Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq23 259 7e-64 seq29 98.7 1e-15 >seq23 Length=2267247 Score = 259 bits (286), Expect = 7e-64 Identities = 593/880 (67%), Gaps = 47/880 (5%) Strand=Plus/Plus Query 124995 CTGTTTCCCATCAGGTATCATGACATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTT 125054 || || |||||| ||| || || || ||| | |||||||| ||||| ||||||| || Sbjct 1856944 CTCTTCCCCATCCAGTACCACGAAATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTC 1857003 Query 125055 TGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATTGGGAGACTCGTTTGACT 125114 ||||| | || ||| | ||||| |||||| || || ||||||| | ||| Sbjct 1857004 TGGACAGCTGAGGAGATTGATCTTGGAAAGGACATGGGTGACTGGGAGAACAG----ACT 1857059 Query 125115 GAA--AC--TGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTGCCGGCTCCGATGG 125170 || || |||||| || || || ||| || | || |||||||| | |||||| || Sbjct 1857060 CAACAACGATGAGCGGTTCTTCATCTCCCACGTTCTCGCATTCTTTGCTGCCTCCGACGG 1857119 Query 125171 AATCGTCAACGACAATCTG-TTGACACGATTCTCTCAAGAGTTGACCATTCCAGAGGTGT 125229 ||||| ||||| || ||| |||| |||||||| ||| || || |||| Sbjct 1857120 TATCGTTAACGAGAACCTGGTTGAG-CGATTCTCCGGCGAGGTGCAGGCCCCCGAGGCCA 1857178 Query 125230 CGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAAATGTACTCTACAC 125289 |||||| ||||| ||||| |||||||| |||||| | ||||| || | ||||| | Sbjct 1857179 AGTGCTTCTACGGCTTCCAGATCATGATGGAGAACATCCACTCCGAGACCTACTCGCTGC 1857238 Query 125290 TGATTGACATGTACATTCGCGATCCGCAAC-GTAAACACATGCTCTTTAACGCAATCGAC 125348 |||| |||| ||||| || || || | ||| | || || ||||| ||||| Sbjct 1857239 TGATCGACACATACATCAAGGACCCCAAAGAGCGAACCTAC-CTGTTCAACGCCATCGAG 1857297 Query 125349 ACGGTGCCGTCTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAG 125408 || | || | || |||||||| | |||| | ||||||| ||||| || Sbjct 1857298 ACCATCCCCTGCATCAAGAAAAAGGCCGACTGGGCCCTCAAGTGGATCTCCGACGAAGAG 1857357 Query 125409 TCTTCGTACGCCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGT 125468 || | | | || |||| | || || |||||||| |||||||||||||| || || Sbjct 1857358 TCCACCTTTGGAGAGCGACTCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGC 1857417 Query 125469 AGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGT 125528 ||| || ||||||| |||||||||||||| || |||||||| || || || | Sbjct 1857418 TCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATGCCTGGCCTCACCTTCTCC 1857477 Query 125529 AACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCG 125587 |||||| | || || ||||||||||| || ||| |||||||||| || || || ||| Sbjct 1857478 AACGAGCTCATCTCCCGAGACGAGGGTCTGCACACTGACTTTGCCTGCCTGCTTTTCTCG 1857537 Query 125588 CAACT--ATCTGCGTCCC-GAGTGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAAC 125644 || || | || ||| | | |||| | ||| | || |||||| Sbjct 1857538 CACCTTGAGAACCGACCCTCAAAGAAGAT----TGTTGAGGACGT------CATTGT--- 1857584 Query 125645 CGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCCCTACC----GGTCAGCATGA 125700 ||| || || | || || || ||||| || || || | || || |||| || Sbjct 1857585 CGAGGCTGTTGGCATCGAGCAGGAGTTCCTTACTGACGCTCTGCCCTGTGGTC----TGC 1857640 Query 125701 TTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGT 125760 |||| |||||| |||||| |||||| ||||||| |||||||| || || ||||| || Sbjct 1857641 TTGGTATGAACGCCAAGCTGATGTGCCAGTACATCGAGTTTGTCGCTGACCGTCTGCT-- 1857698 Query 125761 ACGAGTTGAT-----TGGCCGCAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGAC 125815 ||||| | | | |||| | || ||| ||| || ||||| || |||||| Sbjct 1857699 ---AGTTGCTCTCGGTAACTCCAAGGTGTATAACTCCACCAACCCCTTCGACTTCATGGA 1857755 Query 125816 CAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAG 125855 | ||| || || | || ||||||||||||||||||||| Sbjct 1857756 GAACATCTCTCTGGCCGGCAAGACCAACTTTTTCGAGAAG 1857795 >seq29 Length=2752704 Score = 98.7 bits (108), Expect = 1e-15 Identities = 340/521 (65%), Gaps = 12/521 (2%) Strand=Plus/Minus Query 96864 CGATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCT 96923 ||||||||| ||||| ||||| || || || || || | || | ||| | || || Sbjct 58252 CGATACGTTGATCAGGGAGGCAACAAGCGACCTGGTGCCTTTGCAATGTACCTTGAGCCC 58193 Query 96924 TGGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCA 96983 ||||||| || | || || || |||| |||| || ||| || |||||| Sbjct 58192 TGGCACGACGATATCTTCGAGTTCTGCGAGCTGCGAAAGAACCACGGAAAGGAAGAGATT 58133 Query 96984 CGAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAAC 97043 |||||| | ||| |||| || || ||| | || || |||||||| |||| ||| | Sbjct 58132 CGAGCCCGAGACCTGTTCCTGGCTCTGTGGATCCCCGACCTGTTCATGGAGCGAGTCGAG 58073 Query 97044 GACGGTGGCT-ACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTG 97102 | | ||| | |||| ||| ||||||||| || || |||||||| ||| || Sbjct 58072 CA-GAACGCTGAATGGACCCTGATGTGCCCCAACGAGTGCCCCGGTCTTGACGACGTCTA 58014 Query 97103 GGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACG 97162 || || |||||| || |||| | |||||| | ||||||||| | |||| Sbjct 58013 TGGTGATGAGTTTAAGCAGCTGTACGAGCAGTACGAGAAGGAGGGCCGAGGCC---GACG 57957 Query 97163 AG---TCGATGCACGAGAA-CTGTGGAAGGCCATCGT-GACGGCTCAGGTAGAGACTGGA 97217 | || ||| | |||| |||||| | ||| | ||| || ||| ||| | || Sbjct 57956 AACCATCCCTGCCC-AGAAGCTGTGGTACCACATTCTCGACTGC-CAGACCGAGTCCGGC 57899 Query 97218 ACTCCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGC 97277 | || | ||| || |||||||| || || || || |||||| || | || Sbjct 57898 AACCCCTTCATGCTGTACAAGGACTCCTGCAACCGAAAGTCCAACCAGAAGAACCTCGGA 57839 Query 97278 ACCATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACG 97337 || || ||| || || |||||| || |||||||||||| | ||||| || ||| Sbjct 57838 ACAATTAAGTCTTCTAACCTGTGCTGTGAGATTGTAGAGTACTCTTCTCCTGATGAGGTC 57779 Query 97338 GCAGTTTGCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGT 97378 || || ||| ||||| || || |||||||| ||||| Sbjct 57778 GCTGTCTGCAACCTGGCTTCCATCGCTCTGCCCACTTTTGT 57738 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741058931366040