTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGA 81238 | ||||||||||| |||||||||||| ||| || | || | ||| || || ||||| Sbjct 3934109 CGGGGCACTCGTTGGGGCACATCAGGGTCCATTCAGCGTTCTGCTCGACTCGCTCCATGA 3934050 Query 81239 AAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCT 81298 | ||| |||||||| || || ||||||||| ||| || ||| || | || | Sbjct 3934049 ACAGGTCGGGGATCCACAGAGCCAGGAACAGGTCTCGGGCTCGAATCTCTTCCTTTCCGT 3933990 Query 81299 GGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGG 81358 |||| |||| |||| || || | ||| || | ||||| ||||| || |||| | Sbjct 3933989 GGTTCTTTCGCAGCTCGCAGAACTCGAAGATATCGTCGTGCCAGGGCTCAAGGTACATTG 3933930 Query 81359 CGATCGACCC------CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAA 81412 | | | || |||| ||| ||||| | ||||| ||||| || |||| Sbjct 3933929 CAAAGGCACCAGGTCGCTTGTT---GCCTCCCTGATCAACGTATCGGGCGGTGTTGTTAT 3933873 Query 81413 ATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACC 81472 | ||||||| ||| || | |||||| | || ||||| || || | || || | Sbjct 3933872 AGACACGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTAGTTCCAGCAATGTAGGAGC 3933813 Query 81473 CCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAG 81532 | | || || | ||| ||| || |||||||| || || | |||| |||||| ||| Sbjct 3933812 CAGTAGCTCGGATGTTGTGGATAGACAGACCGATACCGCCGGCAGACTTGGAAATCAGAG 3933753 Query 81533 CACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGA 81592 |||| || | ||| || || || || |||||| || | ||||||| | | || Sbjct 3933752 CACAGGTTTTGAGGGTATCGTAGATGCCGTCGATGGAGTCGTCCTTCATGTTGACAAGGA 3933693 Query 81593 AACAGCTTGACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTG 81650 |||| ||||||||||| | ||| ||||| ||| | || || |||| ||||| Sbjct 3933692 AACACGACGACATCTGAGG--CTGGGGAGTTCCGGCGTTGTAGAGAGTGGGGGAAGCGTG 3933635 Query 81651 AATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACC 81710 | |||| || | ||||| || ||||| || || | || | ||| | ||| || Sbjct 3933634 AGTGAAGTACTTCTGAGACATATAGTTGTAGGTCTCAATGGCCCGGGCAATGTTGTCGCC 3933575 Query 81711 GTGAATACCGATAGCTACACGCATAAACATGTACTGGGG 81749 ||| ||||||| || || ||||| | ||| | ||||| Sbjct 3933574 GTGGATACCGACAGAGACTCGCATGATCATCTGTTGGGG 3933536 Score = 190 bits (210), Expect = 2e-43 Identities = 179/228 (79%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| || ||||||||||| |||||||| |||||||| || || ||||| ||||| Sbjct 1337353 AATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTCGAGGTGGAGTCTTC 1337412 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | || | ||| | || || |||||||||||||||||||| || ||||| Sbjct 1337413 CGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCA 1337472 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || || || || |||||||| |||||||| | || ||||| | ||||| || Sbjct 1337473 GCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACAA 1337532 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| ||||| ||| |||| ||||| ||||| Sbjct 1337533 CATCCAGAAGGAGTCCACTCTCCATCTCGTCCTGCGACTTCGAGGTGG 1337580 Score = 183 bits (202), Expect = 3e-41 Identities = 176/226 (78%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466 ||||||||||||||||||| ||||| ||||||||||| || || ||||| ||||| || Sbjct 1219021 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAGTCCTCTG 1219080 Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526 | | ||||| || | ||| | || || ||||||||||||||||| || || ||||||| Sbjct 1219081 ACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAGC 1219140 Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATG 27586 |||| || || || || |||||||| |||||||| | || || || | ||||| || Sbjct 1219141 AGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACTCTTTCCGACTACAACA 1219200 Query 27587 TCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| |||||||| ||||| || |||| || || || || Sbjct 1219201 TCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCGACTCCGAGGAGG 1219246 Score = 111 bits (122), Expect = 2e-19 Identities = 132/179 (74%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || ||||| |||||||| || |||||||| ||||||||||||||||| | |||||| || Sbjct 3935268 GTTCGCAGGTAGTACATACCTGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATGGAG 3935209 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157 ||||||| | | || |||| || ||| ||||| || ||||||||||| ||| Sbjct 3935208 GTGAGCTTGCCCATGGTAGGGTCCTTGATGTGAATGTTGAGGGACTGAGACTGGTCAATG 3935149 Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216 || | || || || ||||| ||||| ||| ||| || | ||| ||||| || || Sbjct 3935148 AAGGGGGATCGGTCAGCGGCCATCTCAATGATTCGCTTCTGAGAAATCTCCCACACGGT 3935090 >seq5 Length=4198534 Score = 143 bits (158), Expect = 3e-29 Identities = 173/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || ||||| || ||||| ||||||||||| Sbjct 2276548 ATGCAGATTTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTTGAGTCTTCC 2276607 Query 27466 GATAGCATTG-CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| | | ||| | || |||||||||||||||| ||||| || ||||| Sbjct 2276608 GACACCATCGACAATTGTCAAGTC-AAGATTCAGGACAAGGAGG--ATTCCCCCGGACCA 2276664 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC-CCTAGCAGACTATA 27583 |||||| || ||||| ||||||||||| |||||||||| || || | | | ||||| | Sbjct 2276665 GCAGCGACTGATTTTCGCTGGTAAGCAGCTCGAGGATGGTCCAACTCTTTCCGGACTAAA 2276724 Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | || || || |||||||| ||||| | | || || || ||||| Sbjct 2276725 ACATTCAGAA-GAGTCCACTCTCCATCTCTTTCTCCGACTCCGAGGTGG 2276772 Score = 132 bits (146), Expect = 5e-26 Identities = 161/212 (76%), Gaps = 7/212 (3%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAA-GACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||| || || |||||||| || || || || ||| || || ||||||||||| Sbjct 2277209 ATGCAGATTTTCGTCAAGACTCTGACTGGAAAAGACCATCCTTC--GAGGTTGAGTCTTC 2277266 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | |||| ||| | || ||||||||||||||||||||||| || ||||| Sbjct 2277267 CGACACCATCGACAATTA-AAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCA 2277325 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACT-CGAGGATGATCGTAC-CCTAGCAGACTAT 27582 |||||| || ||||| ||||||||||| || |||||||| ||| || || | ||||| Sbjct 2277326 GCAGCGACTGATTTTCGCTGGTAAGCAGCTCCGAGGATGGTCGAACTTCTTTCCGACTAC 2277385 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 || | || ||||| ||||||| ||||| || Sbjct 2277386 AACATTCAGAAGGAGTCCACTC-CCATCTCGT 2277416 Score = 120 bits (132), Expect = 3e-22 Identities = 168/228 (74%), Gaps = 11/228 (5%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || || | | ||||| ||| |||||| | Sbjct 2276990 ATGCAGATTTTCGTCAAGAC-CTGACTGGAAACA---TCACTCTCGAG-TTGAGTTCG-- 2277042 Query 27466 GATAGC-ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 | | | || | ||| | ||| | || |||||||||||||| || || || | | |||| Sbjct 2277043 -ACACCCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGGATCCCCCGA-ACCA 2277100 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || ||||||||||||||||| |||||||||| || || || | ||||| || Sbjct 2277101 GCAGCGACTGATTTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTCT-TCTGACTACAA 2277159 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| |||||||| ||||| || | || || || ||||| Sbjct 2277160 CATTCAGAAGGAGTCCACTCTCCATCTCGTTCTCCGACTCCGAGGTGG 2277207 Score = 107 bits (118), Expect = 2e-18 Identities = 143/192 (74%), Gaps = 9/192 (5%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || |||||||| || || || || || || |||| ||| |||||| | Sbjct 2276329 ATGCAGATTTTCGTCAAGACTCTGACTGGAAA-ACCATCACTCC-GAG--TGAGTCTTCT 2276384 Query 27466 GATAGCATTGCAAATTTGAAGG-CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| ||| | || | | || ||||||||||||||||||||||| || ||||| Sbjct 2276385 GACACTATTGATAATGTCAAAGTCCAAGATTCAGGACAAGGAGGGAATTCC-CCGGACCA 2276443 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||||| || |||||| |||||||| |||||||||| || ||| | ||||| || Sbjct 2276444 GCAGCGACTGATTTTTCTGGGTAAGCAGCTCGAGGATG---GTTGCCTTTCCGACTACAA 2276500 Query 27585 TGTCCAAAAGGA 27596 | || ||||| Sbjct 2276501 CATTCAGAAGGA 2276512 Score = 100 bits (110), Expect = 3e-16 Identities = 165/229 (72%), Gaps = 12/229 (5%) Strand=Plus/Plus Query 27409 CAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGAT 27468 || || || |||||||| || || || ||||| || ||||| ||||||||||| || Sbjct 2277437 CAGATTTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTTGAGTCTTCCGAC 2277496 Query 27469 AGCATTGCAAATTTGAAGGCTAAAATTC-AGGACAAGGAGGGAATTCCTCCAGACCAGCA 27527 | ||| | ||| | ||| | || |||| |||||||||| || || | || |||||||| Sbjct 2277497 ACCATCGACAATGTCAAGTCCAAGATTCAAGGACAAGGAAGGGAT--CCCCCGACCAGCA 2277554 Query 27528 GCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCG-TACCCTAGCAGACTATAATG 27586 ||| | ||||||||||| |||| | |||||||| || || || | | | || Sbjct 2277555 GCG-ATGATTTTTGCTGG--AGCAGC-CGAGGATGGCCGAAACTCTTTC---CGAAAACA 2277607 Query 27587 TCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| |||| ||| ||||| || | || || || ||||| || Sbjct 2277608 TCCAGAAGGAGTCCA-TCTCCATCTCGTTCTTCGACTCCGAGGTGGCCA 2277655 Score = 98.7 bits (108), Expect = 1e-15 Identities = 125/165 (76%), Gaps = 9/165 (5%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTA-CTCTTGAGGTTGAGTCAGG 27464 |||||| | || |||||||| || || || || || || | |||| ||||||||||| Sbjct 2276774 ATGCAATT-TTCGTCAAGACTCTGACTGGAAAAACCATCAACTCTCGAGGTTGAGTCTTC 2276832 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | ||| | ||| ||| | || ||||||||||||| ||| |||| || ||||| Sbjct 2276833 CGACACCATCGACAATC--AAGTC-AAGATTCAGGACAAGGGAGGA-TTCCCCCGGACCA 2276888 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC 27569 ||||| | ||||| ||||||||||| |||||||||| ||| || Sbjct 2276889 GCAGC---TGATTTTCGCTGGTAAGCAGCTCGAGGATGGTCGAAC 2276930 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/201 (72%), Gaps = 15/201 (7%) Strand=Plus/Plus Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474 ||| ||||||| || || || ||||| || ||||| ||||||||||| | | ||| Sbjct 2276122 TTTCTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTTGAGTC-TTCCACACCATC 2276180 Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534 | ||| | ||| | ||| |||||||||| ||||||||| |||| ||| || Sbjct 2276181 GACAATGTCAAGTCCAAA--TCAGGACAAGAGGGGAATTCC----CACCA-AGGCGACTG 2276233 Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA-TAATGTCCAAAA 27593 ||||||||||||||||| ||||||| | | ||||| | ||||| || | || || Sbjct 2276234 ATTTTTGCTGGTAAGCA----GAGGATGGT-GAACCCTGTCTGACTACAAACATTCAGAA 2276288 Query 27594 GGAATCCACTCTTCATCTAGT 27614 ||| ||||| || ||||| || Sbjct 2276289 GGAGTCCAC-CTCCATCTCGT 2276308 Score = 86.0 bits (94), Expect = 7e-12 Identities = 125/167 (75%), Gaps = 10/167 (6%) Strand=Plus/Plus Query 27452 AGGTTGAGTCAGGTGATAGCATTG-CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGA 27510 |||| ||||| || | ||| | |||| | ||| | || |||||||||||||| ||| Sbjct 2275940 AGGTCGAGTCCTCCGACACCATCGACAAACGTCAAGTCCAAGATTCAGGACAAGGA-GGA 2275998 Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570 |||||||| || |||||||| || |||| || |||||||| |||||||||| || ||| Sbjct 2275999 ATTCCTCCGGA-CAGCAGCGACT-GTTTTCGC-GGTAAGCAGCTCGAGGATGGCCGAACC 2276055 Query 27571 CTAG--CAGACTA-TAATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614 | | | ||||| || | || ||||| ||||||| ||||| || Sbjct 2276056 CCTGTCCTGACTACAAACATTCAGAAGGA--CCACTCTCCATCTCGT 2276100 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310350097840