Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Yarrowia_20lipolytica_20[genbank_20GCA_5F900087985.1_202016-06-22] 29 sequences; 20,590,669 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq14 158 1e-32 seq9 114 1e-19 >seq14 Length=2997610 Score = 158 bits (174), Expect = 1e-32 Identities = 561/866 (65%), Gaps = 18/866 (2%) Strand=Plus/Plus Query 551727 GGAACTCATGACGTAACTCTTCTATCTCTCGAAGATGGTCTCTTTTCTGTATTAGCTACT 551786 |||||| ||| || ||||||| ||| ||||||| || ||||| || || || Sbjct 27208 GGAACTTTTGATGTTTCTCTTCTGTCTATCGAAGACGGCATCTTTGAGGTCAAGGCCACC 27267 Query 551787 AGTGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTG 551844 ||||||| | ||||| ||||| || || ||||| || |||| || | || | || Sbjct 27268 GCTGGAGATACCCATCTCGGTGGTGAGGACTTTGACAACCGACTCGTGAACCAC--TTTG 27325 Query 551845 TTGAAGATTTTAAACGAAAAAACAAAGTTGATCTATCTACATCTGCCAA--AGCTCTTCG 551902 || | || || || ||||| |||| || |||| || | ||| |||||| || Sbjct 27326 TTCAGGAGTTCAAGCGAAAGCACAAGAAGGAC--ATCTCCACCAACCAGCGAGCTCTCCG 27383 Query 551903 TCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCAC 551962 || || |||| |||||||| |||| || ||| | ||||| ||| ||||||| | Sbjct 27384 ACGACTGCGAACCGCTTGCGAGCGAGCTAAGCGAACCCTTTCGTCTTCCGCTCAAACATC 27443 Query 551963 TATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAA 552022 ||||| | || || | | ||||| ||||||| | || | || | | ||| Sbjct 27444 CATTGAGATCGACTCTCTCTACGAGGGTATTGATTTCTACACCTCCATCACCCGAGCCCG 27503 Query 552023 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTT 552082 ||| || || | ||| |||||||| || || | || ||||| || | || | Sbjct 27504 ATTCGAGGAACTCTGTCAGGATCTCTTCCGAGGCACTCTCGAGCCAGTTGAGAAGGTCCT 27563 Query 552083 AAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTAC 552142 | || | ||||| || || || || | || ||||| ||||||||||| || || Sbjct 27564 GAAGGACGCTAAGATGGACAAGGCCTCGGTCAACGAGATTGTCCTTGTTGGTGGCTCCAC 27623 Query 552143 AAGAATTCCTAAAATTCGCGAAATGTTAAGTTCT---TATTTCAATGGTAAAAAATTAAA 552199 |||| || || | | | | | | |||| | ||||| || || | | || Sbjct 27624 TCGAATCCCCAAGGTGC---AGAAGCTCGTTTCTGACTTCTTCAACGGAAAGGAGCTGAA 27680 Query 552200 TGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCT 552259 | | | | || || ||||||||||||||||| ||||| || | || || || || || Sbjct 27681 TCGATCTATCAACCCTGATGAGGCTGTTGCCTACGGTGCTGCCGTCCAGGCTGCCATCCT 27740 Query 552260 TTCTGGACAAAC-TGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTAT 552318 |||||| | || | | ||| || ||||| | || | |||||| |||| || | Sbjct 27741 TTCTGGTGACACTTCCTCTTCCACT-CAGGATATTCTGCTCCTCGATGTTGCTCCGCTGT 27799 Query 552319 CTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTA 552378 |||| || | || || | ||| ||| ||||||| || || ||| |||| |||||| Sbjct 27800 CTCTGGGAATCGAGACTGCTGGCGGTGTTATGACCAAGCTCATCCCCCGAAACTCTACTA 27859 Query 552379 TTCCTTGTAAAAAATCTCGTG-TATTTTCTACGTATTCAGATAATCAAACTGCTGTTACA 552437 | || || || || || | || || || || | || || || ||| ||| Sbjct 27860 TCCCCACCAAGAAGTC-CGAGACCTTCTCCACCTACGCTGACAACCAGCCTGGCGTTCTG 27918 Query 552438 ATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTT 552497 ||||| | ||||| || || || || || || || || ||||||| ||| Sbjct 27919 ATTCAGGTCTTTGAGGGTGAGCGAGCTCAGACCAAGGACAACAACATCCTTGGTAAGTTT 27978 Query 552498 AATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGAT 552557 | | ||||||||||| |||||||| || || || || || ||||| || |||||| Sbjct 27979 GAGCTGTCCGGTATTCCTCCCGCTCCTCGAGGTGTTCCTCAGATCGAAGTCACCTTCGAT 28038 Query 552558 ATCGATGCCAATGGAATTTTGAATGT 552583 | || ||||| || ||| | || || Sbjct 28039 GTTGACGCCAACGGTATTCTCAACGT 28064 Score = 154 bits (170), Expect = 1e-31 Identities = 560/866 (65%), Gaps = 18/866 (2%) Strand=Plus/Plus Query 551727 GGAACTCATGACGTAACTCTTCTATCTCTCGAAGATGGTCTCTTTTCTGTATTAGCTACT 551786 |||||| ||| || ||||||| ||| ||||||| || ||||| || || || Sbjct 32535 GGAACTTTTGATGTTTCTCTTCTGTCTATCGAAGACGGCATCTTTGAGGTCAAGGCCACC 32594 Query 551787 AGTGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTG 551844 ||||||| | ||||| ||||| || || ||||| || |||| || | || | || Sbjct 32595 GCTGGAGATACCCATCTCGGTGGTGAGGACTTTGACAACCGACTCGTGAACCAC--TTTG 32652 Query 551845 TTGAAGATTTTAAACGAAAAAACAAAGTTGATCTATCTACATCTGCCAA--AGCTCTTCG 551902 || | || || || ||||| |||| || |||| || | ||| |||||| || Sbjct 32653 TTCAGGAGTTCAAGCGAAAGCACAAGAAGGAC--ATCTCCACCAACCAGCGAGCTCTCCG 32710 Query 551903 TCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCAC 551962 || || |||| |||||||| |||| || ||| | ||||| ||| ||||||| | Sbjct 32711 ACGACTGCGAACCGCTTGCGAGCGAGCTAAGCGAACCCTTTCGTCTTCCGCTCAAACATC 32770 Query 551963 TATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAA 552022 ||||| | || || | | ||||| ||||||| | || | || | | ||| Sbjct 32771 CATTGAGATCGACTCTCTCTACGAGGGTATTGATTTCTACACCTCCATCACCCGAGCCCG 32830 Query 552023 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTT 552082 ||| || || | ||| |||||||| || || | || ||||| || | || | Sbjct 32831 ATTCGAGGAACTCTGTCAGGATCTCTTCCGAGGCACTCTCGAGCCAGTTGAGAAGGTCCT 32890 Query 552083 AAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTAC 552142 | || | ||||| || || || || | || ||||| ||||||||||| || || Sbjct 32891 GAAGGACGCTAAGATGGACAAGGCCTCGGTCAACGAGATTGTCCTTGTTGGTGGCTCCAC 32950 Query 552143 AAGAATTCCTAAAATTCGCGAAATGTTAAGTTCT---TATTTCAATGGTAAAAAATTAAA 552199 |||| || || | | | | | | |||| | ||||| || || | | || Sbjct 32951 TCGAATCCCCAAGGTGC---AGAAGCTCGTTTCTGACTTCTTCAACGGAAAGGAGCTGAA 33007 Query 552200 TGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCT 552259 | | | | || || ||||||||||||||||| ||||| || | || || || || || Sbjct 33008 TCGATCTATCAACCCTGATGAGGCTGTTGCCTACGGTGCTGCCGTCCAGGCTGCCATCCT 33067 Query 552260 TTCTGGACAAAC-TGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTAT 552318 |||||| | || | | ||| || ||||| | || | |||||| |||| || | Sbjct 33068 TTCTGGTGACACTTCCTCTTCCACT-CAGGATATTCTGCTCCTCGATGTTGCTCCGCTGT 33126 Query 552319 CTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTA 552378 |||| || | || || | ||| ||| ||||||| || || ||| |||| | |||| Sbjct 33127 CTCTGGGAATCGAGACTGCTGGCGGTGTTATGACCAAGCTCATCCCCCGAAACTCGACTA 33186 Query 552379 TTCCTTGTAAAAAATCTCGTG-TATTTTCTACGTATTCAGATAATCAAACTGCTGTTACA 552437 | || || || || || | || || || || | || || || ||| ||| Sbjct 33187 TCCCCACCAAGAAGTC-CGAGACCTTCTCCACCTACGCTGACAACCAGCCTGGCGTTCTG 33245 Query 552438 ATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACTTGGTACTTTT 552497 ||||| | ||||| || || || || || || || || ||||||| ||| Sbjct 33246 ATTCAGGTCTTTGAGGGTGAGCGAGCTCAGACCAAGGACAACAACATCCTTGGTAAGTTT 33305 Query 552498 AATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGAT 552557 | | ||||||||||| |||||||| || || || || || ||||| || |||||| Sbjct 33306 GAGCTGTCCGGTATTCCTCCCGCTCCTCGAGGTGTTCCTCAGATCGAAGTCACCTTCGAT 33365 Query 552558 ATCGATGCCAATGGAATTTTGAATGT 552583 | || ||||| || ||| | || || Sbjct 33366 GTTGACGCCAACGGTATTCTCAACGT 33391 >seq9 Length=1942798 Score = 114 bits (126), Expect = 1e-19 Identities = 356/546 (65%), Gaps = 14/546 (3%) Strand=Plus/Plus Query 551727 GGAACTCATGACGTAACTCTTCTATCTCTCGAAGATGGTCTCTTTTCTGTATTAGCTACT 551786 |||||| ||| || ||||||| ||| ||||||| || ||||| || || || Sbjct 16708 GGAACTTTTGATGTTTCTCTTCTGTCTATCGAAGACGGCATCTTTGAGGTCAAGGCCACC 16767 Query 551787 AGTGGAGATTCTCATCTTGGTGGCGAAGATTTTGATAATAGACTGGT--ATCATGGTGTG 551844 ||||||| | ||||| ||||| || || ||||| || |||| || | || | || Sbjct 16768 GCTGGAGATACCCATCTCGGTGGTGAGGACTTTGACAACCGACTCGTGAACCAC--TTTG 16825 Query 551845 TTGAAGATTTTAAACGAAAAAACAAAGTTGATCTATCTACATCTGCCAA--AGCTCTTCG 551902 || | || || || ||||| |||| || |||| || | ||| |||||| || Sbjct 16826 TTCAGGAGTTCAAGCGAAAGCACAAGAAGGAC--ATCTCCACCAACCAGCGAGCTCTCCG 16883 Query 551903 TCGTCTAAGAACTGCTTGCGAAAGAGCCAAACGAGCTCTTTCATCTGGTACTCAAACCAC 551962 || || |||| ||||| || |||| || ||| | ||||| ||| |||| || | Sbjct 16884 ACGGCTGCGAACCGCTTGTGAGCGAGCTAAGCGAACCCTTTCGTCTTCCGCTCAGACATC 16943 Query 551963 TATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTATTTCGAGGGCCAA 552022 || || | || || | | |||||| ||||||| | || | || | | ||| Sbjct 16944 CATCGAGATCGACTCTCTCTATGAGGGTATTGATTTCTACACCTCCATCACTCGAGCCCG 17003 Query 552023 ATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGTAGAACAAGTTTT 552082 ||| || || | ||| |||||||| || || | || ||||| || | || | Sbjct 17004 ATTCGAGGAACTCTGTCAGGATCTCTTCCGAGGCACTCTCGAGCCAGTTGAGAAGGTCCT 17063 Query 552083 AAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGTTGGTGGATCTAC 552142 | ||| | ||||| || || || ||| | || ||||| ||||||||||| || || Sbjct 17064 GAAAGACGCTAAGATGGACAAGGCCTCAGTCAACGAGATTGTCCTTGTTGGTGGCTCCAC 17123 Query 552143 AAGAATTCCTAAAATTCGCGAAATGTTAAGTTCT---TATTTCAATGGTAAAAAATTAAA 552199 |||| || || | | | | | | |||| | ||||| || ||| | | || Sbjct 17124 TCGAATCCCCAAGGTGC---AGAAGCTCGTTTCTGACTTCTTCAACGGAAAAGAGCTGAA 17180 Query 552200 TGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCT 552259 | | | | || || ||||||||||||||||| ||||| || | || || || || || Sbjct 17181 TCGATCTATCAACCCTGATGAGGCTGTTGCCTACGGTGCTGCCGTCCAGGCTGCCATCCT 17240 Query 552260 TTCTGG 552265 |||||| Sbjct 17241 TTCTGG 17246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029294466349210