Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq23 145 9e-30 seq19 105 8e-18 >seq23 Length=2267247 Score = 145 bits (160), Expect = 9e-30 Identities = 348/520 (67%), Gaps = 16/520 (3%) Strand=Plus/Minus Query 116995 ACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATAAAGTCAAAT 117054 ||||||||||| || ||||||||||| || | || ||||| ||||| ||||| || Sbjct 1857800 ACTCGCTTCTCGAAAAAGTTGGTCTTGCCGGCCAGAGAGATGTTCTCCATGAAGTCGAAG 1857741 Query 117055 GGATTCTTCGCGTTCCAAA--TGGGTGGCACCC----CAACTTGTTTGAGGAGACGATCC 117108 || || | | ||| | | | || | ||| ||||| || ||||| || Sbjct 1857740 GGGTTGGTGGAGTTATACACCTTGGAGTTACCGAGAGCAACT------AGCAGACGGTCA 1857687 Query 117109 GACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTACATGGG 117168 | ||| |||| ||||||| | ||||| || | ||||||||| | ||| ||| || Sbjct 1857686 GCGACAAACTCGATGTACTGGCACATCAGCTTGGCGTTCATACCAAGCAGACCACAGGGC 1857627 Query 117169 AGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGTGGATA 117228 || ||||| | |||| | | ||| || |||| ||||| | || | | | | | Sbjct 1857626 AGAGCGTCAGTAAGGAACTCCTGCTCGATGCCAACAGCCTCGACAATGACGTCCTCAACA 1857567 Query 117229 GTTTCGGTAGTGGGTCTATTACGCAAAGT-CTTGAAGAGCTCCACGGCAAACTCCTGGTG 117287 | | | | ||||| || | ||| || | ||| ||| |||||| || ||| Sbjct 1857566 ATCTTCTTTGAGGGTCGGTT-CTCAAGGTGCGAGAAAAGCAGGCAGGCAAAGTCAGTGTG 1857508 Query 117288 GAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCG 117347 |||||||| |||||||| || || || || |||||| ||||| ||||||||||| || Sbjct 1857507 CAGACCCTCGTCTCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCAGGCATGAGACCTCG 1857448 Query 117348 CTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGC 117407 |||||| | ||| | || | | ||| || |||||||||||||| ||||| || || Sbjct 1857447 CTTCTTGAGCCAGAAGATGGAGGCGAAAGAGCCGGAGAAGAAGATGCCCTCGACGGCGGC 1857388 Query 117408 AAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTGT-GTCAAACCATTTCATTGCCC 117466 ||| |||| || ||||| | |||| | || ||| || | | ||| || | |||| Sbjct 1857387 AAAGGCAATGAGTCGCTCTCCAAAGGTG-GACTCTTCGTCGGAGATCCACTTGAGGGCCC 1857329 Query 117467 ATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 | | ||||| |||| || || || | || | |||||| Sbjct 1857328 AGTCGGCCTTTTTCTTGATGCAGGGGATGGTCTCGATGGC 1857289 >seq19 Length=1292317 Score = 105 bits (116), Expect = 8e-18 Identities = 202/293 (69%), Gaps = 6/293 (2%) Strand=Plus/Plus Query 169178 GATGAGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAGACGACC 169237 ||| |||||||||||||| |||||||||| ||| ||| ||||| ||||| ||| | || Sbjct 506715 GATCAGACCCTTGATGTGGGAACCATCATGATCCTGATCGGTCATGATCATCAGATGCCC 506774 Query 169238 ATAGCGAAGTTCAGAAACATCTTG-GTAGTCTTTTCCTTGT--TGAAGACCCAAGATCTT 169294 || || || || || || | ||||| || ||||| || ||||| | ||||| Sbjct 506775 GTATCGCAGGTC-CTTGCAGCTCGTGTAGTGCTT--CTTGTGCTGCAGACCGATGATCTC 506831 Query 169295 CTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGCCACTGAAGCGTCGCGGACATT 169354 ||||| | | | || ||| ||| ||| ||| || || || || || || || Sbjct 506832 CTTGATAGCCTGGATCTCGGCGTTCTTCATGATCTGGTCCGTGGACGCCTCTCGCACGTT 506891 Query 169355 CTTACACTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACC 169414 ||| ||||| ||||||||| ||||||| | || || |||| || || || || Sbjct 506892 GAGCATCTTACCACGCAGAGGAAAGGCGCCATATCGTTCTCGACCAATCACAGACAGTCC 506951 Query 169415 CGCGACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACACT 169467 ||| ||| | ||| | || || || ||||| |||| |||||| || |||| Sbjct 506952 AGCGTTCGCCATGGTCATGGCGGAGTCTCCCTCAGTGAGAATGAGCGTGCACT 507004 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980586131960