Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22]
29 sequences; 20,590,669 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq23 172 7e-38
seq29 140 4e-28
>seq23
Length=2267247
Score = 172 bits (190), Expect = 7e-38
Identities = 385/574 (67%), Gaps = 8/574 (1%)
Strand=Plus/Minus
Query 42079 GTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCC 42138
|||||||||||| |||| || | |||||||| || ||||| || ||||| || ||
Sbjct 1857510 GTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGACC 1857451
Query 42139 ACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGC 42198
||||| || ||||| || || || || || || || || |||||||| || || || ||
Sbjct 1857450 TCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACGGC 1857391
Query 42199 CGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CACT--GTCATGTATCCACTTTTGAGC 42255
||||||||||| |||| ||||||| | || | || ||| |||||||| | ||
Sbjct 1857390 GGCAAAGGCAATGAGTCGCTCTCCAAAGGTGGACTCTTCGTCGGAGATCCACTTGAGGGC 1857331
Query 42256 CCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttttt 42315
||| |||||||| || || | || || || || || ||||| || || || ||| ||
Sbjct 1857330 CCAGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTAGGTTCG 1857271
Query 42316 ttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAATGAATGTT 42375
|| || || || | ||||| ||||||| || || | || || || |||||
Sbjct 1857270 CTCTTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGGTCTCGGAGTGGATGTT 1857211
Query 42376 TTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTTCTGTACA 42435
|| || ||||| || |||||||| || ||||||||| |||| || || |
Sbjct 1857210 CTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGGCCTGCACCTCGCCGGA 1857151
Query 42436 AAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGGCTGCAAAAAACGCCAATAC 42495
||||| ||| | | || ||||| || || ||||| ||| ||||| || || | ||
Sbjct 1857150 GAATCGCTCAACCAGGTTCTCGTTAACGATACCGTCGGAGGCAGCAAAGAATGCGAGAAC 1857091
Query 42496 ATGTTTTATAAAATATTTTTCGTCCGGTGTTAA----TTTATTCCAATCATTGATATCTT 42551
|| || || | || | || |||| | || | ||| ||| || || |
Sbjct 1857090 GTGGGAGATGAAGAACCGCTCAT-CGTTGTTGAGTCTGTTCTCCCAGTCACCCATGTCCT 1857032
Query 42552 TAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTATACATATTCC 42611
| | ||| | || || | ||||| || || || || ||||| || ||||| | ||
Sbjct 1857031 TTCCAAGATCAATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGCC 1856972
Query 42612 AGATATCATGATATTGAATTGGGAAAATAACAAA 42645
|||| || || || || || ||||| | |||||
Sbjct 1856971 AGATTTCGTGGTACTGGATGGGGAAGAGCACAAA 1856938
>seq29
Length=2752704
Score = 140 bits (154), Expect = 4e-28
Identities = 344/519 (66%), Gaps = 2/519 (0%)
Strand=Plus/Plus
Query 71974 CCAGGACATTCATTCGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATA 72033
|| || || || || || ||||||| | ||| || | | | | ||||| | |||
Sbjct 58029 CCGGGGCACTCGTTGGGGCACATCAGGGTCCATTCAGCGTTCTGCTCGACTCGCTCCATG 58088
Query 72034 AAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCT 72093
|| || || || ||||| ||||| | || || |||| || || | ||| || |||||
Sbjct 58089 AACAGGTCGGGGATCCACAGAGCCAGGAACAGGTCTCGGGCTCGAATCTCTTCCTTTCCG 58148
Query 72094 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 72153
|||||| || ||| |||| | | ||||| ||||| || || | ||| ||
Sbjct 58149 TGGTTCTTTCGCAGCTCGCAGAACTCGAAGATATCGTCGTGCCAGGGCTCAAGGTACATT 58208
Query 72154 GCCATAACTCCCGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 72213
|| | | || || || ||||| ||||||||||| | ||||| |||||||| |||||
Sbjct 58209 GCAAAGGCACCAGGTCGCTTGTTGCCTCCCTGATCAACGTATCGGGCGGTGTTGTTATAG 58268
Query 72214 ACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCA 72273
|| | || ||| || | ||||| ||||| | || || || || | || ||| |||
Sbjct 58269 ACACGCAGCATGGGCACGATACCGTTGGAGGTTCCGTTAGTTCCAGCAATGTAGGAGCCA 58328
Query 72274 CTGGCACGAATATTGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCG 72333
| || || || ||| || || ||||| || || || || || || || | ||
Sbjct 58329 GTAGCTCGGATGTTGTGGATAGACAGACCGATACCGCCGGCAGACTTGGAAATCAGAGCA 58388
Query 72334 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 72393
|| ||| | ||||| |||||||| || || || ||| ||||||| | || |||
Sbjct 58389 CAGGTTTTGAGGGTATCGTAGATGCCGTCGATGGAGTCGTCCTTCATGTTGACAAGGAAA 58448
Query 72394 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 72453
|| ||||| || | | |||||| || || | | || || |||||||| ||
Sbjct 58449 CACGACGACATCTGAGGCTGGGGAGTTCCGGCGTTGTAGAGAGTGGGGGAAGCGTGAGTG 58508
Query 72454 AACCATTTTTCAGACA-GTAGATTGTACGTCTCAATAGC 72491
|| | || | ||||| ||| ||||| |||||||| ||
Sbjct 58509 AAGTACTTCTGAGACATATAG-TTGTAGGTCTCAATGGC 58546
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671138956712040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |