Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12]
7 sequences; 20,547,992 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq6 188 2e-42
seq5 134 3e-26
>seq6
Length=4002965
Score = 188 bits (208), Expect = 2e-42
Identities = 173/219 (79%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
||||| || || || || || || || || || ||||||||||||||||| ||| |||
Sbjct 1219023 CAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAGTCCTCTGAC 1219082
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||| || |||||||| ||||| |||||||| || |||||||| |||||||||||
Sbjct 1219083 ACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAGCAG 1219142
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||||||||||||||| || |||||||| || || | |||||| |||| || ||| ||
Sbjct 1219143 CGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACTCTTTCCGACTACAACATC 1219202
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| || || || || || ||||| ||| || ||||| ||
Sbjct 1219203 CAGAAGGAGTCCACTCTCCATCTCGTTCTGCGACTCCGA 1219241
Score = 167 bits (184), Expect = 6e-36
Identities = 166/215 (77%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| ||||| || || || || || || || || ||||||||||||||||| || |||
Sbjct 1337357 CAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTCGAGGTGGAGTCTTCCGAC 1337416
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| |||||||| ||||| |||||||| || ||||| || |||||||||||
Sbjct 1337417 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAGCAG 1337476
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||||||||||||||| || |||||||| || || | || ||| | || || ||| ||
Sbjct 1337477 CGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACAACATC 1337536
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138
|| || || || || || ||||| || || ||||
Sbjct 1337537 CAGAAGGAGTCCACTCTCCATCTCGTCCTGCGACT 1337571
>seq5
Length=4198534
Score = 134 bits (148), Expect = 3e-26
Identities = 167/221 (76%), Gaps = 6/221 (3%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || ||||| || ||||| || ||||| |||||||| || || |||
Sbjct 2276551 CAGATTTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTTGAGTCTTCCGAC 2276610
Query 177984 ACCATCGAGAA-CGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042
|||||||| || ||| || |||||||||||| ||| |||| |||| |||||||||||
Sbjct 2276611 ACCATCGACAATTGTC-AAGTCAAGATTCAGGAC-AAGGAGGATTCCC-CCGGACCAGCA 2276667
Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC-GATTATAACG 178101
||||| || ||||| || || |||||||| ||||| |||||| || || || |||
Sbjct 2276668 GCGACTGATTTTCGCTGGTAAGCAGCTCGAGGATGGTCCAACTCTTTCCGGACTAAAACA 2276727
Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
| | | |||| || || || ||||| || | ||||| ||
Sbjct 2276728 TTC-AGAAGAGTCCACTCTCCATCTCTTTCTCCGACTCCGA 2276767
Score = 123 bits (136), Expect = 6e-23
Identities = 164/220 (75%), Gaps = 11/220 (5%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || || || || ||||| | |||| |||||| || || || |||
Sbjct 2276993 CAGATTTTCGTCAAGAC-CTGACTGGAAACA---TCACTCTCGAGTTG---AGTTC-GAC 2277044
Query 177984 ACC-ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042
||| ||||| || ||||| |||||||||||||| ||||| ||||| ||| |||||||
Sbjct 2277045 ACCCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGGATCCC-CCGAACCAGCA 2277103
Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102
||||| || || || || || |||||||| ||||| | |||||| | || || ||| |
Sbjct 2277104 GCGACTGATTTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTT-CTGACTACAACAT 2277162
Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|| || || || || || ||||| ||| | ||||| ||
Sbjct 2277163 TCAGAAGGAGTCCACTCTCCATCTCGTTCTCCGACTCCGA 2277202
Score = 120 bits (132), Expect = 7e-22
Identities = 157/210 (75%), Gaps = 7/210 (3%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCT-CGAGGTGGAAAGCTCAGA 177982
|| |||||||| || ||||| || |||||| || || ||| |||||| || || ||
Sbjct 2277212 CAGATTTTCGTCAAGACTCTGACTGGAAAA--GACCATCCTTCGAGGTTGAGTCTTCCGA 2277269
Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042
||||||||| || | || |||||||||||||| || ||||| || |||||||||||
Sbjct 2277270 CACCATCGACAAT-TAAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAGCA 2277328
Query 178043 ACGACTTATCTTCGCCGGAAAACAGCT-CGAAGATGGAAGGAC-TCTTGCCGATTATAAC 178100
||||| || ||||| || || ||||| ||| ||||| | || |||| |||| || |||
Sbjct 2277329 GCGACTGATTTTCGCTGGTAAGCAGCTCCGAGGATGGTCGAACTTCTTTCCGACTACAAC 2277388
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTT 178130
| || || || || || | ||||| |||
Sbjct 2277389 ATTCAGAAGGAGTCCACTC-CCATCTCGTT 2277417
Score = 116 bits (128), Expect = 9e-21
Identities = 142/187 (76%), Gaps = 10/187 (5%)
Strand=Plus/Plus
Query 177926 AATTTTCGTGAAAACTCTCACAGGAAAAACGATCACC-CTCGAGGTGGAAAGCTCAGACA 177984
||||||||| || ||||| || |||||||| |||| | |||||||| || || ||||
Sbjct 2276778 AATTTTCGTCAAGACTCTGACTGGAAAAACCATCAACTCTCGAGGTTGAGTCTTCCGACA 2276837
Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044
||||||| || |||| || |||||||||||| | |||| |||| |||||||||||
Sbjct 2276838 CCATCGACAA--TCAAGTCAA-GATTCAGGACAAGGGAGGATTCCC-CCGGACCAGCA-- 2276891
Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104
|| || ||||| || || |||||||| ||||| | | ||| |||| || ||| | |
Sbjct 2276892 -GCTGATTTTCGCTGGTAAGCAGCTCGAGGATGGTCGAA--CTTTCCGACTACAACATTC 2276948
Query 178105 AAAAAGA 178111
||| |||
Sbjct 2276949 AAAGAGA 2276955
Score = 109 bits (120), Expect = 1e-18
Identities = 163/222 (73%), Gaps = 12/222 (5%)
Strand=Plus/Plus
Query 177923 CCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGA 177982
||| |||||||| || ||||| || ||||| || ||||| |||||||| || || ||
Sbjct 2277436 CCAGATTTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTTGAGTCTTCCGA 2277495
Query 177983 CACCATCGAGAACGTCAAACAAAAGATTC-AGGACAAAGAAGGAATCCCTCCGGACCAGC 178041
||||||||| || ||||| ||||||| ||||||| ||||| |||| || |||||||
Sbjct 2277496 CACCATCGACAATGTCAAGTCCAAGATTCAAGGACAAGGAAGGGATCC--CCCGACCAGC 2277553
Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG-GACTCTTGCCGATTATAAC 178100
| ||| | || || || || | |||| ||| ||||| | |||||| ||| | |||
Sbjct 2277554 AGCGA-TGATTTTTGCTGG--AGCAGC-CGAGGATGGCCGAAACTCTTTCCG---AAAAC 2277606
Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142
|||| || || || | || ||||| ||| | ||||| ||
Sbjct 2277607 ATCCAGAAGGAGTCCA-TCTCCATCTCGTTCTTCGACTCCGA 2277647
Score = 89.7 bits (98), Expect = 1e-12
Identities = 117/156 (75%), Gaps = 6/156 (4%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| |||||||| || ||||| || |||||| | ||||| | |||| || || |||
Sbjct 2276332 CAGATTTTCGTCAAGACTCTGACTGGAAAACC-ATCACTC-CGAGT--GAGTCTTCTGAC 2276387
Query 177984 ACCATCGAGAACGTCAAACAA-AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042
|| || || || |||||| |||||||||||||| || ||||| || |||||||||||
Sbjct 2276388 ACTATTGATAATGTCAAAGTCCAAGATTCAGGACAAGGAGGGAATTCC-CCGGACCAGCA 2276446
Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078
||||| || || || || |||||||| |||||
Sbjct 2276447 GCGACTGATTTTTCTGGGTAAGCAGCTCGAGGATGG 2276482
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203731092040358
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |