Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22]
29 sequences; 20,590,669 total letters
Query= NC_001973.1
Length=161046
Score E
Sequences producing significant alignments: (Bits) Value
seq23 417 8e-112
seq14 141 1e-28
>seq23
Length=2267247
Score = 417 bits (462), Expect = 8e-112
Identities = 615/861 (71%), Gaps = 11/861 (1%)
Strand=Plus/Plus
Query 116576 GAGCCGCTGCTGCGCGAGAACCCCCGCCGGTTCGTGATTTTCCCCATACAATACCCGGAC 116635
||||| ||||| ||||||| || ||||| ||| | |||||||| || |||| ||
Sbjct 1856908 GAGCCTCTGCTCAAGGAGAACCATCGACGGTTTGTGCTCTTCCCCATCCAGTACCACGAA 1856967
Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695
|| |||| |||||||| ||||||||||| || |||||||| | |||||| | || ||
Sbjct 1856968 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACAGCTGAGGAGATTGATCTT 1857027
Query 116696 TCCAAGGACACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAAG 116752
||||||| | | ||||||||| | | ||| || | ||||| ||||||
Sbjct 1857028 GGAAAGGACATGGGTGACTGGGAGAACAGACTCAACAACGATGAGCGGTTCTTCATCTCC 1857087
Query 116753 CACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGT 116812
||||| || || || || || ||| |||||| ||||| |||||||| ||||| |||||
Sbjct 1857088 CACGTTCTCGCATTCTTTGCTGCCTCCGACGGTATCGTTAACGAGAACCTGGTTGAGCGA 1857147
Query 116813 TTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATG 116872
||| | |||||||||| ||||||| ||||||||||||||| |||||| |||
Sbjct 1857148 TTCTCCGGCGAGGTGCAGGCCCCCGAGGCCAAGTGCTTCTACGGCTTCCAGATCATGATG 1857207
Query 116873 GAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTACGTGC-GCTCTTCGGA 116931
|||||| | ||||| || | || ||| || |||||||| ||| | | | | |
Sbjct 1857208 GAGAACATCCACTCCGAGACCTACTCGCTGCTGATCGACACATACATCAAGGACCCCAAA 1857267
Query 116932 G-GAGAAGCTCCGTTTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCG 116990
| | ||| || | | ||| |||||||||||||| || || ||| |||| | |||||||
Sbjct 1857268 GAGCGAACCTACCT--GTTCAACGCCATCGAGACCATCCCCTGCATCAAGAAAAAGGCCG 1857325
Query 116991 AGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCT 117050
| ||||| || |||||| ||| | |||| || |||| || ||||| || | ||||
Sbjct 1857326 ACTGGGCCCTCAAGTGGATCTCCGACGAAGAGTCCACCTTTGGAGAGCGACTCATTGCCT 1857385
Query 117051 TCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGA 117110
| || |||||||||||| ||||||| || ||| ||||||| |||| || ||||||||||
Sbjct 1857386 TTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTGGCTCAAGA 1857445
Query 117111 AACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTC 117170
| || || |||||||| ||||| || ||| |||||||||||||||| | ||||||||||
Sbjct 1857446 AGCGAGGTCTCATGCCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGAGACGAGGGTC 1857505
Query 117171 TGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCGGCGC 117230
|||| ||||||||||| |||| ||| ||| | | | | ||||| | |
Sbjct 1857506 TGCACACTGACTTTGCCTGCCTGCTTTTCTCGCACCTTGAGAACCGACCCTCAAAGAAGA 1857565
Query 117231 GCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGC 117290
|| ||| || | ||| || || | |||||||||| ||||| || || || |
Sbjct 1857566 TTGTTGAGGACGTCATTGTCGAGGCTGTTGGCATCGAGCAGGAGTTCCTTACTGACGCTC 1857625
Query 117291 TG-CCGGTGCGTCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACATCGAGTTCGT 117348
|| || ||| ||||||| || | || || || | ||||| || ||||||||||| ||
Sbjct 1857626 TGCCCTGTG-GTCTGCTTGGTATGAA-CGCCAAGCTGATGTGCCAGTACATCGAGTTTGT 1857683
Query 117349 CGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCT 117408
||| ||| | ||||| | | || | | ||||| || ||| | ||||||| |
Sbjct 1857684 CGCTGACCGTCTGCTAGTTGCTCTCGGTAACTCCAAGGTGTATAACTCCACCAACCCCTT 1857743
Query 117409 GGACTTTATGAACCTCATCTC 117429
||||| ||| | ||||||
Sbjct 1857744 CGACTTCATGGAGAACATCTC 1857764
>seq14
Length=2997610
Score = 141 bits (156), Expect = 1e-28
Identities = 162/215 (75%), Gaps = 2/215 (1%)
Strand=Plus/Minus
Query 40691 TGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCG 40750
||||||| || || || || || || ||||| || |||||| |||| || || || | |
Sbjct 1945401 TGCAAATCTTTGTCAAGACCCTTACTGGCAAGACTATCACCCTCGAGGTGGAGTCCTCTG 1945342
Query 40751 ACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809
||| | | | |||| ||||| || || | ||||| ||||| |||||| ||||||||
Sbjct 1945341 ACACCATTGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATCCCCCCGGACCAG 1945283
Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869
|| ||||| |||| ||| || || ||||| || |||| || || || ||||||||||
Sbjct 1945282 CAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACTCTTTCCGACTACAAC 1945223
Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
|||||||||||| |||| || ||||| || ||||
Sbjct 1945222 ATCCAGAAGGAGTCCACTCTCCATCTCGTTCTGCG 1945188
Score = 134 bits (148), Expect = 1e-26
Identities = 162/218 (74%), Gaps = 2/218 (1%)
Strand=Plus/Minus
Query 40688 AAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747
||||||| || || || || || || || || || || |||||| |||| || || |
Sbjct 1826841 AAATGCAGATTTTTGTCAAGACCCTTACCGGTAAGACTATCACCCTCGAGGTGGAGTCTT 1826782
Query 40748 CCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806
|||||| | | | |||| ||||| || || | ||||| ||||| || ||| |||||
Sbjct 1826781 CCGACACCATCGACAACG-TCAAGTCCAAGATCCAGGACAAGGAGGGAATTCCCCCGGAC 1826723
Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866
||||| ||||| |||| ||| || || ||||| || |||| || ||||| ||||||
Sbjct 1826722 CAGCAGCGACTTATCTTCGCCGGTAAGCAGCTCGAGGACGGCCGAACCCTTTCTGACTAC 1826663
Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904
||||||||||||||| |||| || ||||| || ||||
Sbjct 1826662 AACATCCAGAAGGAGTCCACTCTCCATCTCGTCCTGCG 1826625
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 515219013233040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |