Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F001761485.1_202016-10-12] 7 sequences; 20,547,992 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq6 150 2e-31 seq5 118 1e-21 >seq6 Length=4002965 Score = 150 bits (166), Expect = 2e-31 Identities = 174/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 41632 ACCGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC 41691 ||| || || || || || | || ||||| || ||| ||||||||| ||||| ||||| Sbjct 1337584 ACCACCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTC 1337525 Query 41692 GGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGC 41751 || ||||| || |||| ||||||||||| |||||||| || || ||||| ||||||| Sbjct 1337524 AGAAAGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGG 1337465 Query 41752 GGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACT 41810 ||||| | |||||||||| ||| || ||| ||| | | | |||||| |||| Sbjct 1337464 GGGAATTCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCGATGGTGTCGGAAGACT 1337406 Query 41811 CCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 ||||||| | || || || ||||| || || ||||| || ||||||||||| Sbjct 1337405 CCACCTCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCAT 1337354 Score = 123 bits (136), Expect = 2e-23 Identities = 165/227 (73%), Gaps = 2/227 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || ||||| || ||| ||||||||| ||||| |||||||| Sbjct 1219246 CCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 1219187 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || |||| ||||||||||| |||||||| || || ||||| ||||||| ||| Sbjct 1219186 AGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 1219127 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||||| ||| || ||| ||| | | | ||||| |||||||| Sbjct 1219126 ATTCCCTCCTTGTCCTGGATCTTGGACTT-GACGTTGTCAATGGTGTCAGAGGACTCCAC 1219068 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCA 41861 ||| | || || || || || || || ||||| || || || |||| Sbjct 1219067 CTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1219021 >seq5 Length=4198534 Score = 118 bits (130), Expect = 1e-21 Identities = 157/210 (75%), Gaps = 10/210 (5%) Strand=Plus/Minus Query 41657 AGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTC-GGAGAGGGTGCGCTCGTCGTCGAG 41715 ||||| || ||| ||| ||||||||||| ||||| ||| || || | | || ||||| Sbjct 2276751 AGATGGAGAGTGGACTC-TTCTGAATGTTTTAGTCCGGAAAGAGTTGGACCATCCTCGAG 2276693 Query 41716 CTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGAT 41775 |||||| || ||||| ||||| ||||| ||||||| ||||| |||||||||| ||| Sbjct 2276692 CTGCTTACCAGCGAAAATCAGTCGCTGCTGGTCCGGGGGAA--TCCTCCTTGTCC-TGAA 2276636 Query 41776 TTTTTGCTT--CAA-CGACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTT 41832 | || ||| ||| | || | |||||| ||||| ||||| | || || || || Sbjct 2276635 TCTTGACTTGACAATTGTCG--ATGGTGTCGGAAGACTCAACCTCGAGAGTGATGGTCTT 2276578 Query 41833 ACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| ||||| |||||||||||||| Sbjct 2276577 TCCAGTCAGAGTCTTGACGAAAATCTGCAT 2276548 Score = 116 bits (128), Expect = 3e-21 Identities = 150/197 (76%), Gaps = 10/197 (5%) Strand=Plus/Minus Query 41671 CTCCTTCTGAATGTTATAGTCGGAGAGG-GTGCGCTCGTCGTCG-AGCTGCTTGCCGGCG 41728 ||||||||||||||| |||||||| || || || | || ||| |||||||| || ||| Sbjct 2277400 CTCCTTCTGAATGTTGTAGTCGGAAAGAAGTTCGACCATCCTCGGAGCTGCTTACCAGCG 2277341 Query 41729 AATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTG-CTTCAA 41787 || ||||| ||||| ||||||| ||||| | |||||||||| ||| | || | ||| || Sbjct 2277340 AAAATCAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCC-TGAATCTTGGACTTTAA 2277282 Query 41788 C-GACGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT-TTTACCCGTCAGCGTC 41845 | ||| |||||| ||||| ||||| | | || || ||| || ||||| ||| Sbjct 2277281 TTGTCGATG--GTGTCGGAAGACTCAACCTCGAAGG--ATGGTCTTTTCCAGTCAGAGTC 2277226 Query 41846 TTTACGAAAATCTGCAT 41862 || |||||||||||||| Sbjct 2277225 TTGACGAAAATCTGCAT 2277209 Score = 102 bits (112), Expect = 8e-17 Identities = 139/186 (75%), Gaps = 11/186 (6%) Strand=Plus/Minus Query 41678 TGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGG 41737 |||||||| |||||||| || | || | || ||||||||||| || ||||| |||| Sbjct 2276949 TGAATGTTGTAGTCGGAAAG--TTCGACCATCCTCGAGCTGCTTACCAGCGAAAATCA-- 2276894 Query 41738 CGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACA 41797 |||| ||||||| ||||| ||| |||||||| ||| | || ||| | | || | Sbjct 2276893 -GCTGCTGGTCCGGGGGAATCCTC-CCTTGTCC-TGAATCTTGACTTGATTGTCG--ATG 2276839 Query 41798 GTGTCGCTCGACTCCACCTCCACCGTT-ATCGTTTTACCCGTCAGCGTCTTTACGAAAAT 41856 |||||| ||||| ||||| | ||| || ||||| || ||||| ||||| |||||||| Sbjct 2276838 GTGTCGGAAGACTCAACCTCGAGAGTTGATGGTTTTTCCAGTCAGAGTCTTGACGAAAAT 2276779 Query 41857 CTGCAT 41862 ||||| Sbjct 2276778 -TGCAT 2276774 Score = 100 bits (110), Expect = 3e-16 Identities = 168/230 (73%), Gaps = 15/230 (7%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || ||||| || ||| ||||||||||||||| ||||| || Sbjct 2277207 CCACCTCGGAGTCGGAGAACGAGATGGAGAGTGGACTCCTTCTGAATGTTGTAGTCAGA- 2277149 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || || || | || ||||||||||| || || || ||||| ||||| |||| || |||| Sbjct 2277148 AGAGTTCGGCCATCCTCGAGCTGCTTACCAGCAAAAATCAGTCGCTGCTGGTTCGGGGGA 2277089 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 | || ||||||||| ||| | || | ||| || | ||| |||||| ||| | Sbjct 2277088 TCCCT-TCCTTGTCC-TGAATCTTGGACTTGACATTGTCGA-TGGGTGTCG---AACT-C 2277036 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 | ||| | || || |||| || ||||| ||||| |||||||||||||| Sbjct 2277035 AACTCGAGAGTGAT-GTTT--CCAGTCAG-GTCTTGACGAAAATCTGCAT 2276990 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462303959548400