Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_030394.2 Length=126965 Score E Sequences producing significant alignments: (Bits) Value seq3 125 6e-24 seq4 89.7 4e-13 >seq3 Length=3366276 Score = 125 bits (138), Expect = 6e-24 Identities = 383/596 (64%), Gaps = 23/596 (4%) Strand=Plus/Minus Query 29654 TCCACGTGGTCAAGGTAGACGTGAGCATCTCCCAGGGTGTGGACAAACTCTCCCGGTTCT 29713 |||||||| || ||| || || || ||||||| |||||| | | |||||| || Sbjct 1530437 TCCACGTGATCCTTGTACACATGGGCGTCTCCCATGGTGTGAATGAGCTCTCCACAGTCC 1530378 Query 29714 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGC 29773 | ||||||| || || ||||| ||||| |||| |||| ||| ||||| ||||| Sbjct 1530377 AAATCGGTGACCTGGGCAATCATTCGGGTGAGCAGAGCGTAGGAGGCAATGTTGAAGGGG 1530318 Query 29774 ACCCCGAGCCCCATGTCCCCTGACCTCTGGTAGAGCTGGCACGAGAG-----CTC--TCC 29826 || || || |||| ||| | ||| | ||| || ||||| ||||| || ||| ||| Sbjct 1530317 ACTCCAAGACCCAGGTCACATGATCGCTGATACAGCTGACACGACAGACGTCCTCGTTCC 1530258 Query 29827 GTCGCT--------CACGTAAAACTGACA---CATGGCATGGCACGGAGGAAGGGCCATG 29875 | | ||| |||||||| || |||| || || |||||||| ||||| Sbjct 1530257 GAGTTTTTGTACGACACATAAAACTGGCAAAACATG---TGACAGGGAGGAAGCGCCATC 1530201 Query 29876 AGACCCAAGTCTTTGGGGTTCCAGGCACACACGATGATGCGCCTGTCTTCTGGGTTGTTC 29935 | || ||||||||| ||| ||| ||||| || | ||| | |||||| | Sbjct 1530200 TTTGGGAGATCGGCGGGGTTCCATGCAGACAGAATGATTCGACGGTCGTGAGGGTTGGTT 1530141 Query 29936 CTGATGAG-GTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGNNNN 29994 |||| ||| || | | | || ||||| ||||| || || | ||| || | Sbjct 1530140 CTGA-GAGTGTGTATCACCTGTTTGAGCTGGTCCACGCCTTGGCCAGTGTAATCCGTGTC 1530082 Query 29995 NNNNNNNNNNNNNNNNNNNNCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30054 ||||||| | ||| ||||| || || |||||||||||||| Sbjct 1530081 ACAATTCTTGTACTCGGCTCCGAAATGGCGCCATTGGAAGCCATAGACCGGTCCCAGGTC 1530022 Query 30055 TCCCTCTTCCCTGTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTC 30114 ||||||| ||||| | | || ||| |||| || || | || || || |||| Sbjct 1530021 TCCCTCTCGTCTGTGGCCCAGCCCGGCCTTTTCCAGGAACTCCTTAGATCCATTTCCGTC 1529962 Query 30115 CCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCA 30174 |||||| | | |||||| || | |||| || ||| | || || ||||| Sbjct 1529961 CCAGATGTGAATGTTTTTCTCGCTCAGTTTTTTGCCGTCGGTGCATCCAGCCACAAACCA 1529902 Query 30175 CAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30230 || |||||||||| ||| | | ||||| | |||||| ||||| ||||||| Sbjct 1529901 CAAAAGCTCCTCCAGAACGCCTCGGTAGAAGACTCGCTTGGTGGTGAGCAGGGGAA 1529846 >seq4 Length=3629463 Score = 89.7 bits (98), Expect = 4e-13 Identities = 133/184 (72%), Gaps = 6/184 (3%) Strand=Plus/Plus Query 53493 TCGTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCATC-C 53551 |||| |||||| | || | ||| ||| | ||| |||| || ||||||||||| || | Sbjct 470639 TCGTTAAGGTGCGAATGCGAACCACCAAGATCCCCCAGATTGGAGACAAGTTTGCGTCGC 470698 Query 53552 TTCACGGCGCAAAAGGGGACATGCGGAGCG--GTCCTGACTCAGGAGGACATGCCCTTCG 53609 |||||| || ||||| || || | | || | ||| | ||||||||||| ||| Sbjct 470699 GTCACGGA-CAGAAGGGTACCATTGGTGTGACGTACCGAC--ATGAGGACATGCCGTTCT 470755 Query 53610 ACAAGGACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGA 53669 | || || ||||| ||||| |||||||||||||||||||| |||| || | |||| Sbjct 470756 CCGCCGAGGGAGTGGTCCCCGATATCATCATCAACCCCCACGCCATTCCTTCGCGTATGA 470815 Query 53670 CGGT 53673 | || Sbjct 470816 CCGT 470819 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 406163165349202