Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq23 417 8e-112 seq14 141 1e-28 >seq23 Length=2267247 Score = 417 bits (462), Expect = 8e-112 Identities = 615/861 (71%), Gaps = 11/861 (1%) Strand=Plus/Plus Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635 ||||| ||||| ||||||| || ||||| ||| | |||||||| || |||| || Sbjct 1856908 GAGCCTCTGCTCAAGGAGAACCATCGACGGTTTGTGCTCTTCCCCATCCAGTACCACGAA 1856967 Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | |||||| | || || Sbjct 1856968 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACAGCTGAGGAGATTGATCTT 1857027 Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752 ||||||| | | ||||||||| | | ||| || | ||||| |||||| Sbjct 1857028 GGAAAGGACATGGGTGACTGGGAGAACAGACTCAACAACGATGAGCGGTTCTTCATCTCC 1857087 Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812 ||||| || || || || || ||| |||||| ||||| |||||||| ||||| ||||| Sbjct 1857088 CACGTTCTCGCATTCTTTGCTGCCTCCGACGGTATCGTTAACGAGAACCTGGTTGAGCGA 1857147 Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872 ||| | |||||||||| ||||||| ||||||||||||||| |||||| ||| Sbjct 1857148 TTCTCCGGCGAGGTGCAGGCCCCCGAGGCCAAGTGCTTCTACGGCTTCCAGATCATGATG 1857207 Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGC-GCTCTTCGGA 116931 |||||| | ||||| || | || ||| || |||||||| ||| | | | | | Sbjct 1857208 GAGAACATCCACTCCGAGACCTACTCGCTGCTGATCGACACATACATCAAGGACCCCAAA 1857267 Query 116932 G-GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCG 116990 | | ||| || | | ||| |||||||||||||| || || ||| |||| | ||||||| Sbjct 1857268 GAGCGAACCTACCT--GTTCAACGCCATCGAGACCATCCCCTGCATCAAGAAAAAGGCCG 1857325 Query 116991 AGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCT 117050 | ||||| || |||||| ||| | |||| || |||| || ||||| || | |||| Sbjct 1857326 ACTGGGCCCTCAAGTGGATCTCCGACGAAGAGTCCACCTTTGGAGAGCGACTCATTGCCT 1857385 Query 117051 TCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGA 117110 | || |||||||||||| ||||||| || ||| ||||||| |||| || |||||||||| Sbjct 1857386 TTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTGGCTCAAGA 1857445 Query 117111 AACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTC 117170 | || || |||||||| ||||| || ||| |||||||||||||||| | |||||||||| Sbjct 1857446 AGCGAGGTCTCATGCCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGAGACGAGGGTC 1857505 Query 117171 TGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGC 117230 |||| ||||||||||| |||| ||| ||| | | | | ||||| | | Sbjct 1857506 TGCACACTGACTTTGCCTGCCTGCTTTTCTCGCACCTTGAGAACCGACCCTCAAAGAAGA 1857565 Query 117231 GCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGC 117290 || ||| || | ||| || || | |||||||||| ||||| || || || | Sbjct 1857566 TTGTTGAGGACGTCATTGTCGAGGCTGTTGGCATCGAGCAGGAGTTCCTTACTGACGCTC 1857625 Query 117291 TG-CCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGT 117348 || || ||| ||||||| || | || || || | ||||| || ||||||||||| || Sbjct 1857626 TGCCCTGTG-GTCTGCTTGGTATGAA-CGCCAAGCTGATGTGCCAGTACATCGAGTTTGT 1857683 Query 117349 CGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCT 117408 ||| ||| | ||||| | | || | | ||||| || ||| | ||||||| | Sbjct 1857684 CGCTGACCGTCTGCTAGTTGCTCTCGGTAACTCCAAGGTGTATAACTCCACCAACCCCTT 1857743 Query 117409 GGACTTTATGAACCTCATCTC 117429 ||||| ||| | |||||| Sbjct 1857744 CGACTTCATGGAGAACATCTC 1857764 >seq14 Length=2997610 Score = 141 bits (156), Expect = 1e-28 Identities = 162/215 (75%), Gaps = 2/215 (1%) Strand=Plus/Minus Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750 ||||||| || || || || || || ||||| || |||||| |||| || || || | | Sbjct 1945401 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAGTCCTCTG 1945342 Query 40751 ACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||| | | | |||| ||||| || || | ||||| ||||| |||||| |||||||| Sbjct 1945341 ACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAG 1945283 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||| |||| ||| || || ||||| || |||| || || || |||||||||| Sbjct 1945282 CAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACTCTTTCCGACTACAAC 1945223 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 |||||||||||| |||| || ||||| || |||| Sbjct 1945222 ATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCG 1945188 Score = 134 bits (148), Expect = 1e-26 Identities = 162/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Minus Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747 ||||||| || || || || || || || || || || |||||| |||| || || | Sbjct 1826841 AAATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTCGAGGTGGAGTCTT 1826782 Query 40748 CCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | |||| ||||| || || | ||||| ||||| || ||| ||||| Sbjct 1826781 CCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGAC 1826723 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| ||||| |||| ||| || || ||||| || |||| || ||||| |||||| Sbjct 1826722 CAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTAC 1826663 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||||||| |||| || ||||| || |||| Sbjct 1826662 AACATCCAGAAGGAGTCCACTCTCCATCTCGTCCTGCG 1826625 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219013233040