Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq6 167 5e-36 seq5 116 8e-21 seq2 105 1e-17 >seq6 Length=4002965 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || || ||||| | ||| || || |||||||||||||||| Sbjct 1337581 ACCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGA 1337522 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||| ||||| || || || ||||| ||||| | || || ||||| || Sbjct 1337521 AAGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 1337462 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 ||| ||||||||||| |||||||| | || ||| | ||||| ||||| |||| || || Sbjct 1337461 AATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCAC 1337402 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCATTT 283101 ||||| ||||| |||||||| || | ||||| || || |||||||||| Sbjct 1337401 CTCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1337352 Score = 131 bits (144), Expect = 4e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 ||| || || || || || || ||||| | ||| || || |||||||||||||| | Sbjct 1219247 ACCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGA 1219188 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||| ||||| || || || ||||| ||||| | || || ||||| || Sbjct 1219187 AAGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGG 1219128 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| |||||||| | || ||| | || || ||||| || | || || Sbjct 1219127 GATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCAC 1219068 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCA 283098 ||||| ||||| ||||| || || | ||||| || || || |||| Sbjct 1219067 CTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1219021 >seq5 Length=4198534 Score = 116 bits (128), Expect = 8e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 317020 TCCTTCGTCGGGAACCCTTCCAACTGACCGTTCACAATCGCCCTCATCAGTGTCGACTTG 317079 |||| || ||||| || || | ||||||||| |||| || | |||||| || ||||| Sbjct 1627042 TCCTGGGTGGGGAAACCCTCGACCTGACCGTTGGCAATGGCTCGCATCAGGGTGGACTTA 1626983 Query 317080 CCAGCACCATTGGGGCCGCAAAGACCATACCGATTTCCCTTCTTCAGATTAAAACGGGTG 317139 |||||||| || || || || ||||| || || || ||| || | |||| Sbjct 1626982 CCAGCACCGTTAGGACCACAGAGACCGTATCGTCGGCCTCGCTTGAGTCGCAGCTGGGTT 1626923 Query 317140 TTGTTCAGAAGAATCTTACCACCATATGCCAGAGAGAACTCACAATCACACAGGTCCTCG 317199 |||||| ||||||||| |||| || ||||||||||||||||| | |||||| |||||| Sbjct 1626922 CGGTTCAGCAGAATCTTAGCACCGTAAGCCAGAGAGAACTCACAGTTACACAGATCCTCG 1626863 Query 317200 CC 317201 || Sbjct 1626862 CC 1626861 Score = 114 bits (126), Expect = 3e-20 Identities = 165/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || | ||||| | ||| |||| | | ||||| ||||| | Sbjct 2276773 ACCACCTCGGAGTCGGAGAAAGAGATGGAGAGTGGACTCTTCT-GAATGTTTTAGTCCGG 2276715 Query 282932 AA-GCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCG 282990 || | || | |||||||| || || || || || || |||| || || ||||| | Sbjct 2276714 AAAGAGTTGGACCATCCTCGAGCTGCTTACCAGCGAAAATCAGTCGCTGCTGGTCCGGGG 2276655 Query 282991 GAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 |||| |||||||||| || ||||| ||| | ||||| ||||| |||| || | Sbjct 2276654 GAAT--CCTCCTTGTCCTGAATCTTGACTTGACAATTGTCGATGGTGTCGGAAGACTCAA 2276597 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | ||||||||||| ||||| || |||| |||||| ||||| |||||||| Sbjct 2276596 CCTCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTGCAT 2276548 Score = 111 bits (122), Expect = 3e-19 Identities = 145/192 (76%), Gaps = 9/192 (5%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 || || || ||||||||||| | ||| || |||||||| || || || || ||| Sbjct 2276512 TCCTTCTGAATGTTGTAGTCGGAAAG---GCAACCATCCTCGAGCTGCTTACCCAGAAAA 2276456 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTG-CTTTTACGGT 283027 |||| || || ||||| | ||||| ||||||||||| || ||||| | |||| || | Sbjct 2276455 ATCAGTCGCTGCTGGTC-CGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTTGACATT 2276397 Query 283028 ATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||| |||||||| |||| || || ||| ||||||| || || || |||| |||||| || Sbjct 2276396 ATCAATAGTGTCAGAAGACTC-AC-TCG-GAGTGATGGT-TTTCCAGTCAGAGTCTTGAC 2276341 Query 283088 GAATATCTGCAT 283099 ||| |||||||| Sbjct 2276340 GAAAATCTGCAT 2276329 Score = 107 bits (118), Expect = 4e-18 Identities = 167/229 (73%), Gaps = 11/229 (5%) Strand=Plus/Minus Query 282872 ACCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGC 282931 |||||| || || || || || ||||| | ||| || || || ||||||||||||| Sbjct 2277208 ACCACCTCGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAG- 2277150 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| || ||||||||||| || || || || ||||| |||| || || |||| | || Sbjct 2277149 AAGAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGT-TCGGGG 2277091 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGAT-AGTGTCCGAAGCTTCGA 283050 || || |||||||| || ||||| | || || | ||||| |||| |||| || | Sbjct 2277090 GATCCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCGATGGGTGT-CGAA--CTCAA 2277034 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 | |||||||||| | || || ||| | ||||| ||||| |||||||| Sbjct 2277033 C-TCGAGAGTGA---TGTTTCCAGTC-AGGTCTTGACGAAAATCTGCAT 2276990 Score = 104 bits (114), Expect = 5e-17 Identities = 144/194 (74%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGC-GTGCGGCCATCCTCT-AGTTGTTTCCCGGCAA 282966 || || || ||||||||||| | ||| || || |||||||| || || || || || | Sbjct 2277399 TCCTTCTGAATGTTGTAGTCGGAAAGAAGTTCGACCATCCTCGGAGCTGCTTACCAGCGA 2277340 Query 282967 AGATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGG 283026 | |||| || || ||||| ||||| ||||||||||| || ||||| | |||| Sbjct 2277339 AAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGAATCTTGGACTTTA-AT 2277281 Query 283027 TATCGATAGTGTCCGAAGCTTCGACTTCGAGAGTGATCGTC-TTACCCGTCAAAGTCTTA 283085 | ||||| ||||| |||| || || |||| || ||| ||| || || |||| |||||| Sbjct 2277280 TGTCGATGGTGTCGGAAGACTCAACCTCGA-AG-GATGGTCTTTTCCAGTCAGAGTCTTG 2277223 Query 283086 ACGAATATCTGCAT 283099 ||||| |||||||| Sbjct 2277222 ACGAAAATCTGCAT 2277209 Score = 98.7 bits (108), Expect = 2e-15 Identities = 163/226 (72%), Gaps = 12/226 (5%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || ||||| || ||||| | || || || |||||||| | | | | Sbjct 2277652 CCACCTCGGAGTCGAAGAACGAGATGGAGA-TGGACTCCTTCTGGATGTTTTCG---GAA 2277597 Query 282933 AGCGTG-CGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 || || ||||||||||| | || | || ||||| |||| || || ||||| || Sbjct 2277596 AGAGTTTCGGCCATCCTCG-GCTGCT--CCAGCAAAAATCAT-CGCTGCTGGTCGG--GG 2277543 Query 282992 AATACCCTCCTTGTC-TTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGA 283050 || || |||||||| ||| ||||| | || || | ||||| ||||| |||| || | Sbjct 2277542 GATCCCTTCCTTGTCCTTGAATCTTGGACTTGACATTGTCGATGGTGTCGGAAGACTCAA 2277483 Query 283051 CTTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTG 283096 | ||||||||||| ||||| || |||| |||||| ||||| ||||| Sbjct 2277482 CCTCGAGAGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATCTG 2277437 Score = 91.5 bits (100), Expect = 3e-13 Identities = 139/192 (72%), Gaps = 11/192 (6%) Strand=Plus/Minus Query 282909 TCTTTTTGGATGTTGTAGTCAGCAAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAG 282968 ||| |||| ||||||||||| | || || || |||||||| || || || || || || Sbjct 2276955 TCTCTTTGAATGTTGTAGTCGGAAA--GTTCGACCATCCTCGAGCTGCTTACCAGCGAAA 2276898 Query 282969 ATCAAACGTTGTTGGTCACCCGGAATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTA 283028 |||| | || ||||| ||||| || ||||||| || ||||| ||| | Sbjct 2276897 ATCA---GCTGCTGGTCCGGGGGAAT-CCTCCCTTGTCCTGAATCTTGACTT---GATTG 2276845 Query 283029 TCGATAGTGTCCGAAGCTTCGACTTCGAGAG-TGATCGTCTTACCCGTCAAAGTCTTAAC 283087 ||||| ||||| |||| || || ||||||| |||| || || || |||| |||||| || Sbjct 2276844 TCGATGGTGTCGGAAGACTCAACCTCGAGAGTTGATGGTTTTTCCAGTCAGAGTCTTGAC 2276785 Query 283088 GAATATCTGCAT 283099 ||| || ||||| Sbjct 2276784 GAAAAT-TGCAT 2276774 Score = 87.8 bits (96), Expect = 4e-12 Identities = 111/152 (73%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 315708 GAGACTCTCGCGGTCCACAAAGTTGGTCGGCTCATCAAGAACGATGACGTGGGGTTGTTG 315767 |||| ||||| |||| | ||||||| ||||||||||| ||||| | |||||| | || Sbjct 1628382 GAGAGTCTCGA--TCCAGATAGTTGGTAGGCTCATCAAGGACGATAAGATGGGGTCGCTG 1628325 Query 315768 CCATAGAGCGGCGCCGATAACGAGCTTTAGTTTTTGCCCACCAGACAGTCCACGGATGCG 315827 ||| | |||| | | || ||||| | || || ||||||||||| || ||||| || Sbjct 1628324 CCAGGTACAGGCGGCAAGCACAAGCTTGACCTTCTGACCACCAGACAGACCTCGGATTCG 1628265 Query 315828 AGAATGAGTGGTAAATTCTGGGTCAAGGCCAA 315859 ||| |||| | || || || || || |||| Sbjct 1628264 AGAGTGAGAGACAAGCTCGGGCTCGAGACCAA 1628233 >seq2 Length=3044971 Score = 105 bits (116), Expect = 1e-17 Identities = 566/889 (64%), Gaps = 23/889 (3%) Strand=Plus/Minus Query 229535 CTTCCCTATTCAATACCCCGACCTCTGGGATATGTATAAGAAGGCGGTGGCAACCTTTTG 229594 |||||| || || |||| ||| ||||| | ||||| |||||||| | ||| | || || Sbjct 506969 CTTCCCCATCCAGTACCACGAAATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTG 506910 Query 229595 GACCACGGAGGAAGTCCCCCTA--AATGCAGACGTCGTCGACTGGCGCGAGAA---ACTC 229649 ||| | ||||| | || || | ||| | | |||||| ||||| |||| Sbjct 506909 GACAGCTGAGGAGATTGATCTTGGAAAG--GACATGGGTGACTGG---GAGAACAGACTC 506855 Query 229650 AACGACGATGAACGCCATTTCATCAAGCACATTCTCGGGTTTTTTGCAGGTTCCGACGGT 229709 ||| ||||||| || |||||| ||| |||||| || ||||| | ||||||||| Sbjct 506854 AACAACGATGAGCGGTTCTTCATCTCCCACGTTCTCGCATTCTTTGCTGCCTCCGACGGT 506795 Query 229710 ATCGTGATGGAAAACTTGCA-GACTAACTTCAGCGTCGAAGTAACGGTCCCAGAGGCACG 229768 ||||| | || ||| || || | ||| || ||| || || ||| ||||| Sbjct 506794 ATCGTTAACGAGAACCTGGTTGAGCGA-TTCTCCGGCGAGGTGCAGGCCCCCGAGGCCAA 506736 Query 229769 GCAGTTTTACGCATACCAGACGTTCAATGAATCTGTTCATTCGGAACAGTATGCCCTTCT 229828 | || |||| | ||||| | | || | || || || || | || || Sbjct 506735 GTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCGCTGCT 506676 Query 229829 TATTGACGCGCTCATTTCCGACGAGCGAGAGCGTGCCGAACTGTTCGACGCCATCGAAAA 229888 || ||| | ||| ||| |||||| || | |||||| |||||||||| | Sbjct 506675 GATCGACACATACATCAAGGACCCCAAAGAGCGAACCTACCTGTTCAACGCCATCGAGAC 506616 Query 229889 CATCCCGGCGGTCCATAACAAAGCGCGTTGGGCTCAGAAGTGG--CTGGAACCCAG--TA 229944 |||||| || | || || || ||||| | |||||| || || || | Sbjct 506615 CATCCCCTGCATCAAGAAAAAGGCCGACTGGGCCCTCAAGTGGATCTCCGACGAAGAGTC 506556 Query 229945 AATCGTTTGCAGAGCGTCTCGTCGCGTGGGTGTGCGTTGAGGGTATTCTGTTCTCCGGGA 230004 | | |||| |||||| ||| | || | | ||| ||||| || | |||||||| Sbjct 506555 CACC-TTTGGAGAGCGACTCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCT 506497 Query 230005 GTTTCTGCGCCATCTTTTGGCT-ACGCAACAAGGGCGTCATGCCCGGGCTCGGTCTGTCG 230063 |||| | ||||||| ||||| | | | | ||| | ||||||| || ||| | || Sbjct 506496 CTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTC-TCATGCCTGGCCTCACCTTCTCC 506438 Query 230064 AACGAATTCATCAGCAGGGACGAAGGTCTTCACCAGCAATTTGGCGAGGTCTTGTATTCG 230123 ||||| ||||| | | ||||| ||||| ||| | |||| | | | | ||| Sbjct 506437 AACGAGCTCATCTCCCGAGACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTTTTCTCG 506378 Query 230124 AAGCTAAATAACAAACTACCTTTC-GAA-ACGGTGAAACAAATCGTCACAGAAGTAGTTG 230181 | || | ||| || ||| ||| | || | | || | || | |||| Sbjct 506377 CACCTTGAGAACCGAC--CCTCAAAGAAGATTGTTGAGGACGTCATTGTCGAGGCTGTTG 506320 Query 230182 CAAATGAAAAGGAGTTCATTTGCGACGCTATTCCTTGCCGTCTTATCGGCATGAATGCTG 230241 | || |||||||| || |||||| | || || |||| | || ||||| || Sbjct 506319 GCATCGAGCAGGAGTTCCTTACTGACGCTCTGCCCTGTGGTCTGCTTGGTATGAACGCCA 506260 Query 230242 ATCTCATGGGGCAATATATCGAATTCGTAGCTGATCGTATTTTCGTGGCGCTAGGGTACG 230301 | || ||| | || || ||||| || || ||||| ||| | | || || || || || Sbjct 506259 AGCTGATGTGCCAGTACATCGAGTTTGTCGCTGACCGTCTGCTAGTTGCTCTCGGTAACT 506200 Query 230302 AGAAAGTGTATAACTCCAAGAACCCCTTCGCTTTTATGGAGCTCATTTCACTCCAGGGGA 230361 || ||||||||||||| |||||||||| || |||||| ||| || || || | Sbjct 506199 CCAAGGTGTATAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGCCGGCA 506140 Query 230362 AAACTAACTTCTTCGAAAAGCGTGTCAGCGATTATCAAAGGCCCGGTGT 230410 | || ||||| ||||| ||||| || ||| || || | | ||||||| Sbjct 506139 AGACCAACTTTTTCGAGAAGCGAGTGTCCGACTACCAGAAGGCCGGTGT 506091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1046739106120578