Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12]
7 sequences; 20,547,992 total letters
Query= NC_032001.1
Length=327147
Score E
Sequences producing significant alignments: (Bits) Value
seq6 167 5e-36
seq5 116 8e-21
seq2 105 1e-17
>seq6
Length=4002965
Score = 167 bits (184), Expect = 5e-36
Identities = 175/230 (76%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || || || || || ||||| | ||| || || ||||||||||||||||
Sbjct 1337581 ACCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1337522
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || ||||| ||||| || || || ||||| ||||| | || || ||||| ||
Sbjct 1337521 AAGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 1337462
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
||| ||||||||||| |||||||| | || ||| | ||||| ||||| |||| || ||
Sbjct 1337461 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 1337402
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTT 283101
||||| ||||| |||||||| || | ||||| || || ||||||||||
Sbjct 1337401 CTCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1337352
Score = 131 bits (144), Expect = 4e-25
Identities = 165/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
||| || || || || || || ||||| | ||| || || |||||||||||||| |
Sbjct 1219247 ACCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 1219188
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || ||||| ||||| || || || ||||| ||||| | || || ||||| ||
Sbjct 1219187 AAGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 1219128
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051
|| ||||||||||| |||||||| | || ||| | || || ||||| || | || ||
Sbjct 1219127 GATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCAC 1219068
Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCA 283098
||||| ||||| ||||| || || | ||||| || || || ||||
Sbjct 1219067 CTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1219021
>seq5
Length=4198534
Score = 116 bits (128), Expect = 8e-21
Identities = 135/182 (74%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 317020 TCCTTCGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTG 317079
|||| || ||||| || || | ||||||||| |||| || | |||||| || |||||
Sbjct 1627042 TCCTGGGTGGGGAAACCCTCGACCTGACCGTTGGCAATGGCTCGCATCAGGGTGGACTTA 1626983
Query 317080 CCAGCACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTG 317139
|||||||| || || || || ||||| || || || ||| || | ||||
Sbjct 1626982 CCAGCACCGTTAGGACCACAGAGACCGTATCGTCGGCCTCGCTTGAGTCGCAGCTGGGTT 1626923
Query 317140 TTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCG 317199
|||||| ||||||||| |||| || ||||||||||||||||| | |||||| ||||||
Sbjct 1626922 CGGTTCAGCAGAATCTTAGCACCGTAAGCCAGAGAGAACTCACAGTTACACAGATCCTCG 1626863
Query 317200 CC 317201
||
Sbjct 1626862 CC 1626861
Score = 114 bits (126), Expect = 3e-20
Identities = 165/229 (72%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || || || || | ||||| | ||| |||| | | ||||| ||||| |
Sbjct 2276773 ACCACCTCGGAGTCGGAGAAAGAGATGGAGAGTGGACTCTTCT-GAATGTTTTAGTCCGG 2276715
Query 282932 AA-GCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990
|| | || | |||||||| || || || || || || |||| || || ||||| |
Sbjct 2276714 AAAGAGTTGGACCATCCTCGAGCTGCTTACCAGCGAAAATCAGTCGCTGCTGGTCCGGGG 2276655
Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
|||| |||||||||| || ||||| ||| | ||||| ||||| |||| || |
Sbjct 2276654 GAAT--CCTCCTTGTCCTGAATCTTGACTTGACAATTGTCGATGGTGTCGGAAGACTCAA 2276597
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| ||||||||||| ||||| || |||| |||||| ||||| ||||||||
Sbjct 2276596 CCTCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 2276548
Score = 111 bits (122), Expect = 3e-19
Identities = 145/192 (76%), Gaps = 9/192 (5%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
|| || || ||||||||||| | ||| || |||||||| || || || || |||
Sbjct 2276512 TCCTTCTGAATGTTGTAGTCGGAAAG---GCAACCATCCTCGAGCTGCTTACCCAGAAAA 2276456
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTG-CTTTTACGGT 283027
|||| || || ||||| | ||||| ||||||||||| || ||||| | |||| || |
Sbjct 2276455 ATCAGTCGCTGCTGGTC-CGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTTGACATT 2276397
Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087
||| |||||||| |||| || || ||| ||||||| || || || |||| |||||| ||
Sbjct 2276396 ATCAATAGTGTCAGAAGACTC-AC-TCG-GAGTGATGGT-TTTCCAGTCAGAGTCTTGAC 2276341
Query 283088 GAATATCTGCAT 283099
||| ||||||||
Sbjct 2276340 GAAAATCTGCAT 2276329
Score = 107 bits (118), Expect = 4e-18
Identities = 167/229 (73%), Gaps = 11/229 (5%)
Strand=Plus/Minus
Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931
|||||| || || || || || ||||| | ||| || || || |||||||||||||
Sbjct 2277208 ACCACCTCGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAG- 2277150
Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
||| || ||||||||||| || || || || ||||| |||| || || |||| | ||
Sbjct 2277149 AAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGT-TCGGGG 2277091
Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGAT-AGTGTCCGAAGCTTCGA 283050
|| || |||||||| || ||||| | || || | ||||| |||| |||| || |
Sbjct 2277090 GATCCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGGTGT-CGAA--CTCAA 2277034
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099
| |||||||||| | || || ||| | ||||| ||||| ||||||||
Sbjct 2277033 C-TCGAGAGTGA---TGTTTCCAGTC-AGGTCTTGACGAAAATCTGCAT 2276990
Score = 104 bits (114), Expect = 5e-17
Identities = 144/194 (74%), Gaps = 6/194 (3%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGC-GTGCGGCCATCCTCT-AGTTGTTTCCCGGCAA 282966
|| || || ||||||||||| | ||| || || |||||||| || || || || || |
Sbjct 2277399 TCCTTCTGAATGTTGTAGTCGGAAAGAAGTTCGACCATCCTCGGAGCTGCTTACCAGCGA 2277340
Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026
| |||| || || ||||| ||||| ||||||||||| || ||||| | ||||
Sbjct 2277339 AAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTTA-AT 2277281
Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTC-TTACCCGTCAAAGTCTTA 283085
| ||||| ||||| |||| || || |||| || ||| ||| || || |||| ||||||
Sbjct 2277280 TGTCGATGGTGTCGGAAGACTCAACCTCGA-AG-GATGGTCTTTTCCAGTCAGAGTCTTG 2277223
Query 283086 ACGAATATCTGCAT 283099
||||| ||||||||
Sbjct 2277222 ACGAAAATCTGCAT 2277209
Score = 98.7 bits (108), Expect = 2e-15
Identities = 163/226 (72%), Gaps = 12/226 (5%)
Strand=Plus/Minus
Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932
||||| || || ||||| || ||||| | || || || |||||||| | | | |
Sbjct 2277652 CCACCTCGGAGTCGAAGAACGAGATGGAGA-TGGACTCCTTCTGGATGTTTTCG---GAA 2277597
Query 282933 AGCGTG-CGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991
|| || ||||||||||| | || | || ||||| |||| || || ||||| ||
Sbjct 2277596 AGAGTTTCGGCCATCCTCG-GCTGCT--CCAGCAAAAATCAT-CGCTGCTGGTCGG--GG 2277543
Query 282992 AATACCCTCCTTGTC-TTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050
|| || |||||||| ||| ||||| | || || | ||||| ||||| |||| || |
Sbjct 2277542 GATCCCTTCCTTGTCCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAA 2277483
Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTG 283096
| ||||||||||| ||||| || |||| |||||| ||||| |||||
Sbjct 2277482 CCTCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTG 2277437
Score = 91.5 bits (100), Expect = 3e-13
Identities = 139/192 (72%), Gaps = 11/192 (6%)
Strand=Plus/Minus
Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968
||| |||| ||||||||||| | || || || |||||||| || || || || || ||
Sbjct 2276955 TCTCTTTGAATGTTGTAGTCGGAAA--GTTCGACCATCCTCGAGCTGCTTACCAGCGAAA 2276898
Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028
|||| | || ||||| ||||| || ||||||| || ||||| ||| |
Sbjct 2276897 ATCA---GCTGCTGGTCCGGGGGAAT-CCTCCCTTGTCCTGAATCTTGACTT---GATTG 2276845
Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAG-TGATCGTCTTACCCGTCAAAGTCTTAAC 283087
||||| ||||| |||| || || ||||||| |||| || || || |||| |||||| ||
Sbjct 2276844 TCGATGGTGTCGGAAGACTCAACCTCGAGAGTTGATGGTTTTTCCAGTCAGAGTCTTGAC 2276785
Query 283088 GAATATCTGCAT 283099
||| || |||||
Sbjct 2276784 GAAAAT-TGCAT 2276774
Score = 87.8 bits (96), Expect = 4e-12
Identities = 111/152 (73%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 315708 GAGACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTG 315767
|||| ||||| |||| | ||||||| ||||||||||| ||||| | |||||| | ||
Sbjct 1628382 GAGAGTCTCGA--TCCAGATAGTTGGTAGGCTCATCAAGGACGATAAGATGGGGTCGCTG 1628325
Query 315768 CCATAGAGCGGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCG 315827
||| | |||| | | || ||||| | || || ||||||||||| || ||||| ||
Sbjct 1628324 CCAGGTACAGGCGGCAAGCACAAGCTTGACCTTCTGACCACCAGACAGACCTCGGATTCG 1628265
Query 315828 AGAATGAGTGGTAAATTCTGGGTCAAGGCCAA 315859
||| |||| | || || || || || ||||
Sbjct 1628264 AGAGTGAGAGACAAGCTCGGGCTCGAGACCAA 1628233
>seq2
Length=3044971
Score = 105 bits (116), Expect = 1e-17
Identities = 566/889 (64%), Gaps = 23/889 (3%)
Strand=Plus/Minus
Query 229535 CTTCCCTATTCAATACCCCGACCTCTGGGATATGTATAAGAAGGCGGTGGCAACCTTTTG 229594
|||||| || || |||| ||| ||||| | ||||| |||||||| | ||| | || ||
Sbjct 506969 CTTCCCCATCCAGTACCACGAAATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTG 506910
Query 229595 GACCACGGAGGAAGTCCCCCTA--AATGCAGACGTCGTCGACTGGCGCGAGAA---ACTC 229649
||| | ||||| | || || | ||| | | |||||| ||||| ||||
Sbjct 506909 GACAGCTGAGGAGATTGATCTTGGAAAG--GACATGGGTGACTGG---GAGAACAGACTC 506855
Query 229650 AACGACGATGAACGCCATTTCATCAAGCACATTCTCGGGTTTTTTGCAGGTTCCGACGGT 229709
||| ||||||| || |||||| ||| |||||| || ||||| | |||||||||
Sbjct 506854 AACAACGATGAGCGGTTCTTCATCTCCCACGTTCTCGCATTCTTTGCTGCCTCCGACGGT 506795
Query 229710 ATCGTGATGGAAAACTTGCA-GACTAACTTCAGCGTCGAAGTAACGGTCCCAGAGGCACG 229768
||||| | || ||| || || | ||| || ||| || || ||| |||||
Sbjct 506794 ATCGTTAACGAGAACCTGGTTGAGCGA-TTCTCCGGCGAGGTGCAGGCCCCCGAGGCCAA 506736
Query 229769 GCAGTTTTACGCATACCAGACGTTCAATGAATCTGTTCATTCGGAACAGTATGCCCTTCT 229828
| || |||| | ||||| | | || | || || || || | || ||
Sbjct 506735 GTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCGCTGCT 506676
Query 229829 TATTGACGCGCTCATTTCCGACGAGCGAGAGCGTGCCGAACTGTTCGACGCCATCGAAAA 229888
|| ||| | ||| ||| |||||| || | |||||| |||||||||| |
Sbjct 506675 GATCGACACATACATCAAGGACCCCAAAGAGCGAACCTACCTGTTCAACGCCATCGAGAC 506616
Query 229889 CATCCCGGCGGTCCATAACAAAGCGCGTTGGGCTCAGAAGTGG--CTGGAACCCAG--TA 229944
|||||| || | || || || ||||| | |||||| || || || |
Sbjct 506615 CATCCCCTGCATCAAGAAAAAGGCCGACTGGGCCCTCAAGTGGATCTCCGACGAAGAGTC 506556
Query 229945 AATCGTTTGCAGAGCGTCTCGTCGCGTGGGTGTGCGTTGAGGGTATTCTGTTCTCCGGGA 230004
| | |||| |||||| ||| | || | | ||| ||||| || | ||||||||
Sbjct 506555 CACC-TTTGGAGAGCGACTCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCT 506497
Query 230005 GTTTCTGCGCCATCTTTTGGCT-ACGCAACAAGGGCGTCATGCCCGGGCTCGGTCTGTCG 230063
|||| | ||||||| ||||| | | | | ||| | ||||||| || ||| | ||
Sbjct 506496 CTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTC-TCATGCCTGGCCTCACCTTCTCC 506438
Query 230064 AACGAATTCATCAGCAGGGACGAAGGTCTTCACCAGCAATTTGGCGAGGTCTTGTATTCG 230123
||||| ||||| | | ||||| ||||| ||| | |||| | | | | |||
Sbjct 506437 AACGAGCTCATCTCCCGAGACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTTTTCTCG 506378
Query 230124 AAGCTAAATAACAAACTACCTTTC-GAA-ACGGTGAAACAAATCGTCACAGAAGTAGTTG 230181
| || | ||| || ||| ||| | || | | || | || | ||||
Sbjct 506377 CACCTTGAGAACCGAC--CCTCAAAGAAGATTGTTGAGGACGTCATTGTCGAGGCTGTTG 506320
Query 230182 CAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTG 230241
| || |||||||| || |||||| | || || |||| | || ||||| ||
Sbjct 506319 GCATCGAGCAGGAGTTCCTTACTGACGCTCTGCCCTGTGGTCTGCTTGGTATGAACGCCA 506260
Query 230242 ATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACG 230301
| || ||| | || || ||||| || || ||||| ||| | | || || || || ||
Sbjct 506259 AGCTGATGTGCCAGTACATCGAGTTTGTCGCTGACCGTCTGCTAGTTGCTCTCGGTAACT 506200
Query 230302 AGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGA 230361
|| ||||||||||||| |||||||||| || |||||| ||| || || || |
Sbjct 506199 CCAAGGTGTATAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGCCGGCA 506140
Query 230362 AAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410
| || ||||| ||||| ||||| || ||| || || | | |||||||
Sbjct 506139 AGACCAACTTTTTCGAGAAGCGAGTGTCCGACTACCAGAAGGCCGGTGT 506091
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1046739106120578
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