Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12]
7 sequences; 20,547,992 total letters
Query= NC_028461.1
Length=127011
Score E
Sequences producing significant alignments: (Bits) Value
seq3 165 7e-36
seq4 98.7 8e-16
>seq3
Length=3366276
Score = 165 bits (182), Expect = 7e-36
Identities = 396/594 (67%), Gaps = 19/594 (3%)
Strand=Plus/Minus
Query 29882 TCCACGTTATCCAGGTAGACGTGAGCGTCTCCCAGGTTGTGGACAAACTCTCCCGGTTCT 29941
||||||| |||| ||| || || |||||||||| | |||| | | |||||| ||
Sbjct 1530437 TCCACGTGATCCTTGTACACATGGGCGTCTCCCATGGTGTGAATGAGCTCTCCACAGTCC 1530378
Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001
| ||||||| || || ||||| ||||| |||| |||| ||| ||||| |||||
Sbjct 1530377 AAATCGGTGACCTGGGCAATCATTCGGGTGAGCAGAGCGTAGGAGGCAATGTTGAAGGGG 1530318
Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAG-----CTC--TCC 30054
|| || || |||| ||| | || | ||| || ||||||||||| || ||| |||
Sbjct 1530317 ACTCCAAGACCCAGGTCACATGATCGCTGATACAGCTGACACGACAGACGTCCTCGTTCC 1530258
Query 30055 GTCGCT--------CACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAGG 30106
| | ||| |||||||| || | ||| || |||||||| |||||
Sbjct 1530257 GAGTTTTTGTACGACACATAAAACTGGCAAAACATGTGACAGGGAGGAAGCGCCATCTTT 1530198
Query 30107 CCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTG 30166
| || ||||||||| || ||| ||||| || | ||| | |||||| | |||
Sbjct 1530197 GGGAGATCGGCGGGGTTCCATGCAGACAGAATGATTCGACGGTCGTGAGGGTTGGTTCTG 1530138
Query 30167 ATGAG-GTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCAT 30225
| ||| || | | | || ||||| ||||| || || | ||| || | |||
Sbjct 1530137 A-GAGTGTGTATCACCTGTTTGAGCTGGTCCACGCCTTGGCCAGTGTAATCCGTG-TCAC 1530080
Query 30226 G-TCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTC 30284
| | ||||||| ||||||||||| | ||| ||||| || || ||||||||||||||||
Sbjct 1530079 AATTCTTGTACTCGGCTCCGAAATGGCGCCATTGGAAGCCATAGACCGGTCCCAGGTCTC 1530020
Query 30285 CCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCC 30344
||||| ||||| | | || ||| |||| || || | || || || ||||||
Sbjct 1530019 CCTCTCGTCTGTGGCCCAGCCCGGCCTTTTCCAGGAACTCCTTAGATCCATTTCCGTCCC 1529960
Query 30345 AGATCTTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACA 30404
|||| | | ||||| || | |||| || ||| | || || |||||||
Sbjct 1529959 AGATGTGAATGTTTTTCTCGCTCAGTTTTTTGCCGTCGGTGCATCCAGCCACAAACCACA 1529900
Query 30405 GCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30458
|||||||||| ||| | | ||||| | |||||| ||||| |||||||
Sbjct 1529899 AAAGCTCCTCCAGAACGCCTCGGTAGAAGACTCGCTTGGTGGTGAGCAGGGGAA 1529846
>seq4
Length=3629463
Score = 98.7 bits (108), Expect = 8e-16
Identities = 135/184 (73%), Gaps = 6/184 (3%)
Strand=Plus/Plus
Query 52729 TCGTCAAGGTGAGGCTGAGGGCCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGT 52788
|||| |||||| | || | || ||| | ||| |||| || |||||||||||||||
Sbjct 470639 TCGTTAAGGTGCGAATGCGAACCACCAAGATCCCCCAGATTGGAGACAAGTTTGCGTCGC 470698
Query 52789 -TCACGGCGCAAAAGGGGACG--TGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCG 52845
|||||| || ||||| || || | | ||| | ||| | ||||||||||| |||
Sbjct 470699 GTCACGGA-CAGAAGGGTACCATTGGTGTGACGTACCGAC--ATGAGGACATGCCGTTCT 470755
Query 52846 ACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGA 52905
| || || ||||| ||||| |||||||||||||||||||| |||| || | ||||
Sbjct 470756 CCGCCGAGGGAGTGGTCCCCGATATCATCATCAACCCCCACGCCATTCCTTCGCGTATGA 470815
Query 52906 CCGT 52909
||||
Sbjct 470816 CCGT 470819
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 406310365336644
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |