Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq23 150 2e-31 seq29 141 1e-28 seq13 87.8 2e-12 >seq23 Length=2267247 Score = 150 bits (166), Expect = 2e-31 Identities = 381/574 (66%), Gaps = 8/574 (1%) Strand=Plus/Minus Query 24149 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 24208 ||| ||||||||||||| || | |||||||| || ||||| || ||||| || || Sbjct 1857510 GTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGACC 1857451 Query 24209 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 24268 ||||| || ||||| || ||||| || || || || || ||||| || || || || || Sbjct 1857450 TCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACGGC 1857391 Query 24269 CGCAAAGGCAATAAGTCTTTCTCCATAACCGG-CGCT--GTCATGTATCCACTTTTGAGC 24325 ||||||||||| |||| |||||| | || | || ||| |||||||| | || Sbjct 1857390 GGCAAAGGCAATGAGTCGCTCTCCAAAGGTGGACTCTTCGTCGGAGATCCACTTGAGGGC 1857331 Query 24326 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt 24385 ||| |||||||| || || | || || || ||||| || || || || || ||| || Sbjct 1857330 CCAGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTAGGTTCG 1857271 Query 24386 ttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 24445 || || || || | ||||| || |||| || || | || || || ||||| Sbjct 1857270 CTCTTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGTCTCGGAGTGGATGTT 1857211 Query 24446 TTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTATACA 24505 || || || || || |||||||| || | ||||||| ||| || || | Sbjct 1857210 CTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGCCTGCACCTCGCCGGA 1857151 Query 24506 AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 24565 ||||| || | | || || || || || ||||| ||| ||||| || || | || Sbjct 1857150 GAATCGCTCAACCAGGTTCTCGTTAACGATACCGTCGGAGGCAGCAAAGAATGCGAGAAC 1857091 Query 24566 ATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGT---TTATTCCAATCATTGATATCTT 24621 || || || | || || | |||| ||| || | ||| ||| || || | Sbjct 1857090 GTGGGAGATGAAGAACCGCTCATC-GTTGTTGAGTCTGTTCTCCCAGTCACCCATGTCCT 1857032 Query 24622 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 24681 | | ||| | || || ||||||| || || ||||| ||||| || ||||| | || Sbjct 1857031 TTCCAAGATCAATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCC 1856972 Query 24682 AGATGTCATGATATTGAATTGGAAAAATAACAAA 24715 |||| || || || || || || || | ||||| Sbjct 1856971 AGATTTCGTGGTACTGGATGGGGAAGAGCACAAA 1856938 >seq29 Length=2752704 Score = 141 bits (156), Expect = 1e-28 Identities = 453/700 (65%), Gaps = 2/700 (0%) Strand=Plus/Plus Query 53953 AAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCA 54012 |||||| || || | || | ||| | || || || || | || ||||||| | ||| Sbjct 58001 AAACTCATCACCATAGACGTCGTCAAGACCGGGGCACTCGTTGGGGCACATCAGGGTCCA 58060 Query 54013 CTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAG 54072 || ||| | || ||||| | ||| || || || || ||||| ||||| | || || Sbjct 58061 TTCAGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGATCCACAGAGCCAGGAACAG 58120 Query 54073 ATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAAT 54132 |||| || || | || || ||||| |||||| || ||| |||| | | || Sbjct 58121 GTCTCGGGCTCGAATCTCTTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGAT 58180 Query 54133 ATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTG 54192 ||| ||||| || || | ||| || | | | ||||| || ||||| |||||||| Sbjct 58181 ATCGTCGTGCCAGGGCTCAAGGTACATTGCAAAGGCACCAGGTCGCTTGTTGCCTCCCTG 58240 Query 54193 ATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGC 54252 ||| | ||||| |||||||| ||||| || | || ||| || | ||||| ||||| | Sbjct 58241 ATCAACGTATCGGGCGGTGTTGTTATAGACACGCAGCATGGGCACGATACCGTTGGAGGT 58300 Query 54253 ACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGATAGACCTAT 54312 || || || || | || ||| ||| | || || || || || || ||||| || Sbjct 58301 TCCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCTCGGATGTTGTGGATAGACAGACCGAT 58360 Query 54313 CCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTAT 54372 || || || || || || | || || ||| | ||||| |||||||| || || Sbjct 58361 ACCGCCGGCAGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAGATGCCGTCGAT 58420 Query 54373 ACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGC 54432 || ||| ||||||| | || ||||| ||||| || | | |||||| || Sbjct 58421 GGAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGAGGCTGGGGAGTTCCGGC 58480 Query 54433 ATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCT 54491 || | | || || |||||||| || || | || | ||| | ||| ||||| |||| Sbjct 58481 GTTGTAGAGAGTGGGGGAAGCGTGAGTGAAGTACTTCTGAGACATATAG-TTGTAGGTCT 58539 Query 54492 CGATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCT 54551 | || || | | || | || || || || | ||| ||||| | ||| || | Sbjct 58540 CAATGGCCCGGGCAATGTTGTCGCCGTGGATACCGACAGAGACTCGCATGATCATCTGTT 58599 Query 54552 GAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAGGATTTTTCCAAAGTTTTAA 54611 | |||| || | | ||| | | ||||| ||| | | |||| || || | Sbjct 58600 GGGGTCGCTCGGCAACAGCACCGTTGACTCGCAGCAGGTATGCTCGCTCCAGGGTCTTGA 58659 Query 54612 AACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 54651 | ||||| |||||||| | |||||||| ||||| | ||| Sbjct 58660 AGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTAGAGAAT 58699 >seq13 Length=841849 Score = 87.8 bits (96), Expect = 2e-12 Identities = 458/713 (64%), Gaps = 30/713 (4%) Strand=Plus/Minus Query 53948 CGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAGGA-CATTCATCCGGACACATCAA 54006 || || || || ||||||||||||| | ||| || || | || | ||||| | | Sbjct 422194 CGGTCGAATTCCTCTCCCCAAACATCGGCCAGACCTGGGGCCTTTCTG-GGACAGAAAAG 422136 Query 54007 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 54066 ||||||| | || ||| || ||| |||||| || ||||| | ||| | || Sbjct 422135 AGACCACTTTTCGCCATTCTCGACTTTGCGCATAAACAGGTCAGGCACCCATAAGGCGTA 422076 Query 54067 AAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAA 54123 || || || | || || || ||||||| || || ||||| |||| ||||| Sbjct 422075 GAAGAGGTCACGGGCTCGATTTTCCTCGGCACC---ATGGTTTTTGCGCAGATTCAGGAA 422019 Query 54124 CGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTT 54183 ||| ||| || | |||||| || ||||| || | | | |||| || |||||||| Sbjct 422018 ATCCAAAATGTCTGCATGCCAGGGCTCCAAATACACTGCAAACGCTCCTGGACGTTTGTT 421959 Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 |||||| || || | ||| | ||| ||||| || | ||||| | ||| |||| || || Sbjct 421958 TCCTCCTTGGTCCACGTACCGAGCAGTGTTGTTGAACACTCTGAGCATAGGAACGATTCC 421899 Query 54244 ATTGGATGCACCATTGGTCCCGGAGAT-ATAGCTTCCACTGGCACGAATATTACTAAT-T 54301 |||| || | | ||| | || | ||| ||| |||| | ||| || || | Sbjct 421898 GGAGGATCTTCCTTGAGACCCAGTAATGAGAGC-TCCCTTGGCTCTAATGTTGTGGATAT 421840 Query 54302 GATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT-AACGTATCATA 54360 | || || || || || || |||| |||||| || || |||||| | ||| || || Sbjct 421839 GCAAG-CCGATACCTCCGGCGGTTTTGGAGATTTGGGCACA-CGTTTTGAGCGTGTCGTA 421782 Query 54361 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 54420 |||||| || || || | |||| | || |||||| || | |||| | Sbjct 421781 GATGCCGTCGATGGAGTCTGCTGCCATGGCCACCAGGAAACAGGACGAAAGTTGGCCCTG 421722 Query 54421 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG-TA 54479 ||||| ||||| || || |||||||| || || || || ||||| || | | Sbjct 421721 GGGGGTTCCTGCATTGAACAAAGTAGGAGACGCATGTGTGAA----TTTTCTGAGCGACA 421666 Query 54480 GA---TTGTACGTCTCGATAGC--TGAGTCTAT-ATC-CCATTGATGAATTCCTACTGCG 54532 || | ||| || ||| | ||| ||| ||| |||| |||| || | || Sbjct 421665 GAGCCTGGTAGGTTTCGCGCACCTTGAAAATATCATCTCCATGGATG----CCCAGGGCC 421610 Query 54533 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAGCAAGTAG 54592 || ||||| ||||| || ||||||| || || | || | | | ||| ||||| Sbjct 421609 ACTCGCATCAACATATGTTGAGGTCGCTCCACCACGTTTCCGCCAACTCTCAATAAGTAT 421550 Query 54593 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 54645 || || |||| || || || ||||| ||| ||| | | |||||| | ||| Sbjct 421549 GACTTCTCCAGGGTCTTGAATCCAAAGTAGGAGTAAGTCATGTCTCGGTAGTA 421497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593721384775920