Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq14 107 2e-18 seq23 91.5 1e-13 seq13 84.2 2e-11 >seq14 Length=2997610 Score = 107 bits (118), Expect = 2e-18 Identities = 166/236 (70%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 ||||||| || | || || || | |||| || ||||| || || |||||||| ||| Sbjct 1945174 TACCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 1945233 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||| || ||||||||||| || || ||| |||| || |||||||| || || | Sbjct 1945234 AAAGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGG 1945293 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || ||||||||||| || || || || | || | |||||| | | ||| | Sbjct 1945294 GGATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCA 1945353 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA-TGGCTTA 118744 |||||| ||| | || ||||| || || || || ||||| || |||| ||| ||| Sbjct 1945354 CCTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCACTGGGTTA 1945409 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595 |||| || ||||| || || |||||||| || | || || ||||||||||| Sbjct 1826637 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCGTCCTCGAGCTGC 1826696 Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655 || || ||| |||| || |||||||| || || || || ||||||||||| || || Sbjct 1826697 TTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTG 1826756 Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715 || || | |||| |||||| | ||| ||||||| ||| | || || ||||| Sbjct 1826757 GACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCGGTA 1826816 Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738 || || || |||||||||||||| Sbjct 1826817 AGGGTCTTGACAAAAATCTGCAT 1826839 >seq23 Length=2267247 Score = 91.5 bits (100), Expect = 1e-13 Identities = 347/534 (65%), Gaps = 23/534 (4%) Strand=Plus/Plus Query 44778 TCGAGAATATGCCCTGCGTGCGCAGAAAGGCCGAATGGGCGATGAAGTATATTGACGATG 44837 |||||| || |||||| | | ||||||||| ||||| | |||| || ||| | Sbjct 1857293 TCGAGACCATCCCCTGCATCAAGAAAAAGGCCGACTGGGCCCTCAAGTGGATCTCCGACG 1857352 Query 44838 AAAAGATAACTTTGGCCGAACGATTGGTCGCATTCGCCATTGTCGAAGGAGTGTTCTTTT 44897 || || || || | || ||| | | || || ||| ||||| || | ||||| | Sbjct 1857353 AAGAGTCCACCTTTGGAGAGCGACTCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCT 1857412 Query 44898 CGGGGAGTTTTGCGGCGATATTTTACATGAA-AACCAAGGGAGTGATGCCCGGACTGACG 44956 | || ||| || | || || | | || || | ||| | ||||| || || || Sbjct 1857413 CCGGCTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTC-TCATGCCTGGCCTCACC 1857471 Query 44957 TTTAGCAACGAATTGATTTCGAGAGACGAAGGTCTGCACACCAACTTTGCCTGCCT-CTA 45015 || |||||| | || || ||||||| ||||||||||| ||||||||||||| || Sbjct 1857472 TTCTCCAACGAGCTCATCTCCCGAGACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTT 1857531 Query 45016 CTATAATAC---GAGAGTCGA---TCAAAAGTTGGACGCGCCCACCGTCAACGACATGTT 45069 | | || |||| ||| ||||| || | | || | ||| | | Sbjct 1857532 TTCTCGCACCTTGAGAACCGACCCTCAAA-----GAAG-----ATTGTTGAGGACGTCAT 1857581 Query 45070 CTCCGAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGCCCGAATCGT-TGG 45128 ||| || || | ||||||| ||| || || |||| ||||||||| | || || Sbjct 1857582 TGTCGAGGCTGTTGGCATCGAGCAGGAGTTCCTTACTGACGCTCTGCCCTG-TGGTCTGC 1857640 Query 45129 TGGGAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCTTCTCG 45188 | || |||||||| || ||||| | ||||||| ||||||||||| || ||||| || | Sbjct 1857641 TTGGTATGAACGCCAAGCTGATGTGCCAGTACATCGAGTTTGTCGCTGACCGTCTGCTAG 1857700 Query 45189 TCCAGTTAAAGTATC-CCAAGATGTACTATACTGAGAACCCATTCGAGTTTATGAACAAT 45247 | | ||| | ||||| |||| | | ||||| ||||| || ||| | || Sbjct 1857701 T-TGCTCTCGGTAACTCCAAGGTGTATAACTCCACCAACCCCTTCGACTTCATGGAGAAC 1857759 Query 45248 ATTTCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGTCGGCGAATACAAG 45301 || || ||| ||||| || || ||||| ||||| || || ||| ||| || Sbjct 1857760 ATCTCTCTGGCCGGCAAGACCAACTTTTTCGAGAAGCGAGTGTCCGACTACCAG 1857813 >seq13 Length=841849 Score = 84.2 bits (92), Expect = 2e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 133188 ATGTCGAGATCGATTAGCGCTTTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCG 133247 ||| | || | |||||| |||| | || ||||||| ||||| ||||||| || || Sbjct 423046 ATGCCCAGTTTGATTAGATCTTTCATCAGCCACTGGTTCACCACGAGAAACTCACCAGCC 422987 Query 133248 AGAACGCGTCTGAGATATACATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGT 133307 | || || | || || | || |||||| ||||||||||| | ||||||| ||| || Sbjct 422986 TGGACCCGACGAAGGTAAATGTTGGACGTGTACGGTTCGAAACACTCGTTGTGGCCCAGA 422927 Query 133308 ATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGAGTTTC 133356 ||||||| || | || || |||||| || || | | |||||||| Sbjct 422926 ATCTGCGATGTGGAAGCTGTAGGCATGGGGGCAACAAGTAGAGAGTTTC 422878 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433830246668068