Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12]
7 sequences; 20,547,992 total letters
Query= NC_030230.1
Length=372707
Score E
Sequences producing significant alignments: (Bits) Value
seq6 145 2e-29
seq5 105 2e-17
>seq6
Length=4002965
Score = 145 bits (160), Expect = 2e-29
Identities = 164/220 (75%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| |||| ||| || || ||||||||||| || || |||| ||||| |||| | ||||
Sbjct 1219240 CGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTT 1219181
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| || || || |||||||| || |||||||||||||| || ||||| || || || ||
Sbjct 1219180 CGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATTCCC 1219121
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|||||||| |||||||| ||| || || |||||||| |||| ||||| || |
Sbjct 1219120 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAGG 1219061
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCA 225712
||||| |||||||| || | || || | || | |||||
Sbjct 1219060 GTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1219021
Score = 145 bits (160), Expect = 2e-29
Identities = 166/223 (74%), Gaps = 0/223 (0%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
||||||| |||||| || ||||||||||| || || |||| ||||| || | | |||
Sbjct 1337574 CGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTT 1337515
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| || || || |||||||| || |||||||||||||| || ||||| || ||||| ||
Sbjct 1337514 CGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCC 1337455
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672
|||||||| |||||||| ||| || ||||||||||| || | ||||| || |
Sbjct 1337454 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGG 1337395
Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTT 225715
||||| ||||| || || | || || | || | |||||||
Sbjct 1337394 GTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1337352
>seq5
Length=4198534
Score = 105 bits (116), Expect = 2e-17
Identities = 152/208 (73%), Gaps = 6/208 (3%)
Strand=Plus/Minus
Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAA-AGTTCTCCCATCTTCTAG 225566
|| ||||||||||| |||| | | | || || || | || |||| ||||| || ||
Sbjct 2276751 AGATGGAGAGTGGACTCTTCT-GAATGTTTTAGTCCGGAAAGAGTTGGACCATCCTCGAG 2276693
Query 225567 CTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGAT 225626
|||||| |||||||| || ||||| || ||||| || ||||| | |||||||| || ||
Sbjct 2276692 CTGCTTACCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATCC--TCCTTGTCCTGAAT 2276635
Query 225627 CTTTTGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685
||| ||| ||| | ||||||||||| || | || || || | ||||| ||||| |
Sbjct 2276634 CTTGA-CTTGACAATTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTTC 2276576
Query 225686 CCGTCAAAGTTTTTATGAACACTTGCAT 225713
| |||| ||| || | ||| | |||||
Sbjct 2276575 CAGTCAGAGTCTTGACGAAAATCTGCAT 2276548
Score = 93.3 bits (102), Expect = 1e-13
Identities = 120/162 (74%), Gaps = 3/162 (2%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| |||| || || || ||||||||||| || || || | ||||| || | | ||||
Sbjct 2277201 CGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAGA-AGAGTT 2277143
Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612
| ||||| || |||||||| ||||| || || ||||| || |||| || ||| | |||
Sbjct 2277142 CGGCCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTTCGGGGGA-TCCCT 2277084
Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGAT-GGTGTC 225653
|||||||| || ||||| ||| ||| ||||| ||||||
Sbjct 2277083 TCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGGTGTC 2277042
Score = 87.8 bits (96), Expect = 4e-12
Identities = 160/224 (71%), Gaps = 13/224 (6%)
Strand=Plus/Minus
Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552
|| |||| || || || |||||| |||| || || |||| ||| |||| | ||||
Sbjct 2277646 CGGAGTCGAAGAACGAGATGGAGA-TGGACTCCTTCTGGA---TGTTTTCGGAAAGAGTT 2277591
Query 225553 -CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611
| ||||| || |||||| ||||| || || | ||| || |||||||| | || ||
Sbjct 2277590 TCGGCCATCCTCG-GCTGCT--CCAGCAAAAATCA-TCGCTGCTGGTCGGGGG--ATCCC 2277537
Query 225612 TTCCTTGTC-TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670
||||||||| ||| ||||| ||| ||| ||||||||||| || | || || || |
Sbjct 2277536 TTCCTTGTCCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGA 2277477
Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACA-CTTGCAT 225713
||||| ||||| || |||| ||| || | ||| | || ||||
Sbjct 2277476 GAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGGCAT 2277433
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1192531093044858
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |