Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12]
7 sequences; 20,547,992 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq6 217 2e-51
seq5 143 3e-29
>seq6
Length=4002965
Score = 217 bits (240), Expect = 2e-51
Identities = 689/1059 (65%), Gaps = 33/1059 (3%)
Strand=Plus/Minus
Query 80715 CATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGA 80774
|||||| ||| ||||| ||||| || || | || || || ||||| ||| |||| ||
Sbjct 3934585 CATGAAGGTGTCGGCCAGACCCTGGACACCCAGAGCAATGGGTCGGTGTCGCATGTTAGA 3934526
Query 80775 TCGCTCGGCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGT 80834
|| |||||| || | ||||| |||| ||||||| ||| ||||| ||
Sbjct 3934525 CTTCTTGGCCTCGGGGACCGGGTAGTAGTTTCGGTCGATGATAGCGTTGAGGTTTCGCAC 3934466
Query 80835 AACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAA-------TTGGT-TCCCCT-- 80884
|| ||| | || || || || |||| |||||| | ||||| || ||
Sbjct 3934465 AATGACCTTGGCAATGTCGTGCAGCTTCTTGAAGTCGTAGAACGAGTTGGTGTCGTCTCG 3934406
Query 80885 --TCACAAATGCCGGAAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATC 80942
| ||||| | || || | ||| ||||| ||||| || || ||||| |||| |
Sbjct 3934405 AGTAACAAAAGTGGGCAGAGCGATGGAAGCCAGGTTGCAGACAGCGACCTCATCAGGAGA 3934346
Query 80943 TGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTG 81002
| |||| || || || ||||| ||||||||||||||||| || ||||| |||||
Sbjct 3934345 AGAGTACTCTACAATCTCACAGCACAGGTTAGAAGACTTAATTGTTCCGAGGTTCTTCTG 3934286
Query 81003 GTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTG 81062
||| ||||| |||||| | ||||||||| |||| | ||| | |||| |||| |||
Sbjct 3934285 GTTGGACTTTCGGTTGCAGGAGTCCTTGTACAGCATGAAGGGGTTGCCGGACTCGGTCTG 3934226
Query 81063 TGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTC 81122
| | ||| ||| || ||| | || | || || ||| | ||| ||
Sbjct 3934225 GCAGTCGAGAATGTGGTACCACAGCTTCTGGGCAGGGATGGTTCGTCGGCCTCGGCCCTC 3934166
Query 81123 GGCCACATACTTGGCGTA-AGCTTCGTCGAACTTGGCACCGT-GAAGT--TCAGTGAGGT 81178
| | |||| |||| |||| | | |||| |||| | || || ||| ||
Sbjct 3934165 CTTCTCGTACTGCTCGTACAGCTGCTTA-AACTCATCACCATAGACGTCGTCA---AGAC 3934110
Query 81179 CTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGA 81238
| ||||||||||| |||||||||||| ||| || | || | ||| || || |||||
Sbjct 3934109 CGGGGCACTCGTTGGGGCACATCAGGGTCCATTCAGCGTTCTGCTCGACTCGCTCCATGA 3934050
Query 81239 AAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCT 81298
| ||| |||||||| || || ||||||||| ||| || ||| || | || |
Sbjct 3934049 ACAGGTCGGGGATCCACAGAGCCAGGAACAGGTCTCGGGCTCGAATCTCTTCCTTTCCGT 3933990
Query 81299 GGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGG 81358
|||| |||| |||| || || | ||| || | ||||| ||||| || |||| |
Sbjct 3933989 GGTTCTTTCGCAGCTCGCAGAACTCGAAGATATCGTCGTGCCAGGGCTCAAGGTACATTG 3933930
Query 81359 CGATCGACCC------CTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAA 81412
| | | || |||| ||| ||||| | ||||| ||||| || ||||
Sbjct 3933929 CAAAGGCACCAGGTCGCTTGTT---GCCTCCCTGATCAACGTATCGGGCGGTGTTGTTAT 3933873
Query 81413 ATACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACC 81472
| ||||||| ||| || | |||||| | || ||||| || || | || || |
Sbjct 3933872 AGACACGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTAGTTCCAGCAATGTAGGAGC 3933813
Query 81473 CCTTGGCGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAG 81532
| | || || | ||| ||| || |||||||| || || | |||| |||||| |||
Sbjct 3933812 CAGTAGCTCGGATGTTGTGGATAGACAGACCGATACCGCCGGCAGACTTGGAAATCAGAG 3933753
Query 81533 CACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGA 81592
|||| || | ||| || || || || |||||| || | ||||||| | | ||
Sbjct 3933752 CACAGGTTTTGAGGGTATCGTAGATGCCGTCGATGGAGTCGTCCTTCATGTTGACAAGGA 3933693
Query 81593 AACAGCTTGACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTG 81650
|||| ||||||||||| | ||| ||||| ||| | || || |||| |||||
Sbjct 3933692 AACACGACGACATCTGAGG--CTGGGGAGTTCCGGCGTTGTAGAGAGTGGGGGAAGCGTG 3933635
Query 81651 AATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACC 81710
| |||| || | ||||| || ||||| || || | || | ||| | ||| ||
Sbjct 3933634 AGTGAAGTACTTCTGAGACATATAGTTGTAGGTCTCAATGGCCCGGGCAATGTTGTCGCC 3933575
Query 81711 GTGAATACCGATAGCTACACGCATAAACATGTACTGGGG 81749
||| ||||||| || || ||||| | ||| | |||||
Sbjct 3933574 GTGGATACCGACAGAGACTCGCATGATCATCTGTTGGGG 3933536
Score = 190 bits (210), Expect = 2e-43
Identities = 179/228 (79%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| || ||||||||||| |||||||| |||||||| || || ||||| |||||
Sbjct 1337353 AATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTCGAGGTGGAGTCTTC 1337412
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | ||| | || | ||| | || || |||||||||||||||||||| || |||||
Sbjct 1337413 CGACACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCA 1337472
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||||| || || || || |||||||| |||||||| | || ||||| | ||||| ||
Sbjct 1337473 GCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACAA 1337532
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| |||||||| ||||| ||| |||| ||||| |||||
Sbjct 1337533 CATCCAGAAGGAGTCCACTCTCCATCTCGTCCTGCGACTTCGAGGTGG 1337580
Score = 183 bits (202), Expect = 3e-41
Identities = 176/226 (78%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 27407 TGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTG 27466
||||||||||||||||||| ||||| ||||||||||| || || ||||| ||||| ||
Sbjct 1219021 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAGTCCTCTG 1219080
Query 27467 ATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGC 27526
| | ||||| || | ||| | || || ||||||||||||||||| || || |||||||
Sbjct 1219081 ACACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAGC 1219140
Query 27527 AGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATG 27586
|||| || || || || |||||||| |||||||| | || || || | ||||| ||
Sbjct 1219141 AGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACTCTTTCCGACTACAACA 1219200
Query 27587 TCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| |||||||| ||||| || |||| || || || ||
Sbjct 1219201 TCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCGACTCCGAGGAGG 1219246
Score = 111 bits (122), Expect = 2e-19
Identities = 132/179 (74%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097
|| ||||| |||||||| || |||||||| ||||||||||||||||| | |||||| ||
Sbjct 3935268 GTTCGCAGGTAGTACATACCTGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATGGAG 3935209
Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATGTTCAGAGACTGAGACTGACAGATG 80157
||||||| | | || |||| || ||| ||||| || ||||||||||| |||
Sbjct 3935208 GTGAGCTTGCCCATGGTAGGGTCCTTGATGTGAATGTTGAGGGACTGAGACTGGTCAATG 3935149
Query 80158 AAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATACTGT 80216
|| | || || || ||||| ||||| ||| ||| || | ||| ||||| || ||
Sbjct 3935148 AAGGGGGATCGGTCAGCGGCCATCTCAATGATTCGCTTCTGAGAAATCTCCCACACGGT 3935090
>seq5
Length=4198534
Score = 143 bits (158), Expect = 3e-29
Identities = 173/229 (76%), Gaps = 6/229 (3%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || || ||||| || ||||| |||||||||||
Sbjct 2276548 ATGCAGATTTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTTGAGTCTTCC 2276607
Query 27466 GATAGCATTG-CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | ||| | ||| | | ||| | || |||||||||||||||| ||||| || |||||
Sbjct 2276608 GACACCATCGACAATTGTCAAGTC-AAGATTCAGGACAAGGAGG--ATTCCCCCGGACCA 2276664
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC-CCTAGCAGACTATA 27583
|||||| || ||||| ||||||||||| |||||||||| || || | | | ||||| |
Sbjct 2276665 GCAGCGACTGATTTTCGCTGGTAAGCAGCTCGAGGATGGTCCAACTCTTTCCGGACTAAA 2276724
Query 27584 ATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| | || || || |||||||| ||||| | | || || || |||||
Sbjct 2276725 ACATTCAGAA-GAGTCCACTCTCCATCTCTTTCTCCGACTCCGAGGTGG 2276772
Score = 132 bits (146), Expect = 5e-26
Identities = 161/212 (76%), Gaps = 7/212 (3%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAA-GACTATTACTCTTGAGGTTGAGTCAGG 27464
||||| || || |||||||| || || || || ||| || || |||||||||||
Sbjct 2277209 ATGCAGATTTTCGTCAAGACTCTGACTGGAAAAGACCATCCTTC--GAGGTTGAGTCTTC 2277266
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | ||| | |||| ||| | || ||||||||||||||||||||||| || |||||
Sbjct 2277267 CGACACCATCGACAATTA-AAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCA 2277325
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACT-CGAGGATGATCGTAC-CCTAGCAGACTAT 27582
|||||| || ||||| ||||||||||| || |||||||| ||| || || | |||||
Sbjct 2277326 GCAGCGACTGATTTTCGCTGGTAAGCAGCTCCGAGGATGGTCGAACTTCTTTCCGACTAC 2277385
Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614
|| | || ||||| ||||||| ||||| ||
Sbjct 2277386 AACATTCAGAAGGAGTCCACTC-CCATCTCGT 2277416
Score = 120 bits (132), Expect = 3e-22
Identities = 168/228 (74%), Gaps = 11/228 (5%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || || || | | ||||| ||| |||||| |
Sbjct 2276990 ATGCAGATTTTCGTCAAGAC-CTGACTGGAAACA---TCACTCTCGAG-TTGAGTTCG-- 2277042
Query 27466 GATAGC-ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
| | | || | ||| | ||| | || |||||||||||||| || || || | | ||||
Sbjct 2277043 -ACACCCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGGATCCCCCGA-ACCA 2277100
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||||| || ||||||||||||||||| |||||||||| || || || | ||||| ||
Sbjct 2277101 GCAGCGACTGATTTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTCT-TCTGACTACAA 2277159
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || ||||| |||||||| ||||| || | || || || |||||
Sbjct 2277160 CATTCAGAAGGAGTCCACTCTCCATCTCGTTCTCCGACTCCGAGGTGG 2277207
Score = 107 bits (118), Expect = 2e-18
Identities = 143/192 (74%), Gaps = 9/192 (5%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || |||||||| || || || || || || |||| ||| |||||| |
Sbjct 2276329 ATGCAGATTTTCGTCAAGACTCTGACTGGAAA-ACCATCACTCC-GAG--TGAGTCTTCT 2276384
Query 27466 GATAGCATTGCAAATTTGAAGG-CTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | |||| ||| | || | | || ||||||||||||||||||||||| || |||||
Sbjct 2276385 GACACTATTGATAATGTCAAAGTCCAAGATTCAGGACAAGGAGGGAATTCC-CCGGACCA 2276443
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||||| || |||||| |||||||| |||||||||| || ||| | ||||| ||
Sbjct 2276444 GCAGCGACTGATTTTTCTGGGTAAGCAGCTCGAGGATG---GTTGCCTTTCCGACTACAA 2276500
Query 27585 TGTCCAAAAGGA 27596
| || |||||
Sbjct 2276501 CATTCAGAAGGA 2276512
Score = 100 bits (110), Expect = 3e-16
Identities = 165/229 (72%), Gaps = 12/229 (5%)
Strand=Plus/Plus
Query 27409 CAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGAT 27468
|| || || |||||||| || || || ||||| || ||||| ||||||||||| ||
Sbjct 2277437 CAGATTTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTTGAGTCTTCCGAC 2277496
Query 27469 AGCATTGCAAATTTGAAGGCTAAAATTC-AGGACAAGGAGGGAATTCCTCCAGACCAGCA 27527
| ||| | ||| | ||| | || |||| |||||||||| || || | || ||||||||
Sbjct 2277497 ACCATCGACAATGTCAAGTCCAAGATTCAAGGACAAGGAAGGGAT--CCCCCGACCAGCA 2277554
Query 27528 GCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCG-TACCCTAGCAGACTATAATG 27586
||| | ||||||||||| |||| | |||||||| || || || | | | ||
Sbjct 2277555 GCG-ATGATTTTTGCTGG--AGCAGC-CGAGGATGGCCGAAACTCTTTC---CGAAAACA 2277607
Query 27587 TCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
|||| ||||| |||| ||| ||||| || | || || || ||||| ||
Sbjct 2277608 TCCAGAAGGAGTCCA-TCTCCATCTCGTTCTTCGACTCCGAGGTGGCCA 2277655
Score = 98.7 bits (108), Expect = 1e-15
Identities = 125/165 (76%), Gaps = 9/165 (5%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTA-CTCTTGAGGTTGAGTCAGG 27464
|||||| | || |||||||| || || || || || || | |||| |||||||||||
Sbjct 2276774 ATGCAATT-TTCGTCAAGACTCTGACTGGAAAAACCATCAACTCTCGAGGTTGAGTCTTC 2276832
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|| | ||| | ||| ||| | || ||||||||||||| ||| |||| || |||||
Sbjct 2276833 CGACACCATCGACAATC--AAGTC-AAGATTCAGGACAAGGGAGGA-TTCCCCCGGACCA 2276888
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTAC 27569
||||| | ||||| ||||||||||| |||||||||| ||| ||
Sbjct 2276889 GCAGC---TGATTTTCGCTGGTAAGCAGCTCGAGGATGGTCGAAC 2276930
Score = 87.8 bits (96), Expect = 2e-12
Identities = 145/201 (72%), Gaps = 15/201 (7%)
Strand=Plus/Plus
Query 27415 TTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATT 27474
||| ||||||| || || || ||||| || ||||| ||||||||||| | | |||
Sbjct 2276122 TTTCTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTTGAGTC-TTCCACACCATC 2276180
Query 27475 GCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTA 27534
| ||| | ||| | ||| |||||||||| ||||||||| |||| ||| ||
Sbjct 2276181 GACAATGTCAAGTCCAAA--TCAGGACAAGAGGGGAATTCC----CACCA-AGGCGACTG 2276233
Query 27535 ATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTA-TAATGTCCAAAA 27593
||||||||||||||||| ||||||| | | ||||| | ||||| || | || ||
Sbjct 2276234 ATTTTTGCTGGTAAGCA----GAGGATGGT-GAACCCTGTCTGACTACAAACATTCAGAA 2276288
Query 27594 GGAATCCACTCTTCATCTAGT 27614
||| ||||| || ||||| ||
Sbjct 2276289 GGAGTCCAC-CTCCATCTCGT 2276308
Score = 86.0 bits (94), Expect = 7e-12
Identities = 125/167 (75%), Gaps = 10/167 (6%)
Strand=Plus/Plus
Query 27452 AGGTTGAGTCAGGTGATAGCATTG-CAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGA 27510
|||| ||||| || | ||| | |||| | ||| | || |||||||||||||| |||
Sbjct 2275940 AGGTCGAGTCCTCCGACACCATCGACAAACGTCAAGTCCAAGATTCAGGACAAGGA-GGA 2275998
Query 27511 ATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACC 27570
|||||||| || |||||||| || |||| || |||||||| |||||||||| || |||
Sbjct 2275999 ATTCCTCCGGA-CAGCAGCGACT-GTTTTCGC-GGTAAGCAGCTCGAGGATGGCCGAACC 2276055
Query 27571 CTAG--CAGACTA-TAATGTCCAAAAGGAATCCACTCTTCATCTAGT 27614
| | | ||||| || | || ||||| ||||||| ||||| ||
Sbjct 2276056 CCTGTCCTGACTACAAACATTCAGAAGGA--CCACTCTCCATCTCGT 2276100
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570310350097840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |