Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq14 170 4e-37 seq20 111 3e-19 >seq14 Length=2997610 Score = 170 bits (188), Expect = 4e-37 Identities = 181/238 (76%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 || ||||| || ||| || || ||||||||||| || || || ||||| |||| |||||| Sbjct 1945181 TCGGAGTCGCAGAACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCGGAAAGAGT 1945240 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 || || || |||||||||||||| |||||||||||||| || ||||| || || || || Sbjct 1945241 TCGGCCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGGATTCC 1945300 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 || ||||| || || || ||||||||| ||||||||||| || ||||| || || Sbjct 1945301 CTCCTTGTCCTGGATCTTGGACTTGACGTTGTCAATGGTGTCAGAGGACTCCACCTCGAG 1945360 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTTATGGTTACTTGGTG 195156 ||| | ||||| || || | || || || || | ||||| | ||||| |||||| Sbjct 1945361 GGTGATAGTCTTGCCAGTAAGGGTCTTGACAAAGATTTGCACT--GGGTTAGTTGGTG 1945416 Score = 154 bits (170), Expect = 3e-32 Identities = 166/220 (75%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 194923 AGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTC 194982 |||| || || || || ||||||||||| || || || ||||| || | ||| |||| Sbjct 1826622 AGTCGCAGGACGAGATGGAGAGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGGGTTCGG 1826681 Query 194983 CCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCT 195042 || || |||||||||||||| |||||||||||||| || ||||| || ||||| || || Sbjct 1826682 CCGTCCTCGAGCTGCTTACCGGCGAAGATAAGTCGCTGCTGGTCCGGGGGAATTCCCTCC 1826741 Query 195043 TTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTA 195102 ||||| || || || ||||||||| || |||||||| ||| ||||| || ||||| Sbjct 1826742 TTGTCCTGGATCTTGGACTTGACGTTGTCGATGGTGTCGGAAGACTCCACCTCGAGGGTG 1826801 Query 195103 ACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 | ||||| || || | || || || || | ||||||| Sbjct 1826802 ATAGTCTTACCGGTAAGGGTCTTGACAAAAATCTGCATTT 1826841 >seq20 Length=352371 Score = 111 bits (122), Expect = 3e-19 Identities = 91/111 (82%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 194973 AAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGG 195032 |||||||| ||||| |||||||||||||| ||||| || ||||| || ||||| ||||| Sbjct 352369 AAGAGTTCGACCATCCTCGAGCTGCTTACCAGCGAAAATCAGTCGCTGCTGGTCCGGAGG 352310 Query 195033 AATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGA 195083 ||| || || ||||| ||||| || ||||||||| || |||||||| || Sbjct 352309 AATTCCCTCCTTGTCCTGAATCTTGGACTTGACGTTGTCGATGGTGTCGGA 352259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481187758243