Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq6 188 2e-42 seq5 134 3e-26 >seq6 Length=4002965 Score = 188 bits (208), Expect = 2e-42 Identities = 173/219 (79%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||| || || || || || || || || || ||||||||||||||||| ||| ||| Sbjct 1219023 CAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAGTCCTCTGAC 1219082 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||||| |||||||| || |||||||| ||||||||||| Sbjct 1219083 ACCATTGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAGCAG 1219142 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||||||| || |||||||| || || | |||||| |||| || ||| || Sbjct 1219143 CGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACTCTTTCCGACTACAACATC 1219202 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || ||||| ||| || ||||| || Sbjct 1219203 CAGAAGGAGTCCACTCTCCATCTCGTTCTGCGACTCCGA 1219241 Score = 167 bits (184), Expect = 6e-36 Identities = 166/215 (77%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||| || || || || || || || || ||||||||||||||||| || ||| Sbjct 1337357 CAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTCGAGGTGGAGTCTTCCGAC 1337416 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| |||||||| ||||| |||||||| || ||||| || ||||||||||| Sbjct 1337417 ACCATCGACAACGTCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGACCAGCAG 1337476 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||||||||| || |||||||| || || | || ||| | || || ||| || Sbjct 1337477 CGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTACAACATC 1337536 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACT 178138 || || || || || || ||||| || || |||| Sbjct 1337537 CAGAAGGAGTCCACTCTCCATCTCGTCCTGCGACT 1337571 >seq5 Length=4198534 Score = 134 bits (148), Expect = 3e-26 Identities = 167/221 (76%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||||| || ||||| || ||||| |||||||| || || ||| Sbjct 2276551 CAGATTTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTTGAGTCTTCCGAC 2276610 Query 177984 ACCATCGAGAA-CGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 |||||||| || ||| || |||||||||||| ||| |||| |||| ||||||||||| Sbjct 2276611 ACCATCGACAATTGTC-AAGTCAAGATTCAGGAC-AAGGAGGATTCCC-CCGGACCAGCA 2276667 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC-GATTATAACG 178101 ||||| || ||||| || || |||||||| ||||| |||||| || || || ||| Sbjct 2276668 GCGACTGATTTTCGCTGGTAAGCAGCTCGAGGATGGTCCAACTCTTTCCGGACTAAAACA 2276727 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 | | | |||| || || || ||||| || | ||||| || Sbjct 2276728 TTC-AGAAGAGTCCACTCTCCATCTCTTTCTCCGACTCCGA 2276767 Score = 123 bits (136), Expect = 6e-23 Identities = 164/220 (75%), Gaps = 11/220 (5%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || || || || ||||| | |||| |||||| || || || ||| Sbjct 2276993 CAGATTTTCGTCAAGAC-CTGACTGGAAACA---TCACTCTCGAGTTG---AGTTC-GAC 2277044 Query 177984 ACC-ATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 ||| ||||| || ||||| |||||||||||||| ||||| ||||| ||| ||||||| Sbjct 2277045 ACCCATCGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGGATCCC-CCGAACCAGCA 2277103 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 ||||| || || || || || |||||||| ||||| | |||||| | || || ||| | Sbjct 2277104 GCGACTGATTTTTGCTGGTAAGCAGCTCGAGGATGGCCGAACTCTT-CTGACTACAACAT 2277162 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 || || || || || || ||||| ||| | ||||| || Sbjct 2277163 TCAGAAGGAGTCCACTCTCCATCTCGTTCTCCGACTCCGA 2277202 Score = 120 bits (132), Expect = 7e-22 Identities = 157/210 (75%), Gaps = 7/210 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCT-CGAGGTGGAAAGCTCAGA 177982 || |||||||| || ||||| || |||||| || || ||| |||||| || || || Sbjct 2277212 CAGATTTTCGTCAAGACTCTGACTGGAAAA--GACCATCCTTCGAGGTTGAGTCTTCCGA 2277269 Query 177983 CACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 ||||||||| || | || |||||||||||||| || ||||| || ||||||||||| Sbjct 2277270 CACCATCGACAAT-TAAAGTCCAAGATTCAGGACAAGGAGGGAATTCCCCCGGACCAGCA 2277328 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCT-CGAAGATGGAAGGAC-TCTTGCCGATTATAAC 178100 ||||| || ||||| || || ||||| ||| ||||| | || |||| |||| || ||| Sbjct 2277329 GCGACTGATTTTCGCTGGTAAGCAGCTCCGAGGATGGTCGAACTTCTTTCCGACTACAAC 2277388 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTT 178130 | || || || || || | ||||| ||| Sbjct 2277389 ATTCAGAAGGAGTCCACTC-CCATCTCGTT 2277417 Score = 116 bits (128), Expect = 9e-21 Identities = 142/187 (76%), Gaps = 10/187 (5%) Strand=Plus/Plus Query 177926 AATTTTCGTGAAAACTCTCACAGGAAAAACGATCACC-CTCGAGGTGGAAAGCTCAGACA 177984 ||||||||| || ||||| || |||||||| |||| | |||||||| || || |||| Sbjct 2276778 AATTTTCGTCAAGACTCTGACTGGAAAAACCATCAACTCTCGAGGTTGAGTCTTCCGACA 2276837 Query 177985 CCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAAC 178044 ||||||| || |||| || |||||||||||| | |||| |||| ||||||||||| Sbjct 2276838 CCATCGACAA--TCAAGTCAA-GATTCAGGACAAGGGAGGATTCCC-CCGGACCAGCA-- 2276891 Query 178045 GACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCC 178104 || || ||||| || || |||||||| ||||| | | ||| |||| || ||| | | Sbjct 2276892 -GCTGATTTTCGCTGGTAAGCAGCTCGAGGATGGTCGAA--CTTTCCGACTACAACATTC 2276948 Query 178105 AAAAAGA 178111 ||| ||| Sbjct 2276949 AAAGAGA 2276955 Score = 109 bits (120), Expect = 1e-18 Identities = 163/222 (73%), Gaps = 12/222 (5%) Strand=Plus/Plus Query 177923 CCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGA 177982 ||| |||||||| || ||||| || ||||| || ||||| |||||||| || || || Sbjct 2277436 CCAGATTTTCGTCAAGACTCTGACTGGAAAGACCATCACTCTCGAGGTTGAGTCTTCCGA 2277495 Query 177983 CACCATCGAGAACGTCAAACAAAAGATTC-AGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||| || ||||| ||||||| ||||||| ||||| |||| || ||||||| Sbjct 2277496 CACCATCGACAATGTCAAGTCCAAGATTCAAGGACAAGGAAGGGATCC--CCCGACCAGC 2277553 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAG-GACTCTTGCCGATTATAAC 178100 | ||| | || || || || | |||| ||| ||||| | |||||| ||| | ||| Sbjct 2277554 AGCGA-TGATTTTTGCTGG--AGCAGC-CGAGGATGGCCGAAACTCTTTCCG---AAAAC 2277606 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||| || || || | || ||||| ||| | ||||| || Sbjct 2277607 ATCCAGAAGGAGTCCA-TCTCCATCTCGTTCTTCGACTCCGA 2277647 Score = 89.7 bits (98), Expect = 1e-12 Identities = 117/156 (75%), Gaps = 6/156 (4%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||| || ||||| || |||||| | ||||| | |||| || || ||| Sbjct 2276332 CAGATTTTCGTCAAGACTCTGACTGGAAAACC-ATCACTC-CGAGT--GAGTCTTCTGAC 2276387 Query 177984 ACCATCGAGAACGTCAAACAA-AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCA 178042 || || || || |||||| |||||||||||||| || ||||| || ||||||||||| Sbjct 2276388 ACTATTGATAATGTCAAAGTCCAAGATTCAGGACAAGGAGGGAATTCC-CCGGACCAGCA 2276446 Query 178043 ACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGG 178078 ||||| || || || || |||||||| ||||| Sbjct 2276447 GCGACTGATTTTTCTGGGTAAGCAGCTCGAGGATGG 2276482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203731092040358