Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq6 145 2e-29 seq5 105 2e-17 >seq6 Length=4002965 Score = 145 bits (160), Expect = 2e-29 Identities = 164/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || |||| ||| || || ||||||||||| || || |||| ||||| |||| | |||| Sbjct 1219240 CGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTT 1219181 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||||||||| || ||||| || || || || Sbjct 1219180 CGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATTCCC 1219121 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||| || || |||||||| |||| ||||| || | Sbjct 1219120 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAGG 1219061 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCA 225712 ||||| |||||||| || | || || | || | ||||| Sbjct 1219060 GTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1219021 Score = 145 bits (160), Expect = 2e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 ||||||| |||||| || ||||||||||| || || |||| ||||| || | | ||| Sbjct 1337574 CGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTT 1337515 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || |||||||| || |||||||||||||| || ||||| || ||||| || Sbjct 1337514 CGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCC 1337455 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| |||||||| ||| || ||||||||||| || | ||||| || | Sbjct 1337454 TCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGG 1337395 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCATTT 225715 ||||| ||||| || || | || || | || | ||||||| Sbjct 1337394 GTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1337352 >seq5 Length=4198534 Score = 105 bits (116), Expect = 2e-17 Identities = 152/208 (73%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 225508 AGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAA-AGTTCTCCCATCTTCTAG 225566 || ||||||||||| |||| | | | || || || | || |||| ||||| || || Sbjct 2276751 AGATGGAGAGTGGACTCTTCT-GAATGTTTTAGTCCGGAAAGAGTTGGACCATCCTCGAG 2276693 Query 225567 CTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCTTGGAT 225626 |||||| |||||||| || ||||| || ||||| || ||||| | |||||||| || || Sbjct 2276692 CTGCTTACCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATCC--TCCTTGTCCTGAAT 2276635 Query 225627 CTTTTGCTTCACAGCT-TCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTCTTGC 225685 ||| ||| ||| | ||||||||||| || | || || || | ||||| ||||| | Sbjct 2276634 CTTGA-CTTGACAATTGTCGATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTTTC 2276576 Query 225686 CCGTCAAAGTTTTTATGAACACTTGCAT 225713 | |||| ||| || | ||| | ||||| Sbjct 2276575 CAGTCAGAGTCTTGACGAAAATCTGCAT 2276548 Score = 93.3 bits (102), Expect = 1e-13 Identities = 120/162 (74%), Gaps = 3/162 (2%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || |||| || || || ||||||||||| || || || | ||||| || | | |||| Sbjct 2277201 CGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAGA-AGAGTT 2277143 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | ||||| || |||||||| ||||| || || ||||| || |||| || ||| | ||| Sbjct 2277142 CGGCCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTTCGGGGGA-TCCCT 2277084 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGAT-GGTGTC 225653 |||||||| || ||||| ||| ||| ||||| |||||| Sbjct 2277083 TCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGGTGTC 2277042 Score = 87.8 bits (96), Expect = 4e-12 Identities = 160/224 (71%), Gaps = 13/224 (6%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || |||| || || || |||||| |||| || || |||| ||| |||| | |||| Sbjct 2277646 CGGAGTCGAAGAACGAGATGGAGA-TGGACTCCTTCTGGA---TGTTTTCGGAAAGAGTT 2277591 Query 225553 -CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACC 225611 | ||||| || |||||| ||||| || || | ||| || |||||||| | || || Sbjct 2277590 TCGGCCATCCTCG-GCTGCT--CCAGCAAAAATCA-TCGCTGCTGGTCGGGGG--ATCCC 2277537 Query 225612 TTCCTTGTC-TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTA 225670 ||||||||| ||| ||||| ||| ||| ||||||||||| || | || || || | Sbjct 2277536 TTCCTTGTCCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAACCTCGA 2277477 Query 225671 ACGTGATCGTCTTGCCCGTCAAAGTTTTTATGAACA-CTTGCAT 225713 ||||| ||||| || |||| ||| || | ||| | || |||| Sbjct 2277476 GAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGGCAT 2277433 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1192531093044858