Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq29 315 7e-81 seq13 140 3e-28 >seq29 Length=2752704 Score = 315 bits (348), Expect = 7e-81 Identities = 1087/1666 (65%), Gaps = 46/1666 (3%) Strand=Plus/Minus Query 93718 TACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCT-CAAGATGGATGGCAG 93776 ||| | ||||||| |||||| || |||||| | ||||| || | || | | || Sbjct 58675 TACAACTACTTTGGCTTCAAGACCCTGGAGCGAGCATACCTGCTGCGAG-TCAACGGTGC 58617 Query 93777 GGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCACGA 93836 ||| |||||||||| || ||| || | ||||| ||| | |||| || |||||| || | Sbjct 58616 TGTTGCCGAGCGACCCCAACAGATGATCATGCGAGTCTCTGTCGGTATCCACGGCGACAA 58557 Query 93837 CAT-GCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCCA 93895 ||| ||| ||| | || || | ||| | ||| | || || Sbjct 58556 CATTGCCCGGGCCATTGAGACCTA-CAACTATATGTCTCAGAAGTACTTCACTCACGCTT 58498 Query 93896 CCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGA 93955 |||| || || | |||||| || || || ||| |||||||| ||||||||||| | | Sbjct 58497 CCCCCACTCTCTACAACGCCGGAACTCCCCAGCCTCAGATGTCGTCGTGTTTCCTTGTCA 58438 Query 93956 CGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCT 94015 | |||| |||||||||| ||| || | ||| | |||||| |||||| || | Sbjct 58437 ACATGAAGGACGACTCCATCGACGGCATCTACGATACCCTCAAAACCTGTGCTCTGATTT 58378 Query 94016 CAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACA 94075 | || | || || || ||||| | | ||||| || | || || | || ||||||| Sbjct 58377 CCAAGTCTGCCGGCGGTATCGGTCTGTCTATCCACAACATCCGAGCTACTGGCTCCTACA 58318 Query 94076 TCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACG 94135 | || || || || ||||||||||| |||| || ||||| || |||| |||||| Sbjct 58317 TTGCTGGAACTAACGGAACCTCCAACGGTATCGTGCCCATGCTGCGTGTCTATAACAACA 58258 Query 94136 CGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCG 94195 | || || ||||| || ||||| || | | | ||| | || || | || || | Sbjct 58257 CCGCCCGATACGTTGATCAGGGAGGCAACAAGCGACCTGGTGCCTTTGCAATGTACCTTG 58198 Query 94196 AGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATC 94255 |||||||||||| || | | ||| ||| ||||||||||||||||| || || Sbjct 58197 AGCCCTGGCACGACGATATCTTCGAGTTCTGCGAGCTGCGAAAGAACCACGGAAAGGA-- 58140 Query 94256 TGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAAC 94312 |||| | ||| ||||||| ||| ||||| ||| | || ||||| || ||| | | Sbjct 58139 -AGAGATTCGAGCCCGAGACCTGTTCCTGGCTCTGTGGATCCCCGACCTGTTCATGGAGC 58081 Query 94313 GCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCCG 94372 | |||||| | ||| | | |||| || | || ||||| || || ||||| || || Sbjct 58080 GAGTCGAGCAGAACGCTGAATGGACCCTGATGTGCCCCAACGAGTGCCCCGGTCTTGACG 58021 Query 94373 ACGTTTGTG--GATCGCGTTTTGAAG-ACTTGTATGCTCGTTACGAATCGCAGGG-CAAG 94428 |||| | || ||| | |||| ||| | |||| | | ||||| | |||| | || Sbjct 58020 ACGTCTATGGTGAT-GAGTTT--AAGCAGCTGTACGAGCAGTACGAGAAGGAGGGCCGAG 57964 Query 94429 GCC-AGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGA 94487 ||| | ||| || ||| |||||||||| | || || | ||| ||| || Sbjct 57963 GCCGACGAA--CCATCCCTGCCCAGAAGCTGTGGTACCACATTCTCGACTGCCAGACCGA 57906 Query 94488 GACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCA 94547 | | || | |||| ||| ||| ||||||||| |||| |||||||||||| || | Sbjct 57905 GTCCGGCAACCCCTTCATGCTGTACAAGGACTCCTGCAACCGAAAGTCCAACCAGAAGAA 57846 Query 94548 CCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGA 94607 |||||| || ||| || || |||||| |||||||| ||||| ||||||| || Sbjct 57845 CCTCGGAACAATTAAGTCTTCTAACCTGTGCTGTGAGATTGTAGAGTACTCTTCTCCTGA 57786 Query 94608 CGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGT---GCGAGATGC 94664 ||| | ||||| || ||||||| |||||| ||| ||||||| || ||||| Sbjct 57785 TGAGGTCGCTGTCTGCAACCTGGCTTCCATCGCTCTGCCCACTTTTGTTACTCGAGA--- 57729 Query 94665 CTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTTCGCGGGAAGG--ATG 94722 | |||| | ||| ||| | ||| | || |||| || | || |||| || Sbjct 57728 CGACAC--CAACTCGTTC-TACGACTTCAAGAAGCTGCACGACATTGC--CAAGGTCATT 57674 Query 94723 GTCTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAAC 94782 || ||||| ||| | |||||| |||| |||||| ||||| ||||| |||| Sbjct 57673 GTGCGAAACCTCAACGCTATCATCGACCGAAACTACTACCCGGTCCCCGAGGCCAAGAAG 57614 Query 94783 TCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTG 94842 || ||| || || || ||||| | | || ||||||||| | || ||| | | || Sbjct 57613 TCTAACATGCGACACCGACCCATTGCTCTGGGTGTCCAGGGTCTGGCCGACACCTTCATG 57554 Query 94843 ATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTGAATTTGAACATATTCGAA 94902 | || || || | || || | || || | | || | | || ||||| Sbjct 57553 GCTCTACGACTCCCATTTGAGTCCGAGGAGGCCAAGAAGCTCAACATCCAGATCTTCGAG 57494 Query 94903 AGCATTTATTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACGGCGGGCCA 94962 | ||| || |||| || | || || | | |||| |||||| | | Sbjct 57493 ACCATCTACCACGGAGCTGTCGAAGCCTCTTACGAGATGGCTCTTGAGGACGGTG---CC 57437 Query 94963 CACGAATCGTTCCGCGGATCGCCCTTGGAAC-AGGGCATTTTTCAGTTCGACCTCTGGGG 95021 |||| | |||| || || |||| | |||| | |||||||| |||||| Sbjct 57436 TACGAGACCTTCCAGGGCTC-CCCTGCCTCCAAGGGTGACCTCCAGTTCGATCTCTGGAA 57378 Query 95022 TGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTATCAAACACGG 95081 |||| || || | |||| || ||||| | ||| || | | || || || Sbjct 57377 CGTGACTCCTTCCGAGCTGTGGGAGTGGGACGATCTCAAGGCCAAGATCATGAAGACTGG 57318 Query 95082 TGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCAGATCCTTGG 95141 | || |||| ||||| | || || ||||||||||| |||||||| | ||||| ||||| Sbjct 57317 TATGCGAAACTCGCTGTTGGTCGCTCCCATGCCCACTGCCTCCACTTCCCAGATTCTTGG 57258 Query 95142 CAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGTGCTCGCCGG 95201 ||| |||| ||||| |||| ||| |||||| | ||| | || || || || || Sbjct 57257 TTTCAATGAGTGCTTCGAGCCCTACACTTCCAACATTTACTCTCGACGAGTTCTTGCTGG 57198 Query 95202 GGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGGTG---TGTG 95258 ||||||| | ||||| || || ||||||| || | || || |||| Sbjct 57197 TGAATTCCAGATTGTCAACCCCTGGCTGCTCAAGGACCTG--GT-TGAGGTTGGCCTGTG 57141 Query 95259 GGGTGACAAGGTCAAGAACC-AACTGCTACGCGCCAACGGCTCCGTCCAGAACATCCCGC 95317 | || | | ||||||| || || | | | |||||| ||||| ||||||||||| Sbjct 57140 GAACGAGACCATGAAGAACCGAATTGTTGC-TGACAACGGATCCGTGCAGAACATCCCCA 57082 Query 95318 AAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGAT 95363 | || || |||| ||||||| || |||||||||||||||||||| Sbjct 57081 ACATTCCCCAGGAAATCAAGGACCTGTACAAGACCGTGTGGGAGAT 57036 >seq13 Length=841849 Score = 140 bits (154), Expect = 3e-28 Identities = 483/741 (65%), Gaps = 22/741 (3%) Strand=Plus/Plus Query 93905 TGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGG 93964 ||||||| || || ||||| | || | || || ||||||||| || | | | Sbjct 421702 TGTTCAATGCAGGAACCCCCCAGGGCCAACTTTCGTCCTGTTTCCTGGTGGCCATGGCAG 421761 Query 93965 CCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCATCTCAAAATACG 94024 | ||||||||| ||| || | ||||| ||||| ||||| ||||| ||| || Sbjct 421762 CAGACTCCATCGACGGCATCTACGACACGCTCAAAACGTGTGCCCAAATCTCCAAAACCG 421821 Query 94025 CGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCCTACATC-CGCGGT 94083 | || || ||||| | | ||||| || | | |||| ||| | ||| | ||| Sbjct 421822 CCGGAGGTATCGGCTTGCATATCCACAACATTAGAGCCAAGGGAGCTCTCATTACTGGGT 421881 Query 94084 ACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGC 94143 ||| || | ||| ||| |||| ||||||||| | || ||||||||| | || || Sbjct 421882 CTCAA-GGAAGATCCTCCGGAATCGTTCCTATGCTCAGAGTGTTCAACAACACTGCTCGG 421940 Query 94144 TACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGG 94203 ||||||||||| || || | | || | || || || ||| | ||||||||| Sbjct 421941 TACGTGGACCAAGGAGGAAACAAACGTCCAGGAGCGTTTGCAGTGTATTTGGAGCCCTGG 422000 Query 94204 CACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAACGATCTGGAGA-- 94261 || || ||| | || |||| | | ||||| || ||||| || ||| ||| | Sbjct 422001 CATGCAGACATTTTGGATTTCCTGAATCTGCGCAAAAACCATGGTGCCGA---GGAAAAT 422057 Query 94262 -GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG---AAACGCGTC 94317 | ||| | |||||||||||||| | |||||||| ||||| |||||| ||| ||| Sbjct 422058 CGAGCCCGTGACCTCTTCTACGCCTTATGGGTGCCTGACCTGTTTATGCGCAAA---GTC 422114 Query 94318 GAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCC--GGACTGTCCGACG 94375 ||||| | ||| |||||| ||||||| ||| | ||| || ||| |||| | Sbjct 422115 GAGAATGGCGAAAAGTGGTCTCTTTTCTGTCCCA--GAAAGGCCCCAGGTCTGGCCGATG 422172 Query 94376 TTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAGGCCAGGA 94435 |||| ||| | || || | ||| | |||||| || |||| || Sbjct 422173 TTTGGGGAGAGGAATTCGACCGCAAGTACGAGGATTACGAGTCTAAGGGACTTTACAACT 422232 Query 94436 AGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACG-TACAGGTGGAGACGGGT 94494 | || || || | |||||| | || | |||| ||| | || || || Sbjct 422233 CGCAGATTGACGCCCAGGAGCTGTTCAAGGCCATTCT-GACGAGCCAGATTGAAACAGGA 422291 Query 94495 ACGCCCTACATCTTGTTCAAGGAC-TCTGTCAACGCCAAGTCCAACCAGCAGCACCTCGG 94553 || | ||| ||| || ||| |||| ||||| || ||||||||| || ||||||| Sbjct 422292 GGACCTTTCATGCTGTATAAAGACAGCTGT-AACGCGAAATCCAACCAGAAGAACCTCGG 422350 Query 94554 GGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGACGAGAT 94613 ||||| || ||| |||| |||||||||||| |||| | ||||| |||||| | Sbjct 422351 CACAATCAAATCGTCCAATTTGTGTACCGAGATTGTCCAGTACTCGTCTCCTGACGAGGT 422410 Query 94614 TGCTGTGTGTAACCTGGGCTC 94634 |||||| || || |||| ||| Sbjct 422411 TGCTGTTTGCAATCTGGCCTC 422431 Score = 107 bits (118), Expect = 2e-18 Identities = 199/292 (68%), Gaps = 0/292 (0%) Strand=Plus/Plus Query 95073 CAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCA 95132 |||||||||| || |||| | || ||||| ||||||||||| || || ||||| |||| Sbjct 422864 CAAACACGGTATGCGAAACTCTCTACTTGTTGCCCCCATGCCTACAGCTTCCACATCGCA 422923 Query 95133 GATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGT 95192 ||| || ||| ||||||||| |||||||| | ||| |||||| | ||| | ||||| Sbjct 422924 GATTCTGGGCCACAACGAGTGTTTCGAACCGTACACGTCCAACATTTACCTTCGTCGGGT 422983 Query 95193 GCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTGGG 95252 | || || || || | ||| | ||| || || | || || | ||||| Sbjct 422984 CCAGGCTGGTGAGTTTCTCGTGGTGAACCAGTGGCTGATGAAAGATCTAATCAAACTGGG 423043 Query 95253 TGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAACAT 95312 ||||| || || | || |||| | | | || ||||||||| |||||| ||| Sbjct 423044 CATGTGGACCGAGGAGATGAAAAACCGCATCATTCACGACAACGGCTCGATCCAGAGCAT 423103 Query 95313 CCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATC 95364 | | || ||||| || ||||| || | |||| || | |||||| ||| Sbjct 423104 CACCCAGATACCCGAACACATCCGAGCCGTGTACAGAACTGCGTGGGAAATC 423155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494723020662840