Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22]
29 sequences; 20,590,669 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq7 102 2e-16
seq29 96.9 7e-15
>seq7
Length=4019465
Score = 102 bits (112), Expect = 2e-16
Identities = 384/597 (64%), Gaps = 24/597 (4%)
Strand=Plus/Minus
Query 35150 GACGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCC---AAATGAGGTTCTCT 35206
||||| |||| || || || ||||| || | |||| |||| | | | ||| |
Sbjct 2470732 GACGACCGAACCGGCACCGGGACTCTCTCTCTGTTTGCCCCCCCTCAGCTTCGATTCGAT 2470673
Query 35207 CT-TCGAGACGACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGT 35265
|| || | |||||| | |||| | ||||| |||||| | | |||| |||| ||| |
Sbjct 2470672 CTGTCCA-ACGACATTCTTCCCCTGCTCACCACCAAGCGAGTCTTCTACCGAGGCGTTCT 2470614
Query 35266 GGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAA 35325
||| || || | |||||| | || || |||| |||| || || | |||| ||
Sbjct 2470613 GGAGGAGCTTTTGTGGTTTGTGGCTGGATGCACCGACGGCAAAAAACTGAGCGAGAAAAA 2470554
Query 35326 GATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGA 35385
|| ||||||||| ||| ||||| || ||| || |||| | ||| | | |
Sbjct 2470553 CATTCACATCTGGGACGGAAATGGATCTAAGGAGTTCCTGGAAAAGGCCGGGCTGGGCCA 2470494
Query 35386 TAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGA 35445
||| ||||||||| ||||||| || || || ||||||||||| ||||| || || ||
Sbjct 2470493 CAGACGAGAGGGAGACCTGGGACCGGTCTATGGCTTCCAATGGCGCCATTTCGGAGCCGA 2470434
Query 35446 ATATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATA--TA 35503
|| | | ||| | ||||| ||||| | || | || || | | || | |
Sbjct 2470433 GTACAAGAATTGTGACACGGATTACACTGGCCAAGGCGTGGACCAGCT--CAAACAGGTG 2470376
Query 35504 CTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCT 35563
|| | || || ||| || || | || | | || ||| || | |||||||| ||
Sbjct 2470375 ATACACACTCTCAGAACCAACCCTCACGACCGTCGAATCATTCTGTCTGCATGGAACCCC 2470316
Query 35564 ATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGC- 35622
||||| | ||||| |||||||| || |||||| | || ||||||||| |
Sbjct 2470315 GCCGATCTCCCAAAGATGGCGCTTCCTCCCTGTCACATGTTTTGCCAGTTTTATGTGTCG 2470256
Query 35623 TA-----------ATGGAGAA---TTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTC 35668
|| | ||| | ||||||| ||| ||||||||||| | || |
Sbjct 2470255 TACAAAAACTCGGAACGAGGACGTCTGTCGTGTCAGCTGTATCAGCGATCATGTGACCTG 2470196
Query 35669 GGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGCC 35725
|| | || || |||||||| ||||| || ||| |||| || || | |||| |||
Sbjct 2470195 GGTCTTGGAGTCCCCTTCAACATTGCCTCCTACGCTCTGCTCACCCGAATGATTGCC 2470139
>seq29
Length=2752704
Score = 96.9 bits (106), Expect = 7e-15
Identities = 140/195 (72%), Gaps = 17/195 (9%)
Strand=Plus/Plus
Query 94407 CTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCA 94466
||| || | |||||||| | ||||||||| || |||| ||||||| ||| || |||||
Sbjct 57977 CTCGTACTGCTCGTACAGCTGCTTAAACTCATCACCATAGACGTCGTCAAGACCGGGGCA 58036
Query 94467 CTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC------ACTCTCTCCATGAA 94520
||||| |||||||||||||| ||| | |||| ||| |||| |||||||||
Sbjct 58037 CTCGTTGGGGCACATCAGGGTCCATT------CAGCGTTCTGCTCGACTCGCTCCATGAA 58090
Query 94521 GAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAA--TCTTCATTACCG 94578
|| || | | ||| | ||| |||| || | |||| ||| || ||||| || |||
Sbjct 58091 CAGGTCGGGGATCCACAGAGCCAGGAACAGGT--CTCGGGCTCGAATCTCTTCCTTTCCG 58148
Query 94579 GCATTCTTTCTGCAG 94593
||||||| ||||
Sbjct 58149 TGGTTCTTTC-GCAG 58162
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989583632307695
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |