Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12]
7 sequences; 20,547,992 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq6 150 2e-31
seq5 118 1e-21
>seq6
Length=4002965
Score = 150 bits (166), Expect = 2e-31
Identities = 174/232 (75%), Gaps = 2/232 (1%)
Strand=Plus/Minus
Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691
||| || || || || || | || ||||| || ||| ||||||||| ||||| |||||
Sbjct 1337584 ACCACCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 1337525
Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751
|| ||||| || |||| ||||||||||| |||||||| || || ||||| |||||||
Sbjct 1337524 AGAAAGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGG 1337465
Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACT 41810
||||| | |||||||||| ||| || ||| ||| | | | |||||| ||||
Sbjct 1337464 GGGAATTCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCGGAAGACT 1337406
Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
||||||| | || || || ||||| || || ||||| || |||||||||||
Sbjct 1337405 CCACCTCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCAT 1337354
Score = 123 bits (136), Expect = 2e-23
Identities = 165/227 (73%), Gaps = 2/227 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || ||||| || ||| ||||||||| ||||| ||||||||
Sbjct 1219246 CCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 1219187
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || |||| ||||||||||| |||||||| || || ||||| ||||||| |||
Sbjct 1219186 AGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 1219127
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||||| ||| || ||| ||| | | | ||||| ||||||||
Sbjct 1219126 ATTCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCAATGGTGTCAGAGGACTCCAC 1219068
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCA 41861
||| | || || || || || || || ||||| || || || ||||
Sbjct 1219067 CTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1219021
>seq5
Length=4198534
Score = 118 bits (130), Expect = 1e-21
Identities = 157/210 (75%), Gaps = 10/210 (5%)
Strand=Plus/Minus
Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC-GGAGAGGGTGCGCTCGTCGTCGAG 41715
||||| || ||| ||| ||||||||||| ||||| ||| || || | | || |||||
Sbjct 2276751 AGATGGAGAGTGGACTC-TTCTGAATGTTTTAGTCCGGAAAGAGTTGGACCATCCTCGAG 2276693
Query 41716 CTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGAT 41775
|||||| || ||||| ||||| ||||| ||||||| ||||| |||||||||| |||
Sbjct 2276692 CTGCTTACCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAA--TCCTCCTTGTCC-TGAA 2276636
Query 41776 TTTTTGCTT--CAA-CGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832
| || ||| ||| | || | |||||| ||||| ||||| | || || || ||
Sbjct 2276635 TCTTGACTTGACAATTGTCG--ATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTT 2276578
Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| ||||| ||||| ||||||||||||||
Sbjct 2276577 TCCAGTCAGAGTCTTGACGAAAATCTGCAT 2276548
Score = 116 bits (128), Expect = 3e-21
Identities = 150/197 (76%), Gaps = 10/197 (5%)
Strand=Plus/Minus
Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGG-GTGCGCTCGTCGTCG-AGCTGCTTGCCGGCG 41728
||||||||||||||| |||||||| || || || | || ||| |||||||| || |||
Sbjct 2277400 CTCCTTCTGAATGTTGTAGTCGGAAAGAAGTTCGACCATCCTCGGAGCTGCTTACCAGCG 2277341
Query 41729 AATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAA 41787
|| ||||| ||||| ||||||| ||||| | |||||||||| ||| | || | ||| ||
Sbjct 2277340 AAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC-TGAATCTTGGACTTTAA 2277282
Query 41788 C-GACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT-TTTACCCGTCAGCGTC 41845
| ||| |||||| ||||| ||||| | | || || ||| || ||||| |||
Sbjct 2277281 TTGTCGATG--GTGTCGGAAGACTCAACCTCGAAGG--ATGGTCTTTTCCAGTCAGAGTC 2277226
Query 41846 TTTACGAAAATCTGCAT 41862
|| ||||||||||||||
Sbjct 2277225 TTGACGAAAATCTGCAT 2277209
Score = 102 bits (112), Expect = 8e-17
Identities = 139/186 (75%), Gaps = 11/186 (6%)
Strand=Plus/Minus
Query 41678 TGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGG 41737
|||||||| |||||||| || | || | || ||||||||||| || ||||| ||||
Sbjct 2276949 TGAATGTTGTAGTCGGAAAG--TTCGACCATCCTCGAGCTGCTTACCAGCGAAAATCA-- 2276894
Query 41738 CGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA 41797
|||| ||||||| ||||| ||| |||||||| ||| | || ||| | | || |
Sbjct 2276893 -GCTGCTGGTCCGGGGGAATCCTC-CCTTGTCC-TGAATCTTGACTTGATTGTCG--ATG 2276839
Query 41798 GTGTCGCTCGACTCCACCTCCACCGTT-ATCGTTTTACCCGTCAGCGTCTTTACGAAAAT 41856
|||||| ||||| ||||| | ||| || ||||| || ||||| ||||| ||||||||
Sbjct 2276838 GTGTCGGAAGACTCAACCTCGAGAGTTGATGGTTTTTCCAGTCAGAGTCTTGACGAAAAT 2276779
Query 41857 CTGCAT 41862
|||||
Sbjct 2276778 -TGCAT 2276774
Score = 100 bits (110), Expect = 3e-16
Identities = 168/230 (73%), Gaps = 15/230 (7%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || || || | || ||||| || ||| ||||||||||||||| ||||| ||
Sbjct 2277207 CCACCTCGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAGA- 2277149
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|| || || | || ||||||||||| || || || ||||| ||||| |||| || ||||
Sbjct 2277148 AGAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTTCGGGGGA 2277089
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812
| || ||||||||| ||| | || | ||| || | ||| |||||| ||| |
Sbjct 2277088 TCCCT-TCCTTGTCC-TGAATCTTGGACTTGACATTGTCGA-TGGGTGTCG---AACT-C 2277036
Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
| ||| | || || |||| || ||||| ||||| ||||||||||||||
Sbjct 2277035 AACTCGAGAGTGAT-GTTT--CCAGTCAG-GTCTTGACGAAAATCTGCAT 2276990
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462303959548400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |