Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq23 239 8e-58 seq14 159 6e-34 seq9 93.3 8e-14 seq20 87.8 3e-12 >seq23 Length=2267247 Score = 239 bits (264), Expect = 8e-58 Identities = 597/894 (67%), Gaps = 27/894 (3%) Strand=Plus/Minus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 |||||| || ||||||||||| || || || || |||||| ||||||| |||||| | Sbjct 1857828 CATGACACCGGCCTTCTGGTAGTCGGACACTCGCTTCTCGAAAAAGTTGGTCTTGCCGGC 1857769 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGGCGCCAAACTGCTTGGGGTAACC 10054 || || ||| |||||||||||| |||||||| || | | || ||||| || ||| Sbjct 1857768 CAGAGAGATGTTCTCCATGAAGTCGAAGGGGTTGGTGGAGTTATACACCTTGGAGTTACC 1857709 Query 10055 GAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAGTT 10114 ||| || | | |||||||| || |||||||||||||||| |||||| | | ||| Sbjct 1857708 GAGAGCAACTAGCAGACGGTCAGCGACAAACTCGATGTACTGGCACATCAGCTTGGCGTT 1857649 Query 10115 CATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACCGC 10174 ||| |||| || | ||||| | ||||| || ||| |||| ||| || | || | Sbjct 1857648 CATACCAAGCAGACCACAGGGCAGAGCGTCAGTAAGGAACTCCTGCTCGATGCCAACAG- 1857590 Query 10175 TTCCTCGACGATG--CTCTTTACCA-----CGTCAAGGGACAGCTTGTTCTCGAGCTTCG 10227 ||||||| ||| || | | || | | |||| | |||||| || | || Sbjct 1857589 --CCTCGACAATGACGTCCTCAACAATCTTCTTTGAGGGTC----GGTTCTCAAGGTGCG 1857536 Query 10228 AATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGG 10287 | | || || |||| | ||| || |||||||| ||| ||||| |||||||| Sbjct 1857535 AGAAAAGCAGGCAGGCAAAGTCAGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGG 1857476 Query 10288 ACAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACC 10347 | || || || |||||||| || || || |||||||| |||| | ||| || | Sbjct 1857475 AGAAGGTGAGGCCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGC 1857416 Query 10348 CGGAGAACAGAAGA--CCCTCCACGCACACCCAGGCGACGAGGCGCTCTGCGAA---GGA 10402 |||||| |||||| ||||| ||| | |||| | ||| |||||| | || ||| Sbjct 1857415 CGGAGA--AGAAGATGCCCTCGACGGCGGCAAAGGCAATGAGTCGCTCTCCAAAGGTGGA 1857358 Query 10403 GCGGTCGCGCGAAAAGTATTTCGAGGCCCACGCTGCCTTCTTTCCCACGGCA-GGGATCG 10461 ||| || | | || |||||| | ||||| |||| ||| ||||| | Sbjct 1857357 CTCTTCGTCGGAGATCCACTTGAGGGCCCAGTCGGCCTT-TTTCTTGATGCAGGGGATGG 1857299 Query 10462 TCTCGATAGCCTCGAAGAGCTTGTTACGCTCGGTCTCGTCCTCAATAAGAGCATCAAGGA 10521 ||||||| || | ||| || | | | ||||| | ||||| || | || | | Sbjct 1857298 TCTCGATGGCGTTGAACAGGTAGGTTCGCTCTTTGGGGTCCTTGATGTATGTGTCGATCA 1857239 Query 10522 GCAGGGAGTATTGCTCGCTGTGGACGCTCTCATTGTACCCCTGGTAAGCGTAGAA-CATA 10580 |||| ||||| |||| ||||| | |||| | |||| | ||||||| || Sbjct 1857238 GCAGCGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACT 1857179 Query 10581 CGTGCCGAGGGGTCCGTGACTTCCTCGGCAAAGTTGTTGTTCAGGTTCTCCATCACCATG 10640 | ||| |||| || || || ||| || | ||||||||| | || || Sbjct 1857178 TG-GCCTCGGGGGCCTGCACCTCGCCGGAGAATCGCTCAACCAGGTTCTCGTTAACGATA 1857120 Query 10641 CCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAGTGGCGCTCATCATCGTTC 10700 || ||| | | |||||||| |||| | ||| ||||||| |||||||| | ||| Sbjct 1857119 CCGTCGGAGGCAGCAAAGAATGCGAGAACGTGGGAGATGAAGAACCGCTCATCGTTGTTG 1857060 Query 10701 AGT-TTTTCACGCCAGTCTACCACATCCTGGTTGAGCTGGACCTCCTCCACGGTCCAGAA 10759 ||| | ||| | |||||| ||| |||| || | | |||||| | |||||||| Sbjct 1857059 AGTCTGTTCTC-CCAGTCACCCATGTCCTTTCCAAGATCAATCTCCTCAGCTGTCCAGAA 1857001 Query 10760 AGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGTACCGGATGGGGAA 10813 || ||| ||||||||||||||||||| | || ||| ||||| |||||||||| Sbjct 1857000 AGAGGCCTCGGCCTTCTTGTACATCTGCCAGATTTCGTGGTACTGGATGGGGAA 1856947 Score = 138 bits (152), Expect = 2e-27 Identities = 439/669 (66%), Gaps = 20/669 (3%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||||| | ||||||||| |||||| | ||| ||| | ||| | ||| || | Sbjct 1778249 TATCGCCACTGCAAGTACTGGTTAGGGGTCTTCTCCTTGTGCTGCTCGACATGCTGCAGC 1778308 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGAGTC 225097 || |||||||| | ||| | || |||| ||||| |||||| || ||| || Sbjct 1778309 GCGTGCTGGGCAATGTATCCGATTCGCAGATTGGGGTGCTTCTCGACCTTACCCTCGGTA 1778368 Query 225098 GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGGGCCA 225157 || |||||||||| || ||||||||||| || | ||| || || || |||||||| Sbjct 1778369 GGCACCACCTCGCCGGTCAGCACCTTGATGAGGGTTGACTTTCCAGCTCCGTTGGGGCCC 1778428 Query 225158 ATCACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTTGCTGA---AGATCTCA 225214 | ||| | | || |||||||| | || | | |||| ||| || || Sbjct 1778429 AGAACGGCGACTCGAGATGACATGGAAAGCGAACAAGAGGCGTTCTTGAGAGAGGGCTTG 1778488 Query 225215 GGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATG--ATGGCACGGTCCTTGG 225272 ||| || | |||| | |||| | | || || | || | ||||| ||| |||| Sbjct 1778489 GGGGCATTGGGGTAGGTGAAGGACGCATCA-ACAAC-TCGGGCAATGGCTCGGGTGTTGG 1778546 Query 225273 AAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTT--GGTCACCGCGTCCTT 225330 | || ||| ||| | ||||| ||||| || ||| ||| | ||| | Sbjct 1778547 ATCGAACACCAGACAGAATACCGGGAGGAGGGAAGGCCATCTTCAGGT--TGGTGTCGGT 1778604 Query 225331 CAGGTCGTAGTAAGATGCAGCCTCGGGTCG--CTTTGCCACGAAAGCAGACAGGTTTCCG 225388 ||| ||||||||| | |||||||||| | ||| || || | | |||||| || Sbjct 1778605 CAGAGTGTAGTAAGACTTACCCTCGGGTCGGACCTTG--ACAAAGTCGGCCAGGTTACCC 1778662 Query 225389 AGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGCGTCA 225448 || | |||||| || || ||||| ||| |||| | | ||| || || || Sbjct 1778663 TTGTAGTAGACGAGCTT---CTTATTTTCGTAGTGAGCAATGTCGGTGCAGACGGCATCC 1778719 Query 225449 AGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGGTGC 225508 ||||| |||||||| || ||||| || | || | | || || || || |||| Sbjct 1778720 AGGAAACCAGAGTCATGTGACACGATCAGAGAGGTGATGTCGGTGTGGGCCACAAGGT-A 1778778 Query 225509 GTGATG-AGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGCAG 225567 || || ||||| ||||| | || |||| |||||| ||||| || || || ||||| Sbjct 1778779 GTCCTGCAGCCACTTGACGTTTCCAACATCCAGGTGGTTAGTAGGCTCATCGAGCAGCAG 1778838 Query 225568 GATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCGGA 225627 ||||| || | ||||| ||||| || | || ||||||||| ||||| || || || Sbjct 1778839 AATGTCGGCCTTCATGAGCATGGCTCGTGCCAGCTCCAGCTTCATCTTCCATCCTCCAGA 1778898 Query 225628 CAGGGAGCC 225636 ||| | ||| Sbjct 1778899 CAGAGCGCC 1778907 >seq14 Length=2997610 Score = 159 bits (176), Expect = 6e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| |||| || | || || |||||||| || |||||||| || || || Sbjct 1826613 CCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1826672 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || |||| || ||||| || ||| Sbjct 1826673 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 1826732 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| ||||||||||| | || || || Sbjct 1826733 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACC 1826792 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | |||||| || || || || ||||||||||| || ||||||||| Sbjct 1826793 TCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATT 1826840 Score = 147 bits (162), Expect = 4e-30 Identities = 168/226 (74%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || |||| || | || || |||||||| || |||||||| || ||||| Sbjct 1945176 CCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 1945235 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || |||| || ||||| || || Sbjct 1945236 AGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 1945295 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| | ||||||| || |||||||| | || || || Sbjct 1945296 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACC 1945355 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCA 68460 || | |||||| || || || || ||||||||||| || || |||| Sbjct 1945356 TCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCA 1945401 >seq9 Length=1942798 Score = 93.3 bits (102), Expect = 8e-14 Identities = 367/566 (65%), Gaps = 20/566 (4%) Strand=Plus/Minus Query 225446 TCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGAGG 225505 || ||||| |||||||||||||| || |||||||| | | | | |||| || ||| Sbjct 1640842 TCGAGGAAACCAGAGTCGTGGGAGACGATGATGGAGGTGA--TACCACAGG-TGTTAAGG 1640786 Query 225506 TGCGTGATGAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGAAGC 225565 | ||| ||||| || |||||| | |||| ||||| ||||| || || || ||| Sbjct 1640785 TAGTTGACCAGCCAAGCAACGTTGACGGTATCCAGATGGTTGGTAGGCTCATCAAGCAGC 1640726 Query 225566 AGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCCCCG 225625 ||||| || || | ||||| ||| | |||| ||||||||| ||||| || || Sbjct 1640725 AGGATATCGGCCTTTCGGAGGACGGCAGTGGCAAGAGCCAGCTTCATCTTCCATCCACCA 1640666 Query 225626 GACAGGGAGCCGATTGAAACAGAGTGCTTAGCTTCGTCA---AAGCCGTACTCCAGGAGC 225682 ||||| ||| ||| | || | | | | |||||| || | | || || ||| Sbjct 1640665 GACAGAGAGGTGATGG--GCATTCGGGTCATC-TCGTCAGTGAACAGGAAGTCAAGCAGC 1640609 Query 225683 GTCT---GGATAATGCGCTCGGGAGAGCTGCGAGCGGCAACGTTGGGGTCGGACGAGAGG 225739 || ||| ||| | | | || | || || | |||| || || | Sbjct 1640608 TGCTTTCGGACCTCCTCCTCAGTACCGATG---GACTCACCG--GCGGTCTTTCG-GACG 1640555 Query 225740 TAATCATATACGGTCATGTCCGAGACAGACGCGTCAATGTCGTGGTCCACGTACACCGTC 225799 || || ||| | |||| | | | |||||||||||||||| ||| | || || Sbjct 1640554 TAGTCGACAACGTTGGTGTCGGCGTGGGTACCGTCAATGTCGTGGTCGACGAAGACAGTT 1640495 Query 225800 CGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCATTTGCAATCGCACGGAGCAGG 225859 || || |||||| ||||| | ||| || || ||||| || || | |||| Sbjct 1640494 CGACACTCCTCCTGGGTGGGGAAACCCTCGACCTGACCGTTGGCAATGGCTCGCATCAGG 1640435 Query 225860 GTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAATGATTCCCGCGCTTGATGTTG 225919 || ||| || || ||||| ||||| ||| ||||| | || ||||||| || | Sbjct 1640434 GTGGACTTACCAGCACCGTTAGGACCACAGAGACCGTATCGTCGGCCTCGCTTGA-GTCG 1640376 Query 225920 -AGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCAAGGGAGAACTCGCAATCGCA 225978 || | || |||||| || ||||| |||| || || || |||||||| || | || Sbjct 1640375 CAGCTGGGTTCGGTTCAGCAGAATCTTAGCACCGTAAGCCAGAGAGAACTCACAGTTACA 1640316 Query 225979 CAGGTCCTCACCCTCCTCGGTCTCCT 226004 ||| ||||| ||||| ||| ||||| Sbjct 1640315 CAGATCCTCGCCCTCGTCGTCCTCCT 1640290 Score = 93.3 bits (102), Expect = 8e-14 Identities = 121/167 (72%), Gaps = 8/167 (5%) Strand=Plus/Minus Query 224495 GAAAGCGCGCCAAGCGACTCGCGGTCAAGGAAGTTCGTCGGCTCATCCAGGATGATAACG 224554 || || || ||||| || || || || || |||| || |||||||| |||| ||||| Sbjct 1641838 GACAGAGCTCCAAGAGAGTCTCGATCCAGATAGTTGGTAGGCTCATCAAGGACGATAAGA 1641779 Query 224555 TGGGGGCACTGCCA----CAGGGCTGCACCAACCACCAGCTTCACCTTCTGACCGCCAGA 224610 ||||| | |||||| |||| | ||| ||| ||||| ||||||||||| ||||| Sbjct 1641778 TGGGGTCGCTGCCAGGTACAGG----CGGCAAGCACAAGCTTGACCTTCTGACCACCAGA 1641723 Query 224611 GAGGCCGCGGATCCGCGAGTGAGTCGTGAATTCGGGGTCAAGACCAA 224657 || || ||||| || ||||||| | ||||| || ||||||| Sbjct 1641722 CAGACCTCGGATTCGAGAGTGAGAGACAAGCTCGGGCTCGAGACCAA 1641676 >seq20 Length=352371 Score = 87.8 bits (96), Expect = 3e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 68304 CCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCC 68363 ||||| || | |||||| || ||||| || |||| || ||||| || ||||| || ||| Sbjct 352359 CCATCCTCGAGCTGCTTACCAGCGAAAATCAGTCGCTGCTGGTCCGGAGGAATTCCCTCC 352300 Query 68364 TTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTC 68401 ||||| |||||||| | ||||||| ||||||||||| Sbjct 352299 TTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTC 352262 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622065911880