Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq7 102 2e-16 seq29 96.9 7e-15 >seq7 Length=4019465 Score = 102 bits (112), Expect = 2e-16 Identities = 384/597 (64%), Gaps = 24/597 (4%) Strand=Plus/Minus Query 35150 GACGATAGAACTGGAACAGGAACTCTATCCATTTTTGGACCCC---AAATGAGGTTCTCT 35206 ||||| |||| || || || ||||| || | |||| |||| | | | ||| | Sbjct 2470732 GACGACCGAACCGGCACCGGGACTCTCTCTCTGTTTGCCCCCCCTCAGCTTCGATTCGAT 2470673 Query 35207 CT-TCGAGACGACACTATTCCAGTTCTCACTACCAAGAAAATTTTCTGGAGAGGAGTTGT 35265 || || | |||||| | |||| | ||||| |||||| | | |||| |||| ||| | Sbjct 2470672 CTGTCCA-ACGACATTCTTCCCCTGCTCACCACCAAGCGAGTCTTCTACCGAGGCGTTCT 2470614 Query 35266 GGAAGAACTCTCGTGGTTCATCAGGGGCAATACAGACGCCAAAGAATTGGCCAAGAAGAA 35325 ||| || || | |||||| | || || |||| |||| || || | |||| || Sbjct 2470613 GGAGGAGCTTTTGTGGTTTGTGGCTGGATGCACCGACGGCAAAAAACTGAGCGAGAAAAA 2470554 Query 35326 GATACACATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGA 35385 || ||||||||| ||| ||||| || ||| || |||| | ||| | | | Sbjct 2470553 CATTCACATCTGGGACGGAAATGGATCTAAGGAGTTCCTGGAAAAGGCCGGGCTGGGCCA 2470494 Query 35386 TAGAGCAGAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGA 35445 ||| ||||||||| ||||||| || || || ||||||||||| ||||| || || || Sbjct 2470493 CAGACGAGAGGGAGACCTGGGACCGGTCTATGGCTTCCAATGGCGCCATTTCGGAGCCGA 2470434 Query 35446 ATATGATACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATA--TA 35503 || | | ||| | ||||| ||||| | || | || || | | || | | Sbjct 2470433 GTACAAGAATTGTGACACGGATTACACTGGCCAAGGCGTGGACCAGCT--CAAACAGGTG 2470376 Query 35504 CTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCT 35563 || | || || ||| || || | || | | || ||| || | |||||||| || Sbjct 2470375 ATACACACTCTCAGAACCAACCCTCACGACCGTCGAATCATTCTGTCTGCATGGAACCCC 2470316 Query 35564 ATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGTGGC- 35622 ||||| | ||||| |||||||| || |||||| | || ||||||||| | Sbjct 2470315 GCCGATCTCCCAAAGATGGCGCTTCCTCCCTGTCACATGTTTTGCCAGTTTTATGTGTCG 2470256 Query 35623 TA-----------ATGGAGAA---TTGTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTC 35668 || | ||| | ||||||| ||| ||||||||||| | || | Sbjct 2470255 TACAAAAACTCGGAACGAGGACGTCTGTCGTGTCAGCTGTATCAGCGATCATGTGACCTG 2470196 Query 35669 GGGTTGGGCGTGCCCTTCAATATTGCATCATACTCTCTTCTGACTCATCTGATGGCC 35725 || | || || |||||||| ||||| || ||| |||| || || | |||| ||| Sbjct 2470195 GGTCTTGGAGTCCCCTTCAACATTGCCTCCTACGCTCTGCTCACCCGAATGATTGCC 2470139 >seq29 Length=2752704 Score = 96.9 bits (106), Expect = 7e-15 Identities = 140/195 (72%), Gaps = 17/195 (9%) Strand=Plus/Plus Query 94407 CTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGGCA 94466 ||| || | |||||||| | ||||||||| || |||| ||||||| ||| || ||||| Sbjct 57977 CTCGTACTGCTCGTACAGCTGCTTAAACTCATCACCATAGACGTCGTCAAGACCGGGGCA 58036 Query 94467 CTCGTGGGGGCACATCAGGGACCAATTCTTCCCAGCCTTC------ACTCTCTCCATGAA 94520 ||||| |||||||||||||| ||| | |||| ||| |||| ||||||||| Sbjct 58037 CTCGTTGGGGCACATCAGGGTCCATT------CAGCGTTCTGCTCGACTCGCTCCATGAA 58090 Query 94521 GAGATCAGATACCCAGATAGCTGGGAAAAGATCCCTCGTCCTCAAA--TCTTCATTACCG 94578 || || | | ||| | ||| |||| || | |||| ||| || ||||| || ||| Sbjct 58091 CAGGTCGGGGATCCACAGAGCCAGGAACAGGT--CTCGGGCTCGAATCTCTTCCTTTCCG 58148 Query 94579 GCATTCTTTCTGCAG 94593 ||||||| |||| Sbjct 58149 TGGTTCTTTC-GCAG 58162 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583632307695