Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq23 250 4e-61 seq29 179 6e-40 seq13 129 9e-25 >seq23 Length=2267247 Score = 250 bits (276), Expect = 4e-61 Identities = 580/865 (67%), Gaps = 17/865 (2%) Strand=Plus/Minus Query 159628 CTTCTTGTATTGCGACACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGA 159687 ||||| ||| | ||||| |||||||||||||||||||||||| ||| || || Sbjct 1857816 CTTCTGGTAGTCGGACACTCGCTTCTCGAAAAAGTTGGTCTTGCCGGCCAGAGAGATGTT 1857757 Query 159688 TTCCATGAACCCGAATGGGTTCTTCACGTGATAGCGCTTCGGAAAT-CCGAGAGCCGCCA 159746 |||||||| |||| ||||| | || ||| ||| ||| | |||||||| | | Sbjct 1857756 CTCCATGAAGTCGAAGGGGTTGGTGGAGTTATACACCTT-GGAGTTACCGAGAGCAACTA 1857698 Query 159747 GCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCA 159806 ||| | ||| || ||||| |||||||| |||||| ||| ||| || || |||| Sbjct 1857697 GCAGACGGTCAGCGACAAACTCGATGTACTGGCACATCAGCTTGGCGTTCATACCAAGCA 1857638 Query 159807 GCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAA 159866 | | | ||| || || || | || ||||||| ||| || | || || ||| |||| Sbjct 1857637 GACCACAGGGCAGAGCGTCAGTAAGGAACTCCTGCTCGATGCCAACAGCCTCG---ACAA 1857581 Query 159867 TC---TGCGAGACACG-TTCGTACCCCGGCT-TGCCCAAAATGTGGTCCTTAAACAGGAG 159921 | | | ||| ||| | | | | | ||| ||| | || || || Sbjct 1857580 TGACGTCCTCAACAATCTTCTTTGAGGGTCGGTTCTCAA-----GGTGCGAGAAAAGCAG 1857526 Query 159922 GCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAG 159981 ||| |||||||| |||||| |||||||| || ||||||| ||||||||| | | |||| Sbjct 1857525 GCAGGCAAAGTCAGTGTGCAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAG 1857466 Query 159982 GCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAA 160041 ||| ||||||| || ||| |||||||| || |||| || |||| ||| || || Sbjct 1857465 GCCAGGCATGAGACCTCGCTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAA 1857406 Query 160042 GATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATG 160101 ||| ||||| ||||| ||||| || | ||| | ||| ||||| | || | ||| Sbjct 1857405 GATGCCCTCGACGGCGGCAAAGGCAATGAGTCGCTCTCCAAAGGTGGACTCTTCGTCGGA 1857346 Query 160102 GGTCCACCTTTTGGCCCATTCAGCCTTCTTTGCGATGCACGGCATGCGCTCGACGGCGTT 160161 | ||||| | |||||| || ||||| || |||||| || ||| ||||| |||||| Sbjct 1857345 GATCCACTTGAGGGCCCAGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGCGTT 1857286 Query 160162 AAACAA-TCTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACA 160220 |||| | || | |||| || |||||||| || | |||||| |||||| Sbjct 1857285 GAACAGGTAGGTTC-GCTCTTTGGGGTCCTTGATGTATGTGTCGATCAGCAGCGAGTAGG 1857227 Query 160221 TTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCCAGAT 160280 | || | ||| | || || || ||||| ||| |||||| | | ||||| | Sbjct 1857226 TCTCGGAGTGGATGTTCTCCATCATGATCTGGAAGCCGTAGAAGCACTTGGCCTCGGGGG 1857167 Query 160281 ACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCG 160340 ||||||||| | ||| | | | |||| || | ||||| | ||||||| ||| | Sbjct 1857166 CCTGCACCTCGCCGGAGAATCGCTCAACCAGGTTCTCGTTAACGATACCGTCGGAGGCAG 1857107 Query 160341 CAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCC 160400 ||||||| || | ||||| |||||||| | ||| || ||||||||||| || |||| Sbjct 1857106 CAAAGAATGCGAGAACGTGGGAGATGAAGAACCGCTCATCGTTGTTGAGTCTGTTCTCCC 1857047 Query 160401 AGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGCCTGAGCAG 160460 ||| || ||| | | | ||||| ||| || || |||| | |||| || Sbjct 1857046 AGTCACCCATGTCCTTTCCAAGATCAATCTCCTCAGCTGTCCAGAAAGAGGCCTCGGCCT 1856987 Query 160461 TTTTGTACATGGCCCAGATGGCGTG 160485 | |||||||| |||||| |||| Sbjct 1856986 TCTTGTACATCTGCCAGATTTCGTG 1856962 >seq29 Length=2752704 Score = 179 bits (198), Expect = 6e-40 Identities = 334/484 (69%), Gaps = 10/484 (2%) Strand=Plus/Plus Query 203849 GTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTCTTTAGG 203908 |||||||| |||| | | |||| | || ||| ||| |||||||| || ||||| || Sbjct 56841 GTGAACTGGATGGGGGCAGCAGCAGCCATGGTTCGCAGGTAGTACATACCTGTCTTGAGA 56900 Query 203909 CCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGGGTCGGCCATG 203968 ||||||| ||| ||||| | ||||||||| | || |||| || | | ||||| ||| Sbjct 56901 CCCTTCTTCCAGCCGTAGAAGTGCATGGAGGTGAGCTTGCCCATGGTAGGGTCCTTGATG 56960 Query 203969 TGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCATATTGATA 204028 |||||||| || ||||| ||||| ||||| || | || || |||||||| | || Sbjct 56961 TGAATGTTGAGGGACTGAGACTGGTCAATGAAGGGGGATCGGTCAGCGGCCATCTCAATG 57020 Query 204029 ATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGTGTTGAGGCACA 204088 || |||||| |||||||||||||| |||||| ||| ||| || | | || || | Sbjct 57021 ATTCGCTTCTGAGAAATCTCCCACACGGTCTTGTACAGGTCCTTGATTTCCTGGGGAATG 57080 Query 204089 TCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTC---TCATCCTCGTCTCCTC 204144 | | | || ||| | || |||||||| || | | || || || | ||||| | Sbjct 57081 T-TGGGGATGTTCTGCACGGATCCGTTGTCAGCAACAATTCGGTTCTTCATGGTCTCGT- 57138 Query 204145 CCCCCACATGCCCAACCT-GATCAGCTCCCGCACCAGGTGGGGGTTGATGATCTGAAAGT 204203 ||||| | ||||||| | ||| ||| | ||| |||||||| ||||| || | Sbjct 57139 --TCCACA-GGCCAACCTCAACCAGGTCCTTGAGCAGCCAGGGGTTGACAATCTGGAATT 57195 Query 204204 CTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCTCGTTGT 204263 | || | || || | ||| | | | | |||| ||| | || ||||| ||| ||| Sbjct 57196 CACCAGCAAGAACTCGTCGAGAGTAAATGTTGGAAGTGTAGGGCTCGAAGCACTCATTGA 57255 Query 204264 TGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGTTGCGCA 204323 || | |||||| | ||| ||| |||||||||||||| | | ||| ||||| |||| Sbjct 57256 AACCAAGAATCTGGGAAGTGGAGGCAGTGGGCATGGGAGCGACCAACAGCGAGTTTCGCA 57315 Query 204324 CACC 204327 ||| Sbjct 57316 TACC 57319 >seq13 Length=841849 Score = 129 bits (142), Expect = 9e-25 Identities = 511/787 (65%), Gaps = 28/787 (4%) Strand=Plus/Minus Query 203836 CGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACAT 203895 ||| |||||||| || ||||| || || | | |||||| |||||||||| ||||| Sbjct 423362 CGTTTTGTCCACAGTAAACTGGATAGCATGAGCAGCAGGCGGAGTTCTCAGATAATACAT 423303 Query 203896 GCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGT- 203954 ||| || || || || || ||| || | | ||||||| | | ||| | || | Sbjct 423302 GCCTGTTTTAAGTCCAGCCTTCCAGCCATGGAAATGCATGGCTGTGATTTTTC-CATGCG 423244 Query 203955 TGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTG 204014 | || | |||| |||||| || |||||| |||||| ||| | |||||||| | | Sbjct 423243 TAATCTCAGGCATGAAAATGTTAAGCGACTGGGATTGGTCAATGTAGGGCGCCCGTGCAG 423184 Query 204015 CGGCCATAT---TGATAAT--GGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTC 204069 | ||||||| ||||| | || | | || || |||||| | || || ||||| | Sbjct 423183 CAGCCATATCAATGATATTACGGGCCT-TG----ATTTCCCACGCAGTTCTGTACACGGC 423129 Query 204070 TCTGGTGTGTTGAGGCACATCTTCCC-ACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGT 204127 || | |||||| || | ||| | | ||| ||||||||||||||| || | Sbjct 423128 TCGGATGTGTTCGGGTA--TCTGGGTGATGCTCTGGATCGAGCCGTTGTCGTGAATGATG 423071 Query 204128 CTCATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGG 204187 | | || ||||||| ||||||||||| |||| || || || ||| || Sbjct 423070 CGGTTTTTCATCTCCTCGGTCCACATGCCCAGTTTGATTAGATCTTTCATCAGCCACTGG 423011 Query 204188 TTGATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGT 204247 || | | |||| || || | | | |||| || | | | |||| ||| | ||| Sbjct 423010 TTCACCACGAGAAACTCACCAGCCTGGACCCGACGAAGGTAAATGTTGGACGTGTACGGT 422951 Query 204248 TCGAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGG 204307 ||||| |||||||| ||| | |||||| | ||| || || |||||||| || | Sbjct 422950 TCGAAACACTCGTTGTGGCCCAGAATCTGCGATGTGGAAGCTGTAGGCATGGGGGCAACA 422891 Query 204308 AGCAGGGAGTTGCGCACACCGTATTTTTGGACCCTGCGCTTCAGAGAGGTCCAGTC---G 204364 || || ||||| |||| ||||| ||| || | || ||| || | ||| || | Sbjct 422890 AGTAGAGAGTTTCGCATACCGTGTTTGGCGAGCTTGGTCTTGAGGCGAGCCCAATCCCAG 422831 Query 204365 TGCATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGG 204424 | ||| || ||| || | ||||| || ||||| | | || |||||| | || Sbjct 422830 AG-ATCCGAC--GGTGTCTTGTTCCACAGATCAAACTGCAGCTTTCCCTGACTGGCGGGA 422774 Query 204425 CTGCCCTTGTACGTCGGATAAGG--CTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCA 204482 ||||| | || ||| ||| || | || || | ||||||| | || || | Sbjct 422773 CTGCCTTCATAGGTCTCATAGGGTCCCAAT--TCAGCGGCCAGCTCGATAGATGCCTCAC 422716 Query 204483 TGGCGTGATAGTACATGGTCTCAAAGATCTGAACGTTTAA-TCTGGCGGCCTCCGTTCCG 204541 ||| || ||| ||||| |||||||| |||| || || ||| || ||||| | | | Sbjct 422715 AGGCTGCATGGTAAATGGTTTCAAAGATGAGAACATTCAACTCT-GCAGCCTCGGGGCTG 422657 Query 204542 TCAAACGCCAGACCCAGCATGGCAAACACGTCCGCCAAGCCCTGCACTCCGATTCCCAAC 204601 || | | || | ||| | ||||||||| |||| |||||| || || | | | | Sbjct 422656 TCGTAGGGCATTCGTAGCTTCATAAACACGTCAGCCAGGCCCTGAACACCCACAGCAATC 422597 Query 204602 GGTCTGT 204608 ||||||| Sbjct 422596 GGTCTGT 422590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154911756240