Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq23 158 1e-33 seq14 111 1e-19 seq29 87.8 2e-12 >seq23 Length=2267247 Score = 158 bits (174), Expect = 1e-33 Identities = 357/531 (67%), Gaps = 17/531 (3%) Strand=Plus/Plus Query 47046 CTTTTGAACGGTTTCGAGAGCATGCCCTGCGTGCGCAGAAAGGCCGAGTGGGCCATGAAG 47105 || || |||| |||||| ||| |||||| | | ||||||||| |||||| | ||| Sbjct 1857280 CTGTTCAACGCCATCGAGACCATCCCCTGCATCAAGAAAAAGGCCGACTGGGCCCTCAAG 1857339 Query 47106 TACATTGAAAACGAAAACGTCACTCTGGCCGAACGTTTGATCGCTTTCGCCATCGTCGAG 47165 | || ||||| | ||| | | || || | || || || ||| ||||||| Sbjct 1857340 TGGATCTCCGACGAAGAGTCCACCTTTGGAGAGCGACTCATTGCCTTTGCCGCCGTCGAG 1857399 Query 47166 GGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGAGTTATG 47225 ||| |||||||||| ||| || || | || || | | || | ||| | ||| Sbjct 1857400 GGCATCTTCTTCTCCGGCTCTTTCGCCTCCATCTTCTGGCTCAAGAAGCGAGGTCTCATG 1857459 Query 47226 CCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACCAACTTT 47285 || |||||||| || ||||||||| ||||| ||||||| || |||||||| ||||| Sbjct 1857460 CCTGGCCTCACCTTCTCCAACGAGCTCATCTCCCGAGACGAGGGTCTGCACACTGACTTT 1857519 Query 47286 GCCTGTCTC---TACTACAACACT-AGAGTCGATCA--AAAGTTGGACGTGCCCACCGTC 47339 ||||| || | || || | ||| ||| | |||| | || | Sbjct 1857520 GCCTGCCTGCTTTTCTCGCACCTTGAGAACCGACCCTCAAAGAAGATTGT--------TG 1857571 Query 47340 AGCGACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGCCC 47399 || ||| | ||| ||| || || | ||| ||| |||||| | | || ||||||||| Sbjct 1857572 AG-GACGTCATTGTCGAGGCTGTTGGCATCGAGCAGGAGTTCCTTACTGACGCTCTGCCC 1857630 Query 47400 GAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCGAC 47459 | | | || |||||||| || ||||| | |||||||||| |||||||| ||| Sbjct 1857631 TGTGGTCTGCTTGGTATGAACGCCAAGCTGATGTGCCAGTACATCGAGTTTGTCGCTGAC 1857690 Query 47460 CGCCTGCTCGTTCAGCTAAAGTATC-CCAAGATTTACCACACCGAGAATCCATTCGAGTT 47518 || ||||| ||| || ||| | ||||| | || || || || || ||||| || Sbjct 1857691 CGTCTGCTAGTTGCTCTCG-GTAACTCCAAGGTGTATAACTCCACCAACCCCTTCGACTT 1857749 Query 47519 TATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGT 47569 ||| | ||||| || || | |||||||||||||||||||||||||| || Sbjct 1857750 CATGGAGAACATCTCTCTGGCCGGCAAGACCAACTTTTTCGAGAAGCGAGT 1857800 >seq14 Length=2997610 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | ||||| || | ||| | || ||||| || || || ||||| || Sbjct 1826613 CCACCTCGAAGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAA 1826672 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || ||| |||| | ||||||||| || || || Sbjct 1826673 AGGGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGA 1826732 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||||| |||| |||| |||||| | | ||| || Sbjct 1826733 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCGATGGTGTCGGAAGACTCCAC 1826791 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | || || ||||| || || || |||||||||||||| Sbjct 1826792 CTCGAGGGTGATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCAT 1826839 Score = 95.1 bits (104), Expect = 1e-14 Identities = 166/238 (70%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || | ||||| || | ||| | || ||||| || || || ||||| ||| Sbjct 1945176 CCTCCTCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAA 1945235 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || || || ||||| || || ||| |||| | ||||||||| || || || Sbjct 1945236 AGAGTTCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGG 1945295 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||||| ||| || ||||| |||| || | |||||| | ||| || Sbjct 1945296 ATTCCCTCCTTGTCCTGGATCTTGGACTTGACGTTG-TCAATGGTGTCAGAGGACTCCAC 1945354 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCA-TGGCTTATTT 127122 |||| ||| | || ||||| || || || || ||||| || |||| ||| ||| || Sbjct 1945355 CTCGAGGGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCACTGGGTTAGTT 1945412 >seq29 Length=2752704 Score = 87.8 bits (96), Expect = 2e-12 Identities = 233/346 (67%), Gaps = 10/346 (3%) Strand=Plus/Plus Query 147219 CAGCCCGAGACCTCCGCCCAGA-TTCGAAATCAAAGCGGACTCGTGCAAGGTCTTGTAGA 147277 ||| |||| ||| ||| | ||| || ||||||| ||| | | | ||| | ||||| Sbjct 58352 CAGACCGATACCGCCGGC-AGACTTGGAAATCAGAGCACAGGTTTTGAGGGTATCGTAGA 58410 Query 147278 TGCCGTCGATGCTGTCTTCCTTGATGCATTG--CAGGAAACACGAACACATTTGGGGACG 147335 ||||||||||| ||| ||||| ||| ||| ||||||||||| |||| || || | Sbjct 58411 TGCCGTCGATGGAGTCGTCCTTCATG--TTGACAAGGAAACACGACGACATCTGAGGCTG 58468 Query 147336 ACACGTGCCCGCCGCAAACAGCGTGGGGCTGGCGTGCGTGAACGTGC-CCAGACTCATCA 147394 || || || | || |||||| ||||| ||||| || | | || ||| Sbjct 58469 GGGAGTTCCGGCGTTGTAGAGAGTGGGGGAAGCGTGAGTGAA-GTACTTCTGAGACATAT 58527 Query 147395 ATTGATACGTTTCAATGGCGCTCATAACGTCATCGCCGTGAATGGCCAGGGCGACGCGCA 147454 | | || || |||||||| | || || |||||||| || | | | ||| |||| Sbjct 58528 AGTTGTAGGTCTCAATGGCCCGGGCAATGTTGTCGCCGTGGATACCGACAGAGACTCGCA 58587 Query 147455 TGAGCATGTGCTGGGGTCGTTCCGCAATCACGTCATTGACTTTTAATAGATATCCATTGG 147514 ||| ||| || |||||||| || |||| | | |||||| | || ||| | | | Sbjct 58588 TGATCATCTGTTGGGGTCGCTCGGCAACAGCACCGTTGACTCGCAGCAGGTATGC-TCGC 58646 Query 147515 T-CAGAGTTTTGAAACCAAAGTACTTGTAGTCGTAGTCCCTGTTGT 147559 | ||| || ||||| |||||||| |||||| | |||| | || || Sbjct 58647 TCCAGGGTCTTGAAGCCAAAGTAGTTGTAGGTGAAGTCTCGGTCGT 58692 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500627630960