Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12]
7 sequences; 20,547,992 total letters
Query= NC_031465.1
Length=360610
Score E
Sequences producing significant alignments: (Bits) Value
seq6 127 5e-24
seq5 93.3 1e-13
>seq6
Length=4002965
Score = 127 bits (140), Expect = 5e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCT 151945
||||| || || ||||| ||||| ||||| || ||||||||||| |||| | |||||
Sbjct 1219238 GAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCG 1219179
Query 151946 CCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTC 152005
|| || || || || |||||||||||||| | ||||||||||| | |||||| ||
Sbjct 1219178 GCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATTCCCTC 1219119
Query 152006 CTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGT 152065
||| || || || || ||||| | || | | |||| || ||| || || || ||
Sbjct 1219118 CTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAGGGT 1219059
Query 152066 AATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCA 152103
||||| ||||| || || ||||| || |||| ||||
Sbjct 1219058 GATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1219021
Score = 122 bits (134), Expect = 2e-22
Identities = 159/220 (72%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 151887 AGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTC 151946
|||| ||||| ||||| ||||| ||||| || ||||||||||| || | | ||||
Sbjct 1337571 AGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGG 1337512
Query 151947 CCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCC 152006
|| || || || || |||||||||||||| | ||||||||||| | ||||| |||
Sbjct 1337511 CCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCC 1337452
Query 152007 TTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTA 152066
|| || || || || ||||| | || | | |||| ||| ||| || || || ||
Sbjct 1337451 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTG 1337392
Query 152067 ATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTT 152106
||||| || || || || ||||| || || | ||||||||
Sbjct 1337391 ATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1337352
>seq5
Length=4198534
Score = 93.3 bits (102), Expect = 1e-13
Identities = 158/221 (71%), Gaps = 6/221 (3%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAA-AGTTC 151944
||||| ||| | ||||| ||||| ||||||| | | ||||| || || | || ||||
Sbjct 2276764 GAGTCGGAGAAAGAGATGGAGAGTGGACTCTTCT-GAATGTTTTAGTCCGGAAAGAGTTG 2276706
Query 151945 TCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTT 152004
||||| || || || || ||||| || || | ||||||||||| | || ||| |
Sbjct 2276705 GACCATCCTCGAGCTGCTTACCAGCGAAAATCAGTCGCTGCTGGTCCG-GGGGAATCC-T 2276648
Query 152005 CCTTTTCTTGAATTTTTTGTTTGAC-AGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063
|||| || |||| | || ||||| | | || | | |||| ||| ||| || || |||
Sbjct 2276647 CCTTGTCCTGAA-TCTTGACTTGACAATTGTCGATGGTGTCGGAAGACTCAACCTCGAGA 2276589
Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || || || || || |||||||| ||||| | ||||||
Sbjct 2276588 GTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 2276548
Score = 84.2 bits (92), Expect = 5e-11
Identities = 157/222 (71%), Gaps = 9/222 (4%)
Strand=Plus/Minus
Query 151886 GAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTA-AAGTTC 151944
||||| || || ||||| |||| ||||| || || |||||||| |||| | ||||||
Sbjct 2277424 GAGTCGGA--ACGAGATGG-GAGTGGACTCCTTCTGAATGTTGTAGTCGGAAAGAAGTTC 2277368
Query 151945 TCCCATCTTCTAGGCTT-TTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003
||||| || ||| || || ||||| || || | ||||||||||| | |||||
Sbjct 2277367 GACCATCCTCGGAGCTGCTTACCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAATTCCC 2277308
Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063
||||| || ||||| || || | | | || | | |||| ||| ||| || || ||
Sbjct 2277307 TCCTTGTCCTGAATCTTGGACTTTA-ATTGTCGATGGTGTCGGAAGACTCAACCTC--GA 2277251
Query 152064 GTAATAGT-TTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104
|| || ||| || || |||||||| ||||| | ||||||
Sbjct 2277250 AGGATGGTCTTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 2277209
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1153820696516697
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |