Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq6 197 2e-45 seq2 161 1e-34 >seq6 Length=4002965 Score = 197 bits (218), Expect = 2e-45 Identities = 380/558 (68%), Gaps = 2/558 (0%) Strand=Plus/Minus Query 77916 TATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGGCAC 77975 || ||| | | ||| ||||| || | || || || | || ||||| || || |||||| Sbjct 3934149 TACAGCTGCTTAAACTCATCACCATAGACGTCGTCAAGACCGGGGCACTCGTTGGGGCAC 3934090 Query 77976 ATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCATAGA 78035 |||| | ||| ||| | | | || ||||| | ||| || || || || ||||| ||| Sbjct 3934089 ATCAGGGTCCATTCAGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGATCCACAGA 3934030 Query 78036 GCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTATTCTTTTTAAGATCGAGA 78095 || | || || ||||||| || | ||||| ||||| |||||| || ||| Sbjct 3934029 GCCAGGAACAGGTCTCGGGCTCGAATCTCTTCCTTTCCGTGGTTCTTTCGCAGCTCGCAG 3933970 Query 78096 AACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCCATAACTCCAGGTCGTTTA 78155 ||||| | ||||| ||||| || || || || ||||| | | |||||||| || Sbjct 3933969 AACTCGAAGATATCGTCGTGCCAGGGCTCAAGGTACATTGCAAAGGCACCAGGTCGCTTG 3933910 Query 78156 TTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATA 78215 || ||||||||||| | |||| ||||||||| ||||| || | || ||| || | ||| Sbjct 3933909 TTGCCTCCCTGATCAACGTATCGGGCGGTGTTGTTATAGACACGCAGCATGGGCACGATA 3933850 Query 78216 CCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATG 78275 ||||| || ||||| || ||||||| ||| || ||| | || || || || || Sbjct 3933849 CCGTTGGAGGTTCCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCTCGGATGTTGTGGATA 3933790 Query 78276 GATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAG 78335 || | || || || || || ||| || || ||||| || ||| | ||||||||| Sbjct 3933789 GACAGACCGATACCGCCGGCAGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAG 3933730 Query 78336 ATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGA 78395 || || || || ||| ||| ||||||| | ||| ||||| ||||| ||| | || Sbjct 3933729 ATGCCGTCGATGGAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGAGGCTGG 3933670 Query 78396 ACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGA-AAGTAG 78454 |||||| || || | | || || || || || || || | || | ||| | ||| Sbjct 3933669 GGAGTTCCGGCGTTGTAGAGAGTGGGGGAAGCGTGAGTGAAGTACTTCTGAGACATATAG 3933610 Query 78455 ATTGTATGTTTCAATAGC 78472 ||||| || ||||| || Sbjct 3933609 -TTGTAGGTCTCAATGGC 3933593 >seq2 Length=3044971 Score = 161 bits (178), Expect = 1e-34 Identities = 391/588 (66%), Gaps = 8/588 (1%) Strand=Plus/Plus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || ||||| ||| || ||||| || |||| || | ||||| || || ||||| Sbjct 506391 CAGGCAAAGTCAGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGG 506450 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || ||||| || || || || |||||||| || || | |||||||| || || ||||| Sbjct 506451 CCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAG 506510 Query 48261 ATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAACTGG---CTTCGTTGTGT 48317 ||||| || ||||| ||||| || | |||| |||||| | ||| |||||| | Sbjct 506511 ATGCCCTCGACGGCGGCAAAGGCAATGAGTCGCTCTCCAAAGGTGGACTCTTCGTCGGAG 506570 Query 48318 ATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTA 48377 |||||| | ||||| || ||||| ||||| | || || || || || || || || Sbjct 506571 ATCCACTTGAGGGCCCAGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGCGTTG 506630 Query 48378 AAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATT 48437 || || || || || ||| || || | ||| || || || | || || | Sbjct 506631 AACAGGTAGGTTCGCTCTTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGTC 506690 Query 48438 TCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATC 48497 |||||||| || || || || ||||| || ||||| || || | || || | | | Sbjct 506691 TCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGCC 506750 Query 48498 TGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCA 48557 || ||||| | ||||| ||| ||| ||||| || || || || || |||||| Sbjct 506751 TGCACCTCGCCGGAGAATCGCTCAACCAGGTTCTCGTTAACGATACCGTCGGAGGCAGCA 506810 Query 48558 AAAAATGCTAATACATGTTTAATAAAATAT---TTTTCGTTGGA-AGTCAGTTTATTCCA 48613 || ||||| | || || || || | | |||||| |||| ||| | ||| Sbjct 506811 AAGAATGCGAGAACGTGGGAGATGAAGAACCGCTCATCGTTGTTGAGTCTGTTC-TCCCA 506869 Query 48614 GTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTT 48673 |||| || || ||| | ||| | || ||||||||||| || || ||||| || || Sbjct 506870 GTCACCCATGTCCTTTCCAAGATCAATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCTT 506929 Query 48674 TTTATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAA 48721 || ||||| | ||| || || ||| ||||| ||||| | ||||| Sbjct 506930 CTTGTACATCTGCCAGATTTCGTGGTACTGGATGGGGAAGAGCACAAA 506977 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694668739216480