Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq6 190 5e-43 seq5 138 3e-27 >seq6 Length=4002965 Score = 190 bits (210), Expect = 5e-43 Identities = 176/223 (79%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 ||||||| ||||| || || ||||||||||| || |||||||| || || | |||||| Sbjct 1337574 CGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTT 1337515 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || || |||||||| || ||||||||||| || || ||||| || |||| ||| Sbjct 1337514 CGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCC 1337455 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || ||||| ||||||||||| || || |||||||| Sbjct 1337454 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGG 1337395 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTT 211116 ||||| ||||| || || || ||||| ||||| | |||||||| Sbjct 1337394 GTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1337352 Score = 167 bits (184), Expect = 5e-36 Identities = 169/220 (77%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||| || || || || ||||||||||| || |||||||| || || | ||| || Sbjct 1219240 CGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTT 1219181 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | || || || |||||||| || ||||||||||| || || ||||| || || | ||| Sbjct 1219180 CGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATTCCC 1219121 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 ||||||||||||||||| || ||||| || |||||||||||| || |||||||| Sbjct 1219120 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAGG 1219061 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCA 211113 ||||| ||||| || || || ||||| ||||| | |||| Sbjct 1219060 GTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1219021 >seq5 Length=4198534 Score = 138 bits (152), Expect = 3e-27 Identities = 158/207 (76%), Gaps = 4/207 (2%) Strand=Plus/Minus Query 210909 AGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGG-GTCCTTCCATCTTCCAG 210967 || || ||||||||||||| | | ||||| || |||| || | || ||||| || || Sbjct 2276751 AGATGGAGAGTGGACTCTTCT-GAATGTTTTAGTCCGGAAAGAGTTGGACCATCCTCGAG 2276693 Query 210968 CTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGAT 211027 |||||| || ||||| || || || || ||||| || |||| |||| |||||||||| || Sbjct 2276692 CTGCTTACCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAA-TCCT-CCTTGTCCTGAAT 2276635 Query 211028 CTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCC 211087 ||| || || ||||||||||| || ||||||||||||||||| |||||||| Sbjct 2276634 CTTGACTTGACAATTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTTCC 2276575 Query 211088 CGTGAGAGTCTTTACAAACACCTGCAT 211114 || |||||||| || || | |||||| Sbjct 2276574 AGTCAGAGTCTTGACGAAAATCTGCAT 2276548 Score = 118 bits (130), Expect = 2e-21 Identities = 152/202 (75%), Gaps = 6/202 (3%) Strand=Plus/Minus Query 210916 GAGTGGACTCTTTTTGGATGTTATAATCCGCAAGG-GTCCTTCCATCTTCC-AGCTGCTT 210973 |||||||||| || || ||||| || || | ||| || | ||||| || |||||||| Sbjct 2277407 GAGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAAGTTCGACCATCCTCGGAGCTGCTT 2277348 Query 210974 GCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTG 211033 || ||||| || || || || ||||| || |||| ||| ||||||||||| ||||| Sbjct 2277347 ACCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGAATCTTGGA 2277288 Query 211034 TTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC-TTTCCCGTGA 211092 || | || ||||||||||| || |||||||||| || ||| ||| ||||| || | Sbjct 2277287 CTTTA-ATTGTCGATGGTGTCGGAAGACTCAACCTCGA-AG-GATGGTCTTTTCCAGTCA 2277231 Query 211093 GAGTCTTTACAAACACCTGCAT 211114 ||||||| || || | |||||| Sbjct 2277230 GAGTCTTGACGAAAATCTGCAT 2277209 Score = 113 bits (124), Expect = 1e-19 Identities = 164/222 (74%), Gaps = 11/222 (5%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||| || || || || ||||||||||| || || ||||| || || | ||| || Sbjct 2277201 CGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAG-AAGAGTT 2277143 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 | ||||| || |||||||| || || || || || || || |||| || ||| | ||| Sbjct 2277142 CGGCCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTTCGGGGGATC-CCT 2277084 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGAT-GGTGTCAGAGCTTTCAACCTCGAG 211072 ||||||||||| ||||| || || || ||||| |||||| || | |||| |||||| Sbjct 2277083 TCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGGTGTC-GAAC--TCAA-CTCGAG 2277028 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| | ||||| || || ||||| || || | |||||| Sbjct 2277027 AGTGA---TGTTTCCAGTCAG-GTCTTGACGAAAATCTGCAT 2276990 Score = 102 bits (112), Expect = 2e-16 Identities = 161/220 (73%), Gaps = 12/220 (5%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 || |||| || || || || ||| ||||||| || |||||||| | | | ||| || Sbjct 2277646 CGGAGTCGAAGAACGAGATGGAGA-TGGACTCCTTCTGGATGTTTT---CGGAAAGAGTT 2277591 Query 210954 -CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||||| || |||||| || || || || | || || ||||| || ||| | || Sbjct 2277590 TCGGCCATCCTCG-GCTGCT--CCAGCAAAAATCAT-CGCTGCTGGTCGGG-GGATC-CC 2277537 Query 211013 TTCCTTGTCCTGGA-TCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGA 211071 ||||||||||| || |||| || || || ||||||||||| || |||||||||| Sbjct 2277536 TTCCTTGTCCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGA 2277477 Query 211072 GAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTG 211111 ||||||| |||||||| || |||||||| || || | ||| Sbjct 2277476 GAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTG 2277437 Score = 100 bits (110), Expect = 7e-16 Identities = 135/183 (74%), Gaps = 10/183 (5%) Strand=Plus/Minus Query 210924 TCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAG 210983 ||| |||| ||||| || || | ||| | | ||||| || |||||||| || ||||| Sbjct 2276955 TCTCTTTGAATGTTGTAGTCGGAAAG--TTCGACCATCCTCGAGCTGCTTACCAGCGAAA 2276898 Query 210984 ATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTT 211043 || || || ||||| || |||| |||| |||||||||| ||||| || || Sbjct 2276897 ATCAGC---TGCTGGTCCGGGGGAA-TCCTCCCTTGTCCTGAATCTTGACTTGA---TTG 2276845 Query 211044 TCGATGGTGTCAGAGCTTTCAACCTCGAGAG-TGATCGTCTTTCCCGTGAGAGTCTTTAC 211102 ||||||||||| || ||||||||||||| |||| || ||||| || |||||||| || Sbjct 2276844 TCGATGGTGTCGGAAGACTCAACCTCGAGAGTTGATGGTTTTTCCAGTCAGAGTCTTGAC 2276785 Query 211103 AAA 211105 || Sbjct 2276784 GAA 2276782 Score = 91.5 bits (100), Expect = 3e-13 Identities = 142/196 (72%), Gaps = 9/196 (5%) Strand=Plus/Minus Query 210920 GGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGC 210979 || ||| || || ||||| || || | |||| | ||||| || |||||||| || Sbjct 2276516 GGGCTCCTTCTGAATGTTGTAGTCGGAAAGG---CAACCATCCTCGAGCTGCTTACCCAG 2276460 Query 210980 GAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTT-TTGTTTCA 211038 || || || || || ||||| || |||| ||| ||||||||||| ||||| ||| | Sbjct 2276459 AAAAATCAGTCGCTGCTGGTCCGG-GGAATTCCCTCCTTGTCCTGAATCTTGGACTTTGA 2276401 Query 211039 CGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCT 211098 | || || || |||||||| ||| |||| ||||||| || ||||| || ||||||| Sbjct 2276400 CATTATCAATAGTGTCAGAAGACTCA--CTCG-GAGTGATGGT-TTTCCAGTCAGAGTCT 2276345 Query 211099 TTACAAACACCTGCAT 211114 | || || | |||||| Sbjct 2276344 TGACGAAAATCTGCAT 2276329 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159151896038555