Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq14 123 3e-23 >seq14 Length=2997610 Score = 123 bits (136), Expect = 3e-23 Identities = 165/227 (73%), Gaps = 2/227 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 ||||||| | |||| || | ||| | ||| |||||| || || ||||| || | Sbjct 1945176 CCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 1945235 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 ||||| || |||| || ||||||||||| ||||| || |||||||||||||| | || Sbjct 1945236 AGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 1945295 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 43135 | | |||||||||| ||| || |||| ||| | | | ||||| || ||||| Sbjct 1945296 ATTCCCTCCTTGTCCTGGATCTTGGACTTGA-CGTTGTCAATGGTGTCAGAGGACTCCAC 1945354 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCA 43182 |||| ||||| || ||||| || || ||||| ||||||||||||| Sbjct 1945355 CTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1945401 Score = 116 bits (128), Expect = 4e-21 Identities = 158/218 (72%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| || | ||| | ||| |||||| || || ||||| |||| || || || || Sbjct 1826625 CGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGGCCG 1826684 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||||||||| ||||| || |||||||||||||| | || | | ||||||| Sbjct 1826685 TCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCCTTG 1826744 Query 43089 TCCATGATTTTTTGTTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 ||| ||| || |||| ||| | | | |||||| || ||||| |||| ||||| Sbjct 1826745 TCCTGGATCTTGGACTTGA-CGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTGAT 1826803 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTT 43185 || || || || || ||||| ||||| || ||||||| Sbjct 1826804 AGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1826841 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817392716120