Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22]
29 sequences; 20,590,669 total letters
Query= NC_002169.1
Length=135611
Score E
Sequences producing significant alignments: (Bits) Value
seq14 107 2e-18
seq23 91.5 1e-13
seq13 84.2 2e-11
>seq14
Length=2997610
Score = 107 bits (118), Expect = 2e-18
Identities = 166/236 (70%), Gaps = 1/236 (0%)
Strand=Plus/Plus
Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569
||||||| || | || || || | |||| || ||||| || || |||||||| |||
Sbjct 1945174 TACCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGG 1945233
Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629
| ||| || ||||||||||| || || ||| |||| || |||||||| || || |
Sbjct 1945234 AAAGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGG 1945293
Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689
| || ||||||||||| || || || || | || | |||||| | | ||| |
Sbjct 1945294 GGATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCA 1945353
Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA-TGGCTTA 118744
|||||| ||| | || ||||| || || || || ||||| || |||| ||| |||
Sbjct 1945354 CCTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCACTGGGTTA 1945409
Score = 100 bits (110), Expect = 2e-16
Identities = 144/203 (71%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 118536 TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGT 118595
|||| || ||||| || || |||||||| || | || || |||||||||||
Sbjct 1826637 TGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCGTCCTCGAGCTGC 1826696
Query 118596 TTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTT 118655
|| || ||| |||| || |||||||| || || || || ||||||||||| || ||
Sbjct 1826697 TTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTG 1826756
Query 118656 TGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTC 118715
|| || | |||| |||||| | ||| ||||||| ||| | || || |||||
Sbjct 1826757 GACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGATAGTCTTACCGGTA 1826816
Query 118716 AGAGTTTTTACAAAAATCTGCAT 118738
|| || || ||||||||||||||
Sbjct 1826817 AGGGTCTTGACAAAAATCTGCAT 1826839
>seq23
Length=2267247
Score = 91.5 bits (100), Expect = 1e-13
Identities = 347/534 (65%), Gaps = 23/534 (4%)
Strand=Plus/Plus
Query 44778 TCGAGAATATGCCCTGCGTGCGCAGAAAGGCCGAATGGGCGATGAAGTATATTGACGATG 44837
|||||| || |||||| | | ||||||||| ||||| | |||| || ||| |
Sbjct 1857293 TCGAGACCATCCCCTGCATCAAGAAAAAGGCCGACTGGGCCCTCAAGTGGATCTCCGACG 1857352
Query 44838 AAAAGATAACTTTGGCCGAACGATTGGTCGCATTCGCCATTGTCGAAGGAGTGTTCTTTT 44897
|| || || || | || ||| | | || || ||| ||||| || | ||||| |
Sbjct 1857353 AAGAGTCCACCTTTGGAGAGCGACTCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCT 1857412
Query 44898 CGGGGAGTTTTGCGGCGATATTTTACATGAA-AACCAAGGGAGTGATGCCCGGACTGACG 44956
| || ||| || | || || | | || || | ||| | ||||| || || ||
Sbjct 1857413 CCGGCTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTC-TCATGCCTGGCCTCACC 1857471
Query 44957 TTTAGCAACGAATTGATTTCGAGAGACGAAGGTCTGCACACCAACTTTGCCTGCCT-CTA 45015
|| |||||| | || || ||||||| ||||||||||| ||||||||||||| ||
Sbjct 1857472 TTCTCCAACGAGCTCATCTCCCGAGACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTT 1857531
Query 45016 CTATAATAC---GAGAGTCGA---TCAAAAGTTGGACGCGCCCACCGTCAACGACATGTT 45069
| | || |||| ||| ||||| || | | || | ||| | |
Sbjct 1857532 TTCTCGCACCTTGAGAACCGACCCTCAAA-----GAAG-----ATTGTTGAGGACGTCAT 1857581
Query 45070 CTCCGAAGCCGTGGCCATCGAGATGGAATTTTTTGCTGAGGCTCTGCCCGAATCGT-TGG 45128
||| || || | ||||||| ||| || || |||| ||||||||| | || ||
Sbjct 1857582 TGTCGAGGCTGTTGGCATCGAGCAGGAGTTCCTTACTGACGCTCTGCCCTG-TGGTCTGC 1857640
Query 45129 TGGGAATGAACGCGAATATGATGAGAAAGTACATTGAGTTTGTCGCCGATCGTCTTCTCG 45188
| || |||||||| || ||||| | ||||||| ||||||||||| || ||||| || |
Sbjct 1857641 TTGGTATGAACGCCAAGCTGATGTGCCAGTACATCGAGTTTGTCGCTGACCGTCTGCTAG 1857700
Query 45189 TCCAGTTAAAGTATC-CCAAGATGTACTATACTGAGAACCCATTCGAGTTTATGAACAAT 45247
| | ||| | ||||| |||| | | ||||| ||||| || ||| | ||
Sbjct 1857701 T-TGCTCTCGGTAACTCCAAGGTGTATAACTCCACCAACCCCTTCGACTTCATGGAGAAC 1857759
Query 45248 ATTTCGTTGGAGGGCAAAACTAAtttttttGAGAAACGCGTCGGCGAATACAAG 45301
|| || ||| ||||| || || ||||| ||||| || || ||| ||| ||
Sbjct 1857760 ATCTCTCTGGCCGGCAAGACCAACTTTTTCGAGAAGCGAGTGTCCGACTACCAG 1857813
>seq13
Length=841849
Score = 84.2 bits (92), Expect = 2e-11
Identities = 120/169 (71%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 133188 ATGTCGAGATCGATTAGCGCTTTGACGAGATACTGGTTGACCACTTGAAACTCGCCGGCG 133247
||| | || | |||||| |||| | || ||||||| ||||| ||||||| || ||
Sbjct 423046 ATGCCCAGTTTGATTAGATCTTTCATCAGCCACTGGTTCACCACGAGAAACTCACCAGCC 422987
Query 133248 AGAACGCGTCTGAGATATACATTCGACGTGAACGGTTCGAAAGATTCGTTGTTGCCGAGT 133307
| || || | || || | || |||||| ||||||||||| | ||||||| ||| ||
Sbjct 422986 TGGACCCGACGAAGGTAAATGTTGGACGTGTACGGTTCGAAACACTCGTTGTGGCCCAGA 422927
Query 133308 ATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGAGTTTC 133356
||||||| || | || || |||||| || || | | ||||||||
Sbjct 422926 ATCTGCGATGTGGAAGCTGTAGGCATGGGGGCAACAAGTAGAGAGTTTC 422878
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433830246668068
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |