Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22]
29 sequences; 20,590,669 total letters
Query= NC_011616.1
Length=148634
Score E
Sequences producing significant alignments: (Bits) Value
seq23 158 1e-33
seq14 111 1e-19
seq29 87.8 2e-12
>seq23
Length=2267247
Score = 158 bits (174), Expect = 1e-33
Identities = 357/531 (67%), Gaps = 17/531 (3%)
Strand=Plus/Plus
Query 47046 CTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAG 47105
|| || |||| |||||| ||| |||||| | | ||||||||| |||||| | |||
Sbjct 1857280 CTGTTCAACGCCATCGAGACCATCCCCTGCATCAAGAAAAAGGCCGACTGGGCCCTCAAG 1857339
Query 47106 TACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAG 47165
| || ||||| | ||| | | || || | || || || ||| |||||||
Sbjct 1857340 TGGATCTCCGACGAAGAGTCCACCTTTGGAGAGCGACTCATTGCCTTTGCCGCCGTCGAG 1857399
Query 47166 GGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATG 47225
||| |||||||||| ||| || || | || || | | || | ||| | |||
Sbjct 1857400 GGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATG 1857459
Query 47226 CCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTT 47285
|| |||||||| || ||||||||| ||||| ||||||| || |||||||| |||||
Sbjct 1857460 CCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGAGACGAGGGTCTGCACACTGACTTT 1857519
Query 47286 GCCTGTCTC---TACTACAACACT-AGAGTCGATCA--AAAGTTGGACGTGCCCACCGTC 47339
||||| || | || || | ||| ||| | |||| | || |
Sbjct 1857520 GCCTGCCTGCTTTTCTCGCACCTTGAGAACCGACCCTCAAAGAAGATTGT--------TG 1857571
Query 47340 AGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCC 47399
|| ||| | ||| ||| || || | ||| ||| |||||| | | || |||||||||
Sbjct 1857572 AG-GACGTCATTGTCGAGGCTGTTGGCATCGAGCAGGAGTTCCTTACTGACGCTCTGCCC 1857630
Query 47400 GAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGAC 47459
| | | || |||||||| || ||||| | |||||||||| |||||||| |||
Sbjct 1857631 TGTGGTCTGCTTGGTATGAACGCCAAGCTGATGTGCCAGTACATCGAGTTTGTCGCTGAC 1857690
Query 47460 CGCCTGCTCGTTCAGCTAAAGTATC-CCAAGATTTACCACACCGAGAATCCATTCGAGTT 47518
|| ||||| ||| || ||| | ||||| | || || || || || ||||| ||
Sbjct 1857691 CGTCTGCTAGTTGCTCTCG-GTAACTCCAAGGTGTATAACTCCACCAACCCCTTCGACTT 1857749
Query 47519 TATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 47569
||| | ||||| || || | |||||||||||||||||||||||||| ||
Sbjct 1857750 CATGGAGAACATCTCTCTGGCCGGCAAGACCAACTTTTTCGAGAAGCGAGT 1857800
>seq14
Length=2997610
Score = 111 bits (122), Expect = 1e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
||||| || | ||||| || | ||| | || ||||| || || || ||||| ||
Sbjct 1826613 CCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1826672
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || ||||| || || ||| |||| | ||||||||| || || ||
Sbjct 1826673 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 1826732
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| ||| || ||||| |||| |||| |||||| | | ||| ||
Sbjct 1826733 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATGGTGTCGGAAGACTCCAC 1826791
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113
|||| ||| | || || ||||| || || || ||||||||||||||
Sbjct 1826792 CTCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCAT 1826839
Score = 95.1 bits (104), Expect = 1e-14
Identities = 166/238 (70%), Gaps = 3/238 (1%)
Strand=Plus/Plus
Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946
|| || || | ||||| || | ||| | || ||||| || || || ||||| |||
Sbjct 1945176 CCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 1945235
Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006
| || || || || ||||| || || ||| |||| | ||||||||| || || ||
Sbjct 1945236 AGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 1945295
Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065
|| |||||||||||| ||| || ||||| |||| || | |||||| | ||| ||
Sbjct 1945296 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCAATGGTGTCAGAGGACTCCAC 1945354
Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA-TGGCTTATTT 127122
|||| ||| | || ||||| || || || || ||||| || |||| ||| ||| ||
Sbjct 1945355 CTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCACTGGGTTAGTT 1945412
>seq29
Length=2752704
Score = 87.8 bits (96), Expect = 2e-12
Identities = 233/346 (67%), Gaps = 10/346 (3%)
Strand=Plus/Plus
Query 147219 CAGCCCGAGACCTCCGCCCAGA-TTCGAAATCAAAGCGGACTCGTGCAAGGTCTTGTAGA 147277
||| |||| ||| ||| | ||| || ||||||| ||| | | | ||| | |||||
Sbjct 58352 CAGACCGATACCGCCGGC-AGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAGA 58410
Query 147278 TGCCGTCGATGCTGTCTTCCTTGATGCATTG--CAGGAAACACGAACACATTTGGGGACG 147335
||||||||||| ||| ||||| ||| ||| ||||||||||| |||| || || |
Sbjct 58411 TGCCGTCGATGGAGTCGTCCTTCATG--TTGACAAGGAAACACGACGACATCTGAGGCTG 58468
Query 147336 ACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTGC-CCAGACTCATCA 147394
|| || || | || |||||| ||||| ||||| || | | || |||
Sbjct 58469 GGGAGTTCCGGCGTTGTAGAGAGTGGGGGAAGCGTGAGTGAA-GTACTTCTGAGACATAT 58527
Query 147395 ATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGACGCGCA 147454
| | || || |||||||| | || || |||||||| || | | | ||| ||||
Sbjct 58528 AGTTGTAGGTCTCAATGGCCCGGGCAATGTTGTCGCCGTGGATACCGACAGAGACTCGCA 58587
Query 147455 TGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTGACTTTTAATAGATATCCATTGG 147514
||| ||| || |||||||| || |||| | | |||||| | || ||| | | |
Sbjct 58588 TGATCATCTGTTGGGGTCGCTCGGCAACAGCACCGTTGACTCGCAGCAGGTATGC-TCGC 58646
Query 147515 T-CAGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTCCCTGTTGT 147559
| ||| || ||||| |||||||| |||||| | |||| | || ||
Sbjct 58647 TCCAGGGTCTTGAAGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGT 58692
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 475500627630960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |