Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq23 174 3e-38 seq9 165 2e-35 seq29 132 1e-25 seq19 87.8 4e-12 >seq23 Length=2267247 Score = 174 bits (192), Expect = 3e-38 Identities = 565/861 (66%), Gaps = 26/861 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 ||||| || || | |||||| |||||||||| ||||||||||||||||||||| ||| Sbjct 1857791 TCGAAAAAGTTGGTCTTGCCGGCCAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTG 1857732 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | || ||| ||||| | || || || || | | ||||| || |||||||| | Sbjct 1857731 GAGTTATACACCTTGGAGTTACCGAGAGCAACTAGCAGACGGTCAGCGACAAACTCGATG 1857672 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| | |||||| | | |||||| |||| || || ||| || | || ||| | | Sbjct 1857671 TACTGGCACATCAGCTTGGCGTTCATACCAAGCAGACCACAGGGCAGAGCGTCAGTAAGG 1857612 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAAT--TGCCTTCACCTGT-GCCAGAGAC 251799 || |||| ||| || |||| | |||| ||||| | | ||| | | | || Sbjct 1857611 AACTCCTGCTCGATGCCAACAG---CCTCGACAATGACGTCCTCAACAATCTTCTTTGAG 1857555 Query 251800 AGCTTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCG 251859 | |||||| || | ||| | || || | |||| | ||||||||||||||| Sbjct 1857554 GGTCGGTTCTCAAGGTGCGAGAAAAGCAGGCAGGCAAAGTCAGTGTGCAGACCCTCGTCT 1857495 Query 251860 CGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAG 251919 || ||||| ||||||||| | ||||||||||| | || || ||| |||||||| Sbjct 1857494 CGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGACCTCGCTTCTTGAGCCAG 1857435 Query 251920 AAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGG 251979 ||||| | | || || || ||||| | | |||||||| | | |||| || Sbjct 1857434 AAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACGGCGGCAAAGGCAATGAGT 1857375 Query 251980 CGCTCAGCAAA---CGACTTGTCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTTT 252036 ||||| |||| |||| || | || | |||| | ||||| | ||||| ||| Sbjct 1857374 CGCTCTCCAAAGGTGGACTCTTCGTCGGAGATCCACTTGAGGGCCCAGTCGGCCTT-TTT 1857316 Query 252037 CCAACCGC-GGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTC 252095 | || |||||| || ||||| || | || || || | ||||| ||||| Sbjct 1857315 CTTGATGCAGGGGATGGTCTCGATGGCGTTGAACAGGTAGGTTCGCTCTTTGGGGTCCTT 1857256 Query 252096 GATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTG 252155 |||| | || | ||| || ||||| |||| || |||||| || | | ||||| Sbjct 1857255 GATGTATGTGTCGATCAGCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTG 1857196 Query 252156 GTAAGCATAGAA----TAGACGCGCGGAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTG 252211 | | | ||||| | | | | ||| ||| | | || || ||| || | Sbjct 1857195 GAAGCCGTAGAAGCACTTGGC-CTCGG--GGGCCTG-CACCTCGCCGGAGAATCGCTCAA 1857140 Query 252212 CAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGA 252271 | | |||||| | || || || ||| | | |||||||| | |||| | ||||| Sbjct 1857139 CCAGGTTCTCGTTAACGATACCGTCGGAGGCAGCAAAGAATGCGAGAACGTGGGAGATGA 1857080 Query 252272 AGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATGTCCTGATTC--AGAGG 252329 || |||||||||| |||||| ||| |||||| | ||||||| ||| ||| Sbjct 1857079 AGAACCGCTCATCGTTGTTGAGTCTGTTCTCCCAGTCACCCATGTCCT--TTCCAAGATC 1857022 Query 252330 AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACAT-TGCGAACACATCAG 252388 || || || | |||||||| | || | | |||||||||||||| ||| | | || Sbjct 1857021 AATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCTTCTTGTACATCTGC-CAGATTTCGT 1856963 Query 252389 GGTACTTGATTGGGAA-AGCA 252408 |||||| ||| ||||| |||| Sbjct 1856962 GGTACTGGATGGGGAAGAGCA 1856942 >seq9 Length=1942798 Score = 165 bits (182), Expect = 2e-35 Identities = 418/624 (67%), Gaps = 29/624 (5%) Strand=Plus/Plus Query 279345 GGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAAC 279404 || |||||||||||| ||||||| ||||| || || || |||| ||||||||||| ||| Sbjct 1640304 GGCGAGGATCTGTGTAACTGTGAGTTCTCTCTGGCTTACGGTGCTAAGATTCTGCTGAAC 1640363 Query 279405 TCTACCCGCCT-CAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGC 279463 |||| || | || ||||||| ||| || || |||||| ||||| || || || Sbjct 1640364 CGAACCCAGCTGCGAC-TCAAGCGAGGCCGACGATACGGTCTCTGTGGTCCTAACGGTGC 1640422 Query 279464 GGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGC 279523 |||||| ||| || ||||| |||||||| ||||||||| | || || ||||| || | Sbjct 1640423 TGGTAAGTCCACCCTGATGCGAGCCATTGCCAACGGTCAGGTCGAGGG-TTTCCCCACCC 1640481 Query 279524 ATCTGAGGTAAGGA-CAGTGTATGTAGAGCACGACATCGACTCCTCTCTCTCGGATAGCA 279582 | | || || | || | || || |||||||| ||| | | | | || | || Sbjct 1640482 AGGAGGAGTGTCGAACTGTCTTCGTCGACCACGACATTGACGGTACCCACGCCGACACCA 1640541 Query 279583 CTGTGTTCGACTTCCTAACGTCTGACAATCAG--GTTATGGAAATCAGCTCTCCTGAGGA 279640 || |||||| ||||| || | | | | | | ||| | || ||||| Sbjct 1640542 ACGTTGTCGACT-----ACGTCCGAAAGACCGCCGGTGAGTCCATCGGTACTGAGGAGGA 1640596 Query 279641 AATCATCCAGAAACTGGAGGCCAATGGTTT---TGATGAAAGAATGCGTAATCTGCCAGT 279697 || || | ||| | | || ||| || | | || | |||| | Sbjct 1640597 GGTCCGAAAGCAGCTGCTTGACTTCCTGTTCACTGACGAGATGACCCGAA---TGCCCAT 1640653 Query 279698 AGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCT---CACTCGCGCCATTCTACT 279754 |||||||| ||||| ||||||||||||||||| || |||| || | | | | Sbjct 1640654 CACCTCTCTGTCTGGTGGATGGAAGATGAAGCTGGCTCTTGCCACTGCCGTCCTCCGAAA 1640713 Query 279755 GCGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGC 279814 | |||||| |||| |||||||||||||| |||||||| |||| ||| |||||| || Sbjct 1640714 G---GCCGATATCCTGCTGCTTGATGAGCCTACCAACCATCTGGATACCGTCAACGTTGC 1640770 Query 279815 CTGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGA 279874 ||||| || |||||| | || ||| | | | | ||| |||| ||||| ||||| Sbjct 1640771 TTGGCTGGTCAACTACCTTAACA-CCTGTGG--TATCACCTCCATCATCGTCTCCCACGA 1640827 Query 279875 CTCTGGCTTCCTAGATGCCGTGTGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCT 279934 |||||| ||||| ||| ||| || |||||||||||| |||| | | ||||| Sbjct 1640828 CTCTGGTTTCCTCGATAACGTCTGTGAGTACATCATTCACTACGAGCGA---TTCAAGCT 1640884 Query 279935 CTCCAAGCACATCGGCAACCTGTC 279958 | ||| ||| || |||||||| Sbjct 1640885 CCGAAAGTACAAGGGTAACCTGTC 1640908 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 280677 CTGGGTCTGGACCCCGAGTTTACAACTCACTCTCGCATTCGCGGTCTTTCTGGAGGCCAG 280736 || ||||| || |||||| || |||||||||| || || ||||| ||||| || ||| Sbjct 1641675 CTTGGTCTCGAGCCCGAGCTTGTCTCTCACTCTCGAATCCGAGGTCTGTCTGGTGGTCAG 1641734 Query 280737 AAGGTCAAACTTGTCATCGGAGCAGCTCTGTGGCAACACCCTCACGTGATCGTTCTCGAC 280796 |||||||| ||||| | | || | ||||| | || || | ||||| || || Sbjct 1641735 AAGGTCAAGCTTGTGCTTGCCGCCTGTACCTGGCAGCGACCCCATCTTATCGTCCTTGAT 1641794 Query 280797 GAGCCTACCAACTATCTGGACCGCGAGAGCCTGGGCGCTCTG 280838 |||||||||||||||||||| || || || || |||||| Sbjct 1641795 GAGCCTACCAACTATCTGGATCGAGACTCTCTTGGAGCTCTG 1641836 >seq29 Length=2752704 Score = 132 bits (146), Expect = 1e-25 Identities = 495/764 (65%), Gaps = 23/764 (3%) Strand=Plus/Plus Query 293020 TAATACACAAGTGTTTTAAGACCCTTCTTCCATGCGTAGAACAGCATAGATGTCATAGAC 293079 || |||| | ||| || |||||||||||||| ||||||| |||| || || | | Sbjct 56880 TAGTACATACCTGTCTTGAGACCCTTCTTCCAGCCGTAGAAGTGCATGGAGGTGAG---C 56936 Query 293080 TTCAGTGTGGGAGTGGCCAGGAA---AAGGTTCATGCTCTGCGTCTGATCGACAAAGGCA 293136 || ||| || | || || || ||| | | ||| | ||| || | |||| Sbjct 56937 TTGCCCATGGTAGGGTCCTTGATGTGAATGTTGAGGGACTGAGACTGGTCAATGAAGGGG 56996 Query 293137 CCACGATCAGCAGCGAGGTCAATCACTGTCTTCATAGAGATCTCCCACGATGTCTTGTAC 293196 || ||||| || | ||||| | | |||| ||| ||||||||| ||||||||| Sbjct 56997 GATCGGTCAGCGGCCATCTCAATGATTCGCTTCTGAGAAATCTCCCACACGGTCTTGTAC 57056 Query 293197 ACTGCCTTGACATCAGGATGAATGCCAATAACCTTCTGGATAGACCCTCCGTTG---GCA 293253 | |||||| || | ||||| | ||||| | || ||||||| ||| Sbjct 57057 AGGTCCTTGATTTCCTGGGGAATGTTGGGGATGTTCTGCACGGA---TCCGTTGTCAGCA 57113 Query 293254 ATAATCTGGTTCTTCATTGTCTCGGACCA-AGTCCCACGAGCAATGAGCTCGCGGACAAG 293312 | ||| |||||||||| |||||| ||| || || || ||| || || || || Sbjct 57114 ACAATTCGGTTCTTCATGGTCTCGTTCCACAGGCCAACCT-CAACCAGGTCCTTGAGCAG 57172 Query 293313 GTAAGAGTTGACAACGGGGAACTCACCAGCGAGAGTGCGACGGCTGTAAATGTTCGAAGT 293372 | | |||||||| |||| |||||||| ||| || || ||||||||| ||||| Sbjct 57173 CCAGGGGTTGACAATCTGGAATTCACCAGCAAGAACTCGTCGAGAGTAAATGTTGGAAGT 57232 Query 293373 GATGGGTTCGGCTGCCTCAACAGACCCGCAAATCTGAGCAGTAGATGCGGTAGGCATAAG 293432 | ||| ||| |||| | || |||||| | ||| || || || ||||| | Sbjct 57233 GTAGGGCTCGAAGCACTCATTGAAACCAAGAATCTGGGAAGTGGAGGCAGTGGGCATGGG 57292 Query 293433 AGCAGTCGTCAGAGAGTTCCTCACACC---CTTCTTGACACGCGATTCGAGACCCGCCCA 293489 ||| | ||| ||||| | || ||| |||| ||| | | |||| | |||| Sbjct 57293 AGCGACCAACAGCGAGTTTCGCATACCAGTCTTCATGATCTTGGCCTTGAGATCGTCCCA 57352 Query 293490 GTCC-AGAGCAGTCTGA-GGTGTAACACCCCAGAGATGATACTGCATGATACCCTTGCTG 293547 ||| | ||| || || || || || |||||||| |||| | | ||||||| | Sbjct 57353 CTCCCACAGC--TCGGAAGGAGTCACGTTCCAGAGATCGAACTGGAGGTCACCCTTGGAG 57410 Query 293548 GCAGGAGACCCCTCAAAGGTGGGATGGGGGCCATGCTCATCAGAGAGCTCGCAAGATGCC 293607 ||||| || |||| ||||| | || || | |||| || | |||| |||| || Sbjct 57411 GCAGGGGAGCCCTGGAAGGTCTCGTAGGCACCGTCCTCAAGAGCCATCTCGTAAGAGGCT 57470 Query 293608 TCAACAGCAGCAAAGTAAATGTGCTCGAAGATCTCACGGTTGAGCTTGCGAGCCTGCTCA 293667 || ||||| | ||| ||| ||||||||||| ||||||||| |||| ||| Sbjct 57471 TCGACAGCTCCGTGGTAGATGGTCTCGAAGATCTGGATGTTGAGCTTCTTGGCCTCCTCG 57530 Query 293668 GAGTCAAACGGCA-TCTTCAGCTGGAAGAACACATCCTGCAGACCCTGTACACCTACACC 293726 || ||||| || | || | || | ||| || ||||||||| ||||| | | | Sbjct 57531 GACTCAAATGGGAGTCGT-AGAGCCATGAAGGTGTCGGCCAGACCCTGGACACCCAGAGC 57589 Query 293727 AACGGGGCGACGACGCTTGTTGCTCGTCTCTGCCTCGGGAACCG 293770 || ||| || | ||| |||| | ||| |||||||| |||| Sbjct 57590 AATGGGTCGGTGTCGCATGTTAGACTTCTTGGCCTCGGGGACCG 57633 >seq19 Length=1292317 Score = 87.8 bits (96), Expect = 4e-12 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 217837 TGCACTCTCATCCTGACAGAGGGAGACTCAGCTGCCACGCTGGCAACCGCTGGTCTTGCC 217896 ||||| ||||| || || ||||||||||| || || |||| | |||||| || | Sbjct 507002 TGCACGCTCATTCTCACTGAGGGAGACTCCGCCATGACCATGGCGAACGCTGGACTGTCT 506943 Query 217897 GTGGTGGGTCGTGAAAGGTATGGTATCTTCCCCCTCCGTGGTAAGCTGCTCAACGTGCGC 217956 ||| | ||||| ||| | ||||| ||| || || ||||||||| ||||||||||||| Sbjct 506942 GTGATTGGTCGAGAACGATATGGCGCCTTTCCTCTGCGTGGTAAGATGCTCAACGTGCGA 506883 Query 217957 GATGCCTC 217964 || || || Sbjct 506882 GAGGCGTC 506875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836418094389