Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq6 127 5e-24 seq5 93.3 1e-13 >seq6 Length=4002965 Score = 127 bits (140), Expect = 5e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945 ||||| || || ||||| ||||| ||||| || ||||||||||| |||| | ||||| Sbjct 1219238 GAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCG 1219179 Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005 || || || || || |||||||||||||| | ||||||||||| | |||||| || Sbjct 1219178 GCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATTCCCTC 1219119 Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065 ||| || || || || ||||| | || | | |||| || ||| || || || || Sbjct 1219118 CTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAGGGT 1219059 Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCA 152103 ||||| ||||| || || ||||| || |||| |||| Sbjct 1219058 GATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1219021 Score = 122 bits (134), Expect = 2e-22 Identities = 159/220 (72%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946 |||| ||||| ||||| ||||| ||||| || ||||||||||| || | | |||| Sbjct 1337571 AGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGG 1337512 Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006 || || || || || |||||||||||||| | ||||||||||| | ||||| ||| Sbjct 1337511 CCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCC 1337452 Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066 || || || || || ||||| | || | | |||| ||| ||| || || || || Sbjct 1337451 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTG 1337392 Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTT 152106 ||||| || || || || ||||| || || | |||||||| Sbjct 1337391 ATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1337352 >seq5 Length=4198534 Score = 93.3 bits (102), Expect = 1e-13 Identities = 158/221 (71%), Gaps = 6/221 (3%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAA-AGTTC 151944 ||||| ||| | ||||| ||||| ||||||| | | ||||| || || | || |||| Sbjct 2276764 GAGTCGGAGAAAGAGATGGAGAGTGGACTCTTCT-GAATGTTTTAGTCCGGAAAGAGTTG 2276706 Query 151945 TCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004 ||||| || || || || ||||| || || | ||||||||||| | || ||| | Sbjct 2276705 GACCATCCTCGAGCTGCTTACCAGCGAAAATCAGTCGCTGCTGGTCCG-GGGGAATCC-T 2276648 Query 152005 CCTTTTCTTGAATTTTTTGTTTGAC-AGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 |||| || |||| | || ||||| | | || | | |||| ||| ||| || || ||| Sbjct 2276647 CCTTGTCCTGAA-TCTTGACTTGACAATTGTCGATGGTGTCGGAAGACTCAACCTCGAGA 2276589 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || |||||||| ||||| | |||||| Sbjct 2276588 GTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 2276548 Score = 84.2 bits (92), Expect = 5e-11 Identities = 157/222 (71%), Gaps = 9/222 (4%) Strand=Plus/Minus Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTA-AAGTTC 151944 ||||| || || ||||| |||| ||||| || || |||||||| |||| | |||||| Sbjct 2277424 GAGTCGGA--ACGAGATGG-GAGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAAGTTC 2277368 Query 151945 TCCCATCTTCTAGGCTT-TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 ||||| || ||| || || ||||| || || | ||||||||||| | ||||| Sbjct 2277367 GACCATCCTCGGAGCTGCTTACCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCC 2277308 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 ||||| || ||||| || || | | | || | | |||| ||| ||| || || || Sbjct 2277307 TCCTTGTCCTGAATCTTGGACTTTA-ATTGTCGATGGTGTCGGAAGACTCAACCTC--GA 2277251 Query 152064 GTAATAGT-TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||| || || |||||||| ||||| | |||||| Sbjct 2277250 AGGATGGTCTTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 2277209 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820696516697