Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12]
7 sequences; 20,547,992 total letters
Query= NC_029692.1
Length=362276
Score E
Sequences producing significant alignments: (Bits) Value
seq6 190 5e-43
seq5 138 3e-27
>seq6
Length=4002965
Score = 190 bits (210), Expect = 5e-43
Identities = 176/223 (79%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
||||||| ||||| || || ||||||||||| || |||||||| || || | ||||||
Sbjct 1337574 CGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTT 1337515
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| || || || |||||||| || ||||||||||| || || ||||| || |||| |||
Sbjct 1337514 CGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCC 1337455
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||||||||||||||| || ||||| ||||||||||| || || ||||||||
Sbjct 1337454 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGG 1337395
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTT 211116
||||| ||||| || || || ||||| ||||| | ||||||||
Sbjct 1337394 GTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1337352
Score = 167 bits (184), Expect = 5e-36
Identities = 169/220 (77%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
|| |||| || || || || ||||||||||| || |||||||| || || | ||| ||
Sbjct 1219240 CGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTT 1219181
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| || || || |||||||| || ||||||||||| || || ||||| || || | |||
Sbjct 1219180 CGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATTCCC 1219121
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073
||||||||||||||||| || ||||| || |||||||||||| || ||||||||
Sbjct 1219120 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAGG 1219061
Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCA 211113
||||| ||||| || || || ||||| ||||| | ||||
Sbjct 1219060 GTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1219021
>seq5
Length=4198534
Score = 138 bits (152), Expect = 3e-27
Identities = 158/207 (76%), Gaps = 4/207 (2%)
Strand=Plus/Minus
Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGG-GTCCTTCCATCTTCCAG 210967
|| || ||||||||||||| | | ||||| || |||| || | || ||||| || ||
Sbjct 2276751 AGATGGAGAGTGGACTCTTCT-GAATGTTTTAGTCCGGAAAGAGTTGGACCATCCTCGAG 2276693
Query 210968 CTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGAT 211027
|||||| || ||||| || || || || ||||| || |||| |||| |||||||||| ||
Sbjct 2276692 CTGCTTACCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAA-TCCT-CCTTGTCCTGAAT 2276635
Query 211028 CTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087
||| || || ||||||||||| || ||||||||||||||||| ||||||||
Sbjct 2276634 CTTGACTTGACAATTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTTCC 2276575
Query 211088 CGTGAGAGTCTTTACAAACACCTGCAT 211114
|| |||||||| || || | ||||||
Sbjct 2276574 AGTCAGAGTCTTGACGAAAATCTGCAT 2276548
Score = 118 bits (130), Expect = 2e-21
Identities = 152/202 (75%), Gaps = 6/202 (3%)
Strand=Plus/Minus
Query 210916 GAGTGGACTCTTTTTGGATGTTATAATCCGCAAGG-GTCCTTCCATCTTCC-AGCTGCTT 210973
|||||||||| || || ||||| || || | ||| || | ||||| || ||||||||
Sbjct 2277407 GAGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAAGTTCGACCATCCTCGGAGCTGCTT 2277348
Query 210974 GCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTG 211033
|| ||||| || || || || ||||| || |||| ||| ||||||||||| |||||
Sbjct 2277347 ACCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGAATCTTGGA 2277288
Query 211034 TTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC-TTTCCCGTGA 211092
|| | || ||||||||||| || |||||||||| || ||| ||| ||||| || |
Sbjct 2277287 CTTTA-ATTGTCGATGGTGTCGGAAGACTCAACCTCGA-AG-GATGGTCTTTTCCAGTCA 2277231
Query 211093 GAGTCTTTACAAACACCTGCAT 211114
||||||| || || | ||||||
Sbjct 2277230 GAGTCTTGACGAAAATCTGCAT 2277209
Score = 113 bits (124), Expect = 1e-19
Identities = 164/222 (74%), Gaps = 11/222 (5%)
Strand=Plus/Minus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
|| |||| || || || || ||||||||||| || || ||||| || || | ||| ||
Sbjct 2277201 CGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAG-AAGAGTT 2277143
Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013
| ||||| || |||||||| || || || || || || || |||| || ||| | |||
Sbjct 2277142 CGGCCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTTCGGGGGATC-CCT 2277084
Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGAT-GGTGTCAGAGCTTTCAACCTCGAG 211072
||||||||||| ||||| || || || ||||| |||||| || | |||| ||||||
Sbjct 2277083 TCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGGTGTC-GAAC--TCAA-CTCGAG 2277028
Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114
||||| | ||||| || || ||||| || || | ||||||
Sbjct 2277027 AGTGA---TGTTTCCAGTCAG-GTCTTGACGAAAATCTGCAT 2276990
Score = 102 bits (112), Expect = 2e-16
Identities = 161/220 (73%), Gaps = 12/220 (5%)
Strand=Plus/Minus
Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953
|| |||| || || || || ||| ||||||| || |||||||| | | | ||| ||
Sbjct 2277646 CGGAGTCGAAGAACGAGATGGAGA-TGGACTCCTTCTGGATGTTTT---CGGAAAGAGTT 2277591
Query 210954 -CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012
| ||||| || |||||| || || || || | || || ||||| || ||| | ||
Sbjct 2277590 TCGGCCATCCTCG-GCTGCT--CCAGCAAAAATCAT-CGCTGCTGGTCGGG-GGATC-CC 2277537
Query 211013 TTCCTTGTCCTGGA-TCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071
||||||||||| || |||| || || || ||||||||||| || ||||||||||
Sbjct 2277536 TTCCTTGTCCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGA 2277477
Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTG 211111
||||||| |||||||| || |||||||| || || | |||
Sbjct 2277476 GAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTG 2277437
Score = 100 bits (110), Expect = 7e-16
Identities = 135/183 (74%), Gaps = 10/183 (5%)
Strand=Plus/Minus
Query 210924 TCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAG 210983
||| |||| ||||| || || | ||| | | ||||| || |||||||| || |||||
Sbjct 2276955 TCTCTTTGAATGTTGTAGTCGGAAAG--TTCGACCATCCTCGAGCTGCTTACCAGCGAAA 2276898
Query 210984 ATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTT 211043
|| || || ||||| || |||| |||| |||||||||| ||||| || ||
Sbjct 2276897 ATCAGC---TGCTGGTCCGGGGGAA-TCCTCCCTTGTCCTGAATCTTGACTTGA---TTG 2276845
Query 211044 TCGATGGTGTCAGAGCTTTCAACCTCGAGAG-TGATCGTCTTTCCCGTGAGAGTCTTTAC 211102
||||||||||| || ||||||||||||| |||| || ||||| || |||||||| ||
Sbjct 2276844 TCGATGGTGTCGGAAGACTCAACCTCGAGAGTTGATGGTTTTTCCAGTCAGAGTCTTGAC 2276785
Query 211103 AAA 211105
||
Sbjct 2276784 GAA 2276782
Score = 91.5 bits (100), Expect = 3e-13
Identities = 142/196 (72%), Gaps = 9/196 (5%)
Strand=Plus/Minus
Query 210920 GGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGC 210979
|| ||| || || ||||| || || | |||| | ||||| || |||||||| ||
Sbjct 2276516 GGGCTCCTTCTGAATGTTGTAGTCGGAAAGG---CAACCATCCTCGAGCTGCTTACCCAG 2276460
Query 210980 GAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT-TTGTTTCA 211038
|| || || || || ||||| || |||| ||| ||||||||||| ||||| ||| |
Sbjct 2276459 AAAAATCAGTCGCTGCTGGTCCGG-GGAATTCCCTCCTTGTCCTGAATCTTGGACTTTGA 2276401
Query 211039 CGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCT 211098
| || || || |||||||| ||| |||| ||||||| || ||||| || |||||||
Sbjct 2276400 CATTATCAATAGTGTCAGAAGACTCA--CTCG-GAGTGATGGT-TTTCCAGTCAGAGTCT 2276345
Query 211099 TTACAAACACCTGCAT 211114
| || || | ||||||
Sbjct 2276344 TGACGAAAATCTGCAT 2276329
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1159151896038555
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |