Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq3 165 7e-36 seq4 98.7 8e-16 >seq3 Length=3366276 Score = 165 bits (182), Expect = 7e-36 Identities = 396/594 (67%), Gaps = 19/594 (3%) Strand=Plus/Minus Query 29882 TCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCT 29941 ||||||| |||| ||| || || |||||||||| | |||| | | |||||| || Sbjct 1530437 TCCACGTGATCCTTGTACACATGGGCGTCTCCCATGGTGTGAATGAGCTCTCCACAGTCC 1530378 Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 | ||||||| || || ||||| ||||| |||| |||| ||| ||||| ||||| Sbjct 1530377 AAATCGGTGACCTGGGCAATCATTCGGGTGAGCAGAGCGTAGGAGGCAATGTTGAAGGGG 1530318 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAG-----CTC--TCC 30054 || || || |||| ||| | || | ||| || ||||||||||| || ||| ||| Sbjct 1530317 ACTCCAAGACCCAGGTCACATGATCGCTGATACAGCTGACACGACAGACGTCCTCGTTCC 1530258 Query 30055 GTCGCT--------CACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGG 30106 | | ||| |||||||| || | ||| || |||||||| ||||| Sbjct 1530257 GAGTTTTTGTACGACACATAAAACTGGCAAAACATGTGACAGGGAGGAAGCGCCATCTTT 1530198 Query 30107 CCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTG 30166 | || ||||||||| || ||| ||||| || | ||| | |||||| | ||| Sbjct 1530197 GGGAGATCGGCGGGGTTCCATGCAGACAGAATGATTCGACGGTCGTGAGGGTTGGTTCTG 1530138 Query 30167 ATGAG-GTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCAT 30225 | ||| || | | | || ||||| ||||| || || | ||| || | ||| Sbjct 1530137 A-GAGTGTGTATCACCTGTTTGAGCTGGTCCACGCCTTGGCCAGTGTAATCCGTG-TCAC 1530080 Query 30226 G-TCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTC 30284 | | ||||||| ||||||||||| | ||| ||||| || || |||||||||||||||| Sbjct 1530079 AATTCTTGTACTCGGCTCCGAAATGGCGCCATTGGAAGCCATAGACCGGTCCCAGGTCTC 1530020 Query 30285 CCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCC 30344 ||||| ||||| | | || ||| |||| || || | || || || |||||| Sbjct 1530019 CCTCTCGTCTGTGGCCCAGCCCGGCCTTTTCCAGGAACTCCTTAGATCCATTTCCGTCCC 1529960 Query 30345 AGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACA 30404 |||| | | ||||| || | |||| || ||| | || || ||||||| Sbjct 1529959 AGATGTGAATGTTTTTCTCGCTCAGTTTTTTGCCGTCGGTGCATCCAGCCACAAACCACA 1529900 Query 30405 GCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30458 |||||||||| ||| | | ||||| | |||||| ||||| ||||||| Sbjct 1529899 AAAGCTCCTCCAGAACGCCTCGGTAGAAGACTCGCTTGGTGGTGAGCAGGGGAA 1529846 >seq4 Length=3629463 Score = 98.7 bits (108), Expect = 8e-16 Identities = 135/184 (73%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 52729 TCGTCAAGGTGAGGCTGAGGGCCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT 52788 |||| |||||| | || | || ||| | ||| |||| || ||||||||||||||| Sbjct 470639 TCGTTAAGGTGCGAATGCGAACCACCAAGATCCCCCAGATTGGAGACAAGTTTGCGTCGC 470698 Query 52789 -TCACGGCGCAAAAGGGGACG--TGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCG 52845 |||||| || ||||| || || | | ||| | ||| | ||||||||||| ||| Sbjct 470699 GTCACGGA-CAGAAGGGTACCATTGGTGTGACGTACCGAC--ATGAGGACATGCCGTTCT 470755 Query 52846 ACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGA 52905 | || || ||||| ||||| |||||||||||||||||||| |||| || | |||| Sbjct 470756 CCGCCGAGGGAGTGGTCCCCGATATCATCATCAACCCCCACGCCATTCCTTCGCGTATGA 470815 Query 52906 CCGT 52909 |||| Sbjct 470816 CCGT 470819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406310365336644