Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22]
29 sequences; 20,590,669 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq9 145 2e-29
seq29 89.7 1e-12
>seq9
Length=1942798
Score = 145 bits (160), Expect = 2e-29
Identities = 268/392 (68%), Gaps = 26/392 (7%)
Strand=Plus/Plus
Query 254011 TGCTTTTCCACGGTCCTCCCGGAACAGGCAAGACGTCAACCATCCTGGCGCTGGCCCGAA 254070
|||| ||| |||| ||||||||||| || || ||||| ||| | || || |||||| |
Sbjct 1375615 TGCTATTCTACGGCCCTCCCGGAACTGGAAAAACGTCGACCGTGCTCGCCCTGGCCAAAG 1375674
Query 254071 CCCTGTTGGGCGAGGGGAA--CATGAGAGAGCGCGTGCTCGAGCTGAACGCTTCTGACGA 254128
|||| | || ||| ||||| || || ||||| ||||| ||||| || |||||
Sbjct 1375675 AGCTGTACG--GACCTGAACTCATGAAGGATCGAGTGCTGGAGCTCAACGCGTCGGACGA 1375732
Query 254129 ACGCGGGTTGGACGTCGTCCGCGACAAGATCAAGACTTTCTC------CAAGATG----- 254177
||| || | | | |||| || |||| ||||||| ||| | ||| ||
Sbjct 1375733 ACGAGGAATCGCCATCGTGCGAGACAGCATCAAGAATTTTGCGGCGCAGAAGGTGGTTGC 1375792
Query 254178 --TCGATTTCGTCGTTCC-------AACCCGGCTGTCCGCCTTTCAAGCTCGTGATCCTG 254228
| | | | || | |||| ||||||||| |||||| || | ||||||
Sbjct 1375793 ACCCAAAGACCACATTGCCGAAAAGTACCC--CTGTCCGCCATTCAAGATCATCATCCTG 1375850
Query 254229 GACGAGGCGGACACCATGACGGCCGACGCGCAGTCCGCCCTCCGCCGAACGATGGAGACG 254288
|| ||||| ||| ||||||| | ||||| ||| || || || ||||| |||||||||
Sbjct 1375851 GATGAGGCAGACTCCATGACTACAGACGCCCAGAGTGCTCTGCGACGAACTATGGAGACG 1375910
Query 254289 CACTCCGTTGTGACGCGTTTTTGCCTGGTGTGCAACTACGTGTCGAAGATCATCGCCCCG 254348
|||| | ||| || || ||||| | || ||||| ||| | ||||||| ||||
Sbjct 1375911 TACTCGGCCCAGACCCGGTTCTGCCTCATCTGTAACTATGTGACCCGAATCATCGACCCG 1375970
Query 254349 CTGGCTTCTCGGTGCGCCAAGTTTCGATTCAG 254380
|| || ||||| ||| ||||||| ||||| ||
Sbjct 1375971 CTAGCGTCTCGATGCTCCAAGTTCCGATTTAG 1376002
>seq29
Length=2752704
Score = 89.7 bits (98), Expect = 1e-12
Identities = 165/237 (70%), Gaps = 4/237 (2%)
Strand=Plus/Minus
Query 249864 GTCCAACATGAAGCACCGTCCATGTGGGCTGGGCGTTCAGGCACTGCACGACGTCTACAT 249923
||| |||||| ||||| || || ||||| || |||| ||| |||| || |||
Sbjct 57614 GTCTAACATGCGACACCGACCCATTGCTCTGGGTGTCCAGGGTCTGGCCGACACCTTCAT 57555
Query 249924 GGTGATGGGATTCCCCTTCGAGTCAGAGGAGGCAGCGACGCTAAATAAACAGATTTTCGA 249983
|| | || |||| || ||||| |||||||| || ||| || | ||||| |||||
Sbjct 57554 GGCTCTACGACTCCCATTTGAGTCCGAGGAGGCCAAGAAGCTCAACATCCAGATCTTCGA 57495
Query 249984 GACCATCTATCACGGGAGC-GTCGAGGCGTCCATCGAAAGGGC-CAAGATCGACGGACCA 250041
||||||||| ||| ||||| ||||| || || ||| | ||| | || ||||| |
Sbjct 57494 GACCATCTACCAC-GGAGCTGTCGAAGCCTCTTACGAGATGGCTCTTGA-GGACGGTGCC 57437
Query 250042 TACGAGAGTTTTCAGGGGTCGCCCGCGTCGTTCGGGAAGCTTCAGTTTGATCTTTGG 250098
||||||| || ||||| || || || || || | || ||||| ||||| |||
Sbjct 57436 TACGAGACCTTCCAGGGCTCCCCTGCCTCCAAGGGTGACCTCCAGTTCGATCTCTGG 57380
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073766001028672
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |