Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq23 143 3e-29 seq14 122 8e-23 >seq23 Length=2267247 Score = 143 bits (158), Expect = 3e-29 Identities = 342/503 (68%), Gaps = 28/503 (6%) Strand=Plus/Plus Query 46098 CAAGAAAA---CCGACTGGGCGATGAAGTGGATCAACAGCAGCACCG-CGACTTTCGCCG 46153 |||||||| |||||||||| | ||||||||| | | | | | | || || | | Sbjct 1857312 CAAGAAAAAGGCCGACTGGGCCCTCAAGTGGATCTCCGAC-GAAGAGTCCACCTTTGGAG 1857370 Query 46154 AGCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCA 46213 |||| | | |||||||| || |||||| |||| || || ||| ||| ||| ||| Sbjct 1857371 AGCGACTCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCTCCGGCTCTTTCGCCTCCA 1857430 Query 46214 TCTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATA 46272 |||| | |||| || | ||| | ||||||| ||||| || || ||||||||| || Sbjct 1857431 TCTTCTGGCTCAAGAAGCGAGGTC-TCATGCCTGGCCTCACCTTCTCCAACGAGCTCATC 1857489 Query 46273 TCGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCTCTACTATAACACTCGCGTGCAC 46332 || || |||||||| ||||| || |||||||| || || || | ||||| | Sbjct 1857490 TCCCGAGACGAGGGTCTGCACACTGACTTTGCCTGCCTG--CTTTT---CTCGCAC-CTT 1857543 Query 46333 GACAAGCTTGCGCCCGACACCG-----TGCTGAGCATGTTCAAG--GAGGCGGTGGCCAT 46385 || || | | || || | || |||| | || | ||||| || | ||| Sbjct 1857544 GAGAACC----GACCCTCAAAGAAGATTGTTGAGGACGTCATTGTCGAGGCTGTTGGCAT 1857599 Query 46386 TGAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTC 46445 ||| ||||||| |||| | ||| |||||| || ||||| || |||||||| || Sbjct 1857600 CGAGCAGGAGTTCCTTACTGACGCTCTGCCCTGTGGTCTGCTTGGTATGAACGCCAAGCT 1857659 Query 46446 AATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCT-TCACCAGC-CG 46503 |||||| | |||||||||||||| || ||||| ||||| || ||| || | | | Sbjct 1857660 GATGTGCCAGTACATCGAGTTTGTCGCTGACCGTCTGCTAGT--TGCTCTCGGTAACTCC 1857717 Query 46504 AAGCATTTTCACGCGCGCAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAA 46563 ||| | | || | ||| || || || || ||| | |||||||| |||| ||||| Sbjct 1857718 AAGGTGTATAACTCCACCAACCCCTTCGACTTCATGGAGAACATCTCTCTGGCCGGCAAG 1857777 Query 46564 ACTAATTTTTTCGAAAAGCGCGT 46586 || || |||||||| ||||| || Sbjct 1857778 ACCAACTTTTTCGAGAAGCGAGT 1857800 >seq14 Length=2997610 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| || | ||| | || |||||||| || |||||||| || Sbjct 1826613 CCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1826672 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| |||||||| || ||| |||| | |||||||||||||| || Sbjct 1826673 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 1826732 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||||| | || | || |||| ||||| | Sbjct 1826733 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1826792 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | || |||||||| || || || || ||||||||||| Sbjct 1826793 TCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCAT 1826839 Score = 102 bits (112), Expect = 8e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 131020 CGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAG 131079 ||||| || | ||| | || |||||||| || |||||||| ||| | || || | Sbjct 1945188 CGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGTTCGGCCG 1945247 Query 131080 TCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTG 131139 ||||| |||||||| || ||| |||| | |||||||||||||| |||||||| || ||| Sbjct 1945248 TCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATTCCCTCCTTG 1945307 Query 131140 TCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATGTCGACGGTAACG 131199 || ||| || ||||| | || | || || | |||||| | |||| ||| | Sbjct 1945308 TCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAGGGTGATA 1945367 Query 131200 GTTTTACCGGTTAGAGTTTTTACGAAAATCTGCA 131233 || || || || || || || || || || |||| Sbjct 1945368 GTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1945401 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012628895360