Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq23 150 2e-31 seq29 149 8e-31 seq13 87.8 2e-12 >seq23 Length=2267247 Score = 150 bits (166), Expect = 2e-31 Identities = 381/574 (66%), Gaps = 8/574 (1%) Strand=Plus/Minus Query 36172 GTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 36231 ||| ||||||||||||| || | |||||||| || ||||| || ||||| || || Sbjct 1857510 GTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGACC 1857451 Query 36232 ACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGC 36291 ||||| || ||||| || ||||| || || || || || ||||| || || || || || Sbjct 1857450 TCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACGGC 1857391 Query 36292 CGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CACT--GTCATGTATCCACTTTTGAGC 36348 ||||||||||| |||| ||||||| | || | || ||| |||||||| | || Sbjct 1857390 GGCAAAGGCAATGAGTCGCTCTCCAAAGGTGGACTCTTCGTCGGAGATCCACTTGAGGGC 1857331 Query 36349 CCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttttt 36408 ||| |||||||| || || | || || || ||||| || || || || || ||| || Sbjct 1857330 CCAGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTAGGTTCG 1857271 Query 36409 ttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATGTT 36468 || || || || | ||||| || |||| || || | || || || ||||| Sbjct 1857270 CTCTTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGTCTCGGAGTGGATGTT 1857211 Query 36469 TTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTACA 36528 || || || || || |||||||| || | ||||||| ||| || || | Sbjct 1857210 CTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGCCTGCACCTCGCCGGA 1857151 Query 36529 AAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 36588 ||||| || | | || || || || || ||||| ||| ||||| || || | || Sbjct 1857150 GAATCGCTCAACCAGGTTCTCGTTAACGATACCGTCGGAGGCAGCAAAGAATGCGAGAAC 1857091 Query 36589 ATGTTTTATAAAATA---TTTTTCGTT-TGGTGTTAGTTTATTCCAATCATTGATATCTT 36644 || || || | | ||||| | | || | || | ||| ||| || || | Sbjct 1857090 GTGGGAGATGAAGAACCGCTCATCGTTGTTGAGTCTG-TTCTCCCAGTCACCCATGTCCT 1857032 Query 36645 TAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCC 36704 | | ||| | || || ||||||| || || ||||| ||||| || ||||| | || Sbjct 1857031 TTCCAAGATCAATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCC 1856972 Query 36705 AGATGTCATGATATTGAATTGGAAAAATAACAAA 36738 |||| || || || || || || || | ||||| Sbjct 1856971 AGATTTCGTGGTACTGGATGGGGAAGAGCACAAA 1856938 >seq29 Length=2752704 Score = 149 bits (164), Expect = 8e-31 Identities = 454/699 (65%), Gaps = 2/699 (0%) Strand=Plus/Plus Query 65985 AACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCAC 66044 ||||| || || | || | ||| | || || || || | || ||||||| | ||| Sbjct 58002 AACTCATCACCATAGACGTCGTCAAGACCGGGGCACTCGTTGGGGCACATCAGGGTCCAT 58061 Query 66045 TCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAA 66104 || ||| | || ||||| | ||| || || || || ||||| ||||| | || | Sbjct 58062 TCAGCGTTCTGCTCGACTCGCTCCATGAACAGGTCGGGGATCCACAGAGCCAGGAACAGG 58121 Query 66105 TCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATA 66164 |||| || || | || || ||||| |||||| || ||| |||| | | ||| Sbjct 58122 TCTCGGGCTCGAATCTCTTCCTTTCCGTGGTTCTTTCGCAGCTCGCAGAACTCGAAGATA 58181 Query 66165 TCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGA 66224 || | ||||| || || | ||| || || | | ||||| || ||||| ||||||||| Sbjct 58182 TCGTCGTGCCAGGGCTCAAGGTACATTGCAAAGGCACCAGGTCGCTTGTTGCCTCCCTGA 58241 Query 66225 TCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTA 66284 || | ||||| |||||||| ||||| || | || ||| || | ||||| ||||| || Sbjct 58242 TCAACGTATCGGGCGGTGTTGTTATAGACACGCAGCATGGGCACGATACCGTTGGAGGTT 58301 Query 66285 CCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGATAGACCTATT 66344 || || || || | || ||| ||| | || || || || || || ||||| || Sbjct 58302 CCGTTAGTTCCAGCAATGTAGGAGCCAGTAGCTCGGATGTTGTGGATAGACAGACCGATA 58361 Query 66345 CCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATA 66404 || || || || || || | || || ||| | ||||| |||||||| || || Sbjct 58362 CCGCCGGCAGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAGATGCCGTCGATG 58421 Query 66405 CTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCA 66464 || ||| ||||||| | || ||||| ||||| || | | |||||| || Sbjct 58422 GAGTCGTCCTTCATGTTGACAAGGAAACACGACGACATCTGAGGCTGGGGAGTTCCGGCG 58481 Query 66465 TTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGA-AAGTAGATTGTACGTCTC 66523 || | | || || |||||||| || || | || | ||| | ||| ||||| ||||| Sbjct 58482 TTGTAGAGAGTGGGGGAAGCGTGAGTGAAGTACTTCTGAGACATATAG-TTGTAGGTCTC 58540 Query 66524 AATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTG 66583 ||| || | | || | || || || || | ||| ||||| | ||| || || Sbjct 58541 AATGGCCCGGGCAATGTTGTCGCCGTGGATACCGACAGAGACTCGCATGATCATCTGTTG 58600 Query 66584 AGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAA 66643 |||| || | | ||| | | || || ||| | | |||| || || || Sbjct 58601 GGGTCGCTCGGCAACAGCACCGTTGACTCGCAGCAGGTATGCTCGCTCCAGGGTCTTGAA 58660 Query 66644 ACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 66682 ||||| |||||||| | |||||||| ||||| | ||| Sbjct 58661 GCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGTAGAGAAT 58699 >seq13 Length=841849 Score = 87.8 bits (96), Expect = 2e-12 Identities = 458/713 (64%), Gaps = 30/713 (4%) Strand=Plus/Minus Query 65979 CGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGA-CATTCATCCGGACACATCAA 66037 || ||||| || ||||||||||||| | ||| || || | || | ||||| | | Sbjct 422194 CGGTCGAATTCCTCTCCCCAAACATCGGCCAGACCTGGGGCCTTTCTG-GGACAGAAAAG 422136 Query 66038 CGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTAT 66097 ||||||| | || ||| || ||| |||||| || ||||| | ||| | || Sbjct 422135 AGACCACTTTTCGCCATTCTCGACTTTGCGCATAAACAGGTCAGGCACCCATAAGGCGTA 422076 Query 66098 AAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA---AGATCGAGGAA 66154 || | || | || || || ||||||| || || ||||| |||| ||||| Sbjct 422075 GAAGAGGTCACGGGCTCGATTTTCCTCGGCACC---ATGGTTTTTGCGCAGATTCAGGAA 422019 Query 66155 CGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTT 66214 ||| ||| || |||||| || ||||| || | || | |||| || |||||||| Sbjct 422018 ATCCAAAATGTCTGCATGCCAGGGCTCCAAATACACTGCAAACGCTCCTGGACGTTTGTT 421959 Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 |||||| || || | ||| | ||| ||||| || | ||||| | ||| |||| || || Sbjct 421958 TCCTCCTTGGTCCACGTACCGAGCAGTGTTGTTGAACACTCTGAGCATAGGAACGATTCC 421899 Query 66275 ATTGGATGTACCATTGGTCCCGGAGAT-ATAGCTTCCACTTGCACGAATATTACTAAT-T 66332 |||| | || | | ||| | || | ||| ||| | || | ||| || || | Sbjct 421898 GGAGGATCTTCCTTGAGACCCAGTAATGAGAGC-TCCCTTGGCTCTAATGTTGTGGATAT 421840 Query 66333 GATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT-AACGTATCATA 66391 | || || || || || || |||| |||||| || || |||||| | ||| || || Sbjct 421839 GCAAG-CCGATACCTCCGGCGGTTTTGGAGATTTGGGCACA-CGTTTTGAGCGTGTCGTA 421782 Query 66392 GATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACG 66451 |||||| || || || | |||| | || |||||| || | |||| | Sbjct 421781 GATGCCGTCGATGGAGTCTGCTGCCATGGCCACCAGGAAACAGGACGAAAGTTGGCCCTG 421722 Query 66452 ACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAG-TA 66510 ||||| ||||| || || |||||||| || || || || ||||| || | | Sbjct 421721 GGGGGTTCCTGCATTGAACAAAGTAGGAGACGCATGTGTGAA----TTTTCTGAGCGACA 421666 Query 66511 GA---TTGTACGTCTCAATAGC--TGAGTCTAT-ATC-CCATTGATGAATTCCTACTGCG 66563 || | ||| || || | ||| ||| ||| |||| |||| || | || Sbjct 421665 GAGCCTGGTAGGTTTCGCGCACCTTGAAAATATCATCTCCATGGATG----CCCAGGGCC 421610 Query 66564 ACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAG 66623 || ||||| ||||| || ||||||| || || | || | | | |||| ||||| Sbjct 421609 ACTCGCATCAACATATGTTGAGGTCGCTCCACCACGTTTCCGCCAACTCTCAATAAGTAT 421550 Query 66624 GATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 66676 || || |||| || || || ||||| ||| ||| | | |||||| | ||| Sbjct 421549 GACTTCTCCAGGGTCTTGAATCCAAAGTAGGAGTAAGTCATGTCTCGGTAGTA 421497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172561412360